View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_194 (Length: 259)
Name: NF6876A_low_194
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_194 |
 | |
|
| [»] scaffold0441 (2 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0435 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0183 (1 HSPs) |
| | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 29897316 - 29897075
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
29897316 |
gccttcagagtatagcagtattcagtatcatgacctggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgttggtaatctttctggca |
29897217 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29897216 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
29897117 |
T |
|
| Q |
204 |
ttgtggtcgaggctgttgttgctgatacagttgctgaggata |
245 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29897116 |
ttgtggtcgaggttgttgttgctgatacagttgctgaggata |
29897075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 22955197 - 22955326
Alignment:
| Q |
69 |
gtcagctctataccatgctggtaatctttctggcaccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatat |
168 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| || ||||| | | |||||||||||| ||| || | |||||| ||| ||||||| ||||||| |
|
|
| T |
22955197 |
gtcaggtctataccatgctggtaatcttgctggtactaggggaggcgccttggtctggaccagattatttttgagcaattgtggaagcaaattcgcatat |
22955296 |
T |
|
| Q |
169 |
ttcatggggatcgggtcaaattgggtcctt |
198 |
Q |
| |
|
| |||||| || ||| ||||||| |||||| |
|
|
| T |
22955297 |
tgcatgggaattggggcaaattgtgtcctt |
22955326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 2339558 - 2339799
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2339558 |
gccttcagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctagtaatctttctggca |
2339657 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2339658 |
ccttaggaggcggcctggtctggaccaaattcttctctagcaatgatgggagcaaatccgcatatttcatggggatcgggtcaaattgtgtcctttgagc |
2339757 |
T |
|
| Q |
204 |
ttgtggtcgaggctgttgttgctgatacagttgctgaggata |
245 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
2339758 |
ttgtggtcgaggttgttgttgctgatacagttgctgatgata |
2339799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 842397 - 842163
Alignment:
| Q |
5 |
ccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcac |
104 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
842397 |
ccttcagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctggtaatctttctggcac |
842298 |
T |
|
| Q |
105 |
cttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagct |
204 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
842297 |
cttaggaggcggcctggtctagaccaaattcttctttagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgtgtcctttgagct |
842198 |
T |
|
| Q |
205 |
tgtggtcgaggctgttgttgctgatacagttgctg |
239 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
842197 |
tgtggtcgaggttgttgttgctgatacggttgctg |
842163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 849573 - 849339
Alignment:
| Q |
5 |
ccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcac |
104 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
849573 |
ccttcagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctggtaatctttctggcac |
849474 |
T |
|
| Q |
105 |
cttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagct |
204 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
849473 |
cttaggaggcggcctggtctagaccaaattcttctttagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgtgtcctttgagct |
849374 |
T |
|
| Q |
205 |
tgtggtcgaggctgttgttgctgatacagttgctg |
239 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
849373 |
tgtggtcgaggttgttgttgctgatacggttgctg |
849339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 1207577 - 1207343
Alignment:
| Q |
5 |
ccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcac |
104 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1207577 |
ccttcagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctggtaatctttctggcac |
1207478 |
T |
|
| Q |
105 |
cttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagct |
204 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1207477 |
cttaggaggcggcctggtctagaccaaattcttctttagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgtgtcctttgagct |
1207378 |
T |
|
| Q |
205 |
tgtggtcgaggctgttgttgctgatacagttgctg |
239 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
1207377 |
tgtggtcgaggttgttgttgctgatacggttgctg |
1207343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0441 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: scaffold0441
Description:
Target: scaffold0441; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 7006 - 6795
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7006 |
gccttcagagcatagcagtattcagtatcaggacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctggtaatctttctggca |
6907 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
| |||||||| |||||||| |||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6906 |
ctttaggaggcggcctggtttggaccaaatgcttctttagcaatgaagggagcaaatcagcatatttcatggggatcgggtcaaattgtgtcctttgagc |
6807 |
T |
|
| Q |
204 |
ttgtggtcgagg |
215 |
Q |
| |
|
||||||||||| |
|
|
| T |
6806 |
ctgtggtcgagg |
6795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0441; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 11080 - 10869
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11080 |
gccttcagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctggtaatctttctggca |
10981 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
| |||||||| |||||||| || |||| | ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10980 |
ctttaggaggcggcctggtttgaaccagacacttctttagcaatgaagggagcaaatcagcatatttcatggggatcgggtcaaattgtgtcctttgagc |
10881 |
T |
|
| Q |
204 |
ttgtggtcgagg |
215 |
Q |
| |
|
||||||||||| |
|
|
| T |
10880 |
ctgtggtcgagg |
10869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 16724299 - 16724510
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16724299 |
gccttcagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctggtaatctttctggca |
16724398 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16724399 |
ttttaggaggcggcctggtctggaccaaatgcttctttagcaatgaagggagcaaatcagcaaatttcatggggatcgggtcaaattgtgtcctttgagc |
16724498 |
T |
|
| Q |
204 |
ttgtggtcgagg |
215 |
Q |
| |
|
||||||||||| |
|
|
| T |
16724499 |
ctgtggtcgagg |
16724510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 15899006 - 15899215
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
|||||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
15899006 |
gccttcagagcatagcagtattcaatatcatgacccggagccccttgatgaaaagcacaaaacttgtcaggtttataccatgctggtaatctttcaggca |
15899105 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
| |||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15899106 |
ctttaggaggcggcctggtctgaaccaaatgcttctttagcaatgctgggagcaaatacgcatatttcatggggatcgggtcaaattgtgtcctttgagc |
15899205 |
T |
|
| Q |
204 |
ttgtggtcga |
213 |
Q |
| |
|
||||||||| |
|
|
| T |
15899206 |
ctgtggtcga |
15899215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 14921393 - 14921182
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14921393 |
gccttcagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctggtaatctttctggca |
14921294 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
| |||||||| |||||||| || |||| | ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14921293 |
ctttaggaggcggcctggtttgaaccagacacttctttagcaatgaagggagcaaatcagcatatttcatggggatcgggtcaaattgtgtcctttgagc |
14921194 |
T |
|
| Q |
204 |
ttgtggtcgagg |
215 |
Q |
| |
|
||||||||||| |
|
|
| T |
14921193 |
ctgtggtcgagg |
14921182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 15571225 - 15571436
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15571225 |
gcctttagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaatttgtcaggtctataccatgctggtagtctttctggca |
15571324 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
| |||||||| || ||||| |||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
15571325 |
ctttaggaggcggtctggtttggaccaaatgcttctttagcaatgaagggagcaaatcagcatatttcatggggatcgggtcaaattgtgtcctatgagc |
15571424 |
T |
|
| Q |
204 |
ttgtggtcgagg |
215 |
Q |
| |
|
||||||||||| |
|
|
| T |
15571425 |
ctgtggtcgagg |
15571436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 15575353 - 15575564
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15575353 |
gcctttagagcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaatttgtcaggtctataccatgctggtagtctttctggca |
15575452 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
| |||||||| || ||||| |||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
15575453 |
ctttaggaggcggtctggtttggaccaaatgcttctttagcaatgaagggagcaaatcagcatatttcatggggatcgggtcaaattgtgtcctatgagc |
15575552 |
T |
|
| Q |
204 |
ttgtggtcgagg |
215 |
Q |
| |
|
||||||||||| |
|
|
| T |
15575553 |
ctgtggtcgagg |
15575564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 12509616 - 12509743
Alignment:
| Q |
19 |
caatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcaccttaggaggtggcc |
118 |
Q |
| |
|
|||| ||||| ||||||||| || ||||||||||| ||||||||| | ||||||||| |||| ||||| |||| | |||||||| | ||| || | |
|
|
| T |
12509616 |
caatgttcagcatcatgacctggtgccccttgatggaaagcacaagagaggtcagctctgtaccccgctggcaatcatgctggcaccggaagagatgcct |
12509715 |
T |
|
| Q |
119 |
tggtctggaccaaattcttctctagcaa |
146 |
Q |
| |
|
|||| |||||||||||| |||| ||||| |
|
|
| T |
12509716 |
tggtgtggaccaaattcctctccagcaa |
12509743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 75212 - 75001
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
75212 |
gccttcagggcatagcagtattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcaggtctataccatgctagtaatctttctggca |
75113 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
| |||||||| ||| ||| |||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
75112 |
ctttaggaggcggcatggcttggaccaaatgcttctttagcaatgaagggagcaaatcagcatatttcatggggatcgggtcaaattgtgtcctttgagc |
75013 |
T |
|
| Q |
204 |
ttgtggtcgagg |
215 |
Q |
| |
|
||||||||||| |
|
|
| T |
75012 |
ctgtggtcgagg |
75001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 26383728 - 26383939
Alignment:
| Q |
4 |
gccttcagagtatagcaatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggca |
103 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
26383728 |
gccttcagagcatagtagtattcagtatcatgacccgggacctcttgatgaaaagcacaaaacttgtcaggcctataccatgttggtaatctttctggaa |
26383827 |
T |
|
| Q |
104 |
ccttaggaggtggcctggtctggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctttgagc |
203 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26383828 |
tcttaggaggcggcctggtctggaccacattcttctttagcaatgttgggagcaaatccacttatttcatggggatcgggtcaaattgtgtcctttgagc |
26383927 |
T |
|
| Q |
204 |
ttgtggtcgagg |
215 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26383928 |
ttgtggtcgagg |
26383939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 20054301 - 20054475
Alignment:
| Q |
24 |
ttcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcaccttaggaggtggcctggtc |
123 |
Q |
| |
|
|||| ||||||| || || ||||||||||| || | |||||| ||||| ||||||||||||||| |||||| |||| ||| |||||| | | |||| |
|
|
| T |
20054301 |
ttcaatatcatggccaggtgccccttgatggaaggtacaaaaaaggtcaggtctataccatgctggcaatcttgctggtaccggaggaggcgccttggtt |
20054400 |
T |
|
| Q |
124 |
tggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctt |
198 |
Q |
| |
|
||||| | |||||| | |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20054401 |
tggacaagattctttttgagcaattgtggaagcaaatccgcatatttcatggggatcgggtcaaattgtgtcctt |
20054475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0435 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0435
Description:
Target: scaffold0435; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 12166 - 12340
Alignment:
| Q |
24 |
ttcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcaccttaggaggtggcctggtc |
123 |
Q |
| |
|
|||| |||||||||| || ||||||||||| || | |||||| ||||| ||||||||||||||| |||||| |||| ||| |||||| | | |||| |
|
|
| T |
12166 |
ttcaatatcatgaccaggtgccccttgatggaaggtacaaaaaaggtcaggtctataccatgctggcaatcttgctggtaccagaggaggcgccttggtt |
12265 |
T |
|
| Q |
124 |
tggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctt |
198 |
Q |
| |
|
||||||| |||||| | |||||| ||| ||||||||||||||||||||||| || ||| ||||||| |||||| |
|
|
| T |
12266 |
tggaccagattctttttgagcaattgtggaagcaaatccgcatatttcatgggaattggggcaaattgtgtcctt |
12340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 16986 - 17160
Alignment:
| Q |
24 |
ttcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcaccttaggaggtggcctggtc |
123 |
Q |
| |
|
|||| ||||||| || || ||||||||||| || | |||||| ||||| ||||||| |||||| |||||| |||| ||| |||||| | | |||| |
|
|
| T |
16986 |
ttcaatatcatggccaggtgccccttgatggaaggtacaaaaaaggtcaggtctatacgatgctgacaatcttgctggtaccagaggaggcgccttggtt |
17085 |
T |
|
| Q |
124 |
tggaccaaattcttctctagcaatgctgggagcaaatccgcatatttcatggggatcgggtcaaattgggtcctt |
198 |
Q |
| |
|
|||||||||||| | | |||||| ||| ||||||||||||||||||||||| || ||| ||||||| |||||| |
|
|
| T |
17086 |
tggaccaaattccttttgagcaattgtggaagcaaatccgcatatttcatgggaattggggcaaattgtgtcctt |
17160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 32305 - 32176
Alignment:
| Q |
44 |
ccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcaccttaggaggtggcctggtctggaccaaattcttctctag |
143 |
Q |
| |
|
|||||||||| || | |||||| ||||| ||||||||||||||| |||||| |||| ||| |||||| | | |||| ||||||| |||||| | || |
|
|
| T |
32305 |
ccccttgatggaaggtacaaaaaaggtcaggtctataccatgctggcaatcttgctggtaccggaggaggcgccttggtttggaccagattctttttgag |
32206 |
T |
|
| Q |
144 |
caatgctgggagcaaatccgcatatttcat |
173 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |
|
|
| T |
32205 |
caattgtggaagcaaatccgcatatttcat |
32176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 10861 - 10734
Alignment:
| Q |
19 |
caatattcagtatcatgacccggggccccttgatgaaaagcacaaaacttgtcagctctataccatgctggtaatctttctggcaccttaggaggtggcc |
118 |
Q |
| |
|
|||| ||||| ||||||||| || ||||||||||| ||||||||| | ||||||||| |||| ||||| |||| | |||||||| | ||| || | |
|
|
| T |
10861 |
caatgttcagcatcatgacctggtgccccttgatggaaagcacaagagaggtcagctctgtaccccgctggcaatcatgctggcaccggaagagatgcct |
10762 |
T |
|
| Q |
119 |
tggtctggaccaaattcttctctagcaa |
146 |
Q |
| |
|
|||| |||||||||||| |||| ||||| |
|
|
| T |
10761 |
tggtgtggaccaaattcctctccagcaa |
10734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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