View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_200 (Length: 256)
Name: NF6876A_low_200
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_200 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 16438208 - 16438403
Alignment:
| Q |
32 |
acatcaacacaaaaatggcagcgacagtggagattgatccaaatcgaaggtgacaaagagcagataaagaaagagaaacaaaacaaacccccaaaaatgg |
131 |
Q |
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| T |
16438208 |
acatcaacacaaaaatggcagcgactttggagatggatccaaatcgaaggtaacaaag-gtagacaaagaaagaaaaacaaaacaaaccctcaaaaatgg |
16438306 |
T |
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| Q |
132 |
aatcaacccgcaaactcgtcatcatcacttcaaccaaaattcaccaccacgctcaagatcaccattaaaattcaaactcccaacccaacaacaccaa |
228 |
Q |
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| T |
16438307 |
aaccaacccacaaactcctcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaacttctaacccaacaacaccaa |
16438403 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 39041731 - 39041807
Alignment:
| Q |
152 |
atcatcacttcaaccaaaattcaccaccacgctcaagatcaccattaaaattcaaactcccaacccaacaacaccaa |
228 |
Q |
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| T |
39041731 |
atcatcaccacaaccaaaattcaccaccacacacaagatcacaattaacattccaactcccagtccaacatcaccaa |
39041807 |
T |
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