View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_201 (Length: 256)

Name: NF6876A_low_201
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_201
NF6876A_low_201
[»] chr7 (11 HSPs)
chr7 (29-254)||(841741-841966)
chr7 (29-254)||(848917-849142)
chr7 (29-254)||(1206921-1207146)
chr7 (50-254)||(23883312-23883516)
chr7 (50-254)||(42634783-42634987)
chr7 (19-252)||(16290792-16291025)
chr7 (28-252)||(801934-802158)
chr7 (50-254)||(8813992-8814196)
chr7 (44-246)||(9466020-9466222)
chr7 (44-246)||(16396975-16397177)
chr7 (44-246)||(30373472-30373674)
[»] chr5 (14 HSPs)
chr5 (29-254)||(29896674-29896899)
chr5 (21-254)||(22955460-22955693)
chr5 (50-254)||(12391950-12392154)
chr5 (19-252)||(34465114-34465347)
chr5 (50-254)||(1801674-1801878)
chr5 (50-254)||(7258459-7258663)
chr5 (50-254)||(7790370-7790574)
chr5 (44-254)||(36379496-36379706)
chr5 (44-254)||(37004168-37004378)
chr5 (44-246)||(5443730-5443932)
chr5 (44-246)||(15788247-15788449)
chr5 (44-246)||(17953537-17953739)
chr5 (44-246)||(31516745-31516947)
chr5 (44-246)||(11947929-11948131)
[»] chr1 (3 HSPs)
chr1 (29-254)||(2339975-2340200)
chr1 (50-254)||(6201487-6201691)
chr1 (44-252)||(5632647-5632855)
[»] scaffold0387 (1 HSPs)
scaffold0387 (19-254)||(5807-6042)
[»] chr6 (9 HSPs)
chr6 (44-254)||(2411949-2412159)
chr6 (21-254)||(20054609-20054842)
chr6 (50-254)||(27513501-27513705)
chr6 (19-254)||(2410407-2410638)
chr6 (50-254)||(16821526-16821730)
chr6 (50-254)||(20044396-20044600)
chr6 (50-254)||(24147211-24147415)
chr6 (50-254)||(619668-619872)
chr6 (44-246)||(9139923-9140125)
[»] scaffold0019 (1 HSPs)
scaffold0019 (21-254)||(17294-17527)
[»] scaffold0183 (1 HSPs)
scaffold0183 (21-254)||(31784-32017)
[»] scaffold0551 (2 HSPs)
scaffold0551 (50-254)||(9879-10083)
scaffold0551 (107-254)||(3822-3969)
[»] scaffold0435 (1 HSPs)
scaffold0435 (50-254)||(12431-12635)
[»] chr4 (7 HSPs)
chr4 (41-254)||(16724575-16724788)
chr4 (50-254)||(18039815-18040019)
chr4 (50-254)||(14920904-14921108)
chr4 (50-254)||(22707505-22707709)
chr4 (50-252)||(15899271-15899472)
chr4 (50-254)||(15571510-15571714)
chr4 (50-210)||(15575638-15575798)
[»] chr2 (3 HSPs)
chr2 (19-252)||(21764034-21764267)
chr2 (44-246)||(12380096-12380298)
chr2 (44-246)||(22945831-22946033)
[»] chr3 (12 HSPs)
chr3 (50-254)||(6197955-6198159)
chr3 (50-254)||(21611301-21611505)
chr3 (19-252)||(20439567-20439800)
chr3 (19-252)||(41436732-41436965)
chr3 (50-254)||(8807871-8808075)
chr3 (50-254)||(15533637-15533841)
chr3 (50-254)||(46397011-46397215)
chr3 (50-254)||(8619995-8620200)
chr3 (19-254)||(15596519-15596754)
chr3 (19-254)||(15914967-15915202)
chr3 (44-246)||(46376711-46376913)
chr3 (44-246)||(5954477-5954679)
[»] chr8 (1 HSPs)
chr8 (50-254)||(21479703-21479907)
[»] scaffold1197 (1 HSPs)
scaffold1197 (47-254)||(2080-2287)
[»] scaffold0104 (1 HSPs)
scaffold0104 (21-254)||(28843-29076)
[»] scaffold0441 (1 HSPs)
scaffold0441 (50-254)||(10591-10795)
[»] scaffold0094 (1 HSPs)
scaffold0094 (19-254)||(38868-39103)
[»] scaffold0029 (2 HSPs)
scaffold0029 (41-191)||(74786-74936)
scaffold0029 (44-246)||(25599-25801)
[»] scaffold0002 (1 HSPs)
scaffold0002 (44-246)||(302342-302544)
[»] scaffold0595 (1 HSPs)
scaffold0595 (44-252)||(9410-9619)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 841966 - 841741
Alignment:
Q  29 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 128  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  841966 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 841867  T
Q  129 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 228  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||    
T  841866 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctctccatcg 841767  T
Q  229 atgggcatactctttgaatgtttcct 254  Q
    ||||||||||||||||||||||||||    
T  841766 atgggcatactctttgaatgtttcct 841741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 849142 - 848917
Alignment:
Q  29 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 128  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  849142 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 849043  T
Q  129 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 228  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||    
T  849042 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctctccatcg 848943  T
Q  229 atgggcatactctttgaatgtttcct 254  Q
    ||||||||||||||||||||||||||    
T  848942 atgggcatactctttgaatgtttcct 848917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 1207146 - 1206921
Alignment:
Q  29 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 128  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  1207146 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 1207047  T
Q  129 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 228  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||    
T  1207046 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctctccatcg 1206947  T
Q  229 atgggcatactctttgaatgtttcct 254  Q
    ||||||||||||||||||||||||||    
T  1206946 atgggcatactctttgaatgtttcct 1206921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 23883312 - 23883516
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  23883312 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 23883411  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || ||||| ||||||||||| ||||||||    
T  23883412 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcgctgggcatactccttgaatgt 23883511  T
Q  250 ttcct 254  Q
    |||||    
T  23883512 ttcct 23883516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 42634783 - 42634987
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  42634783 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 42634882  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  42634883 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 42634982  T
Q  250 ttcct 254  Q
    |||||    
T  42634983 ttcct 42634987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 16290792 - 16291025
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| | ||||||||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||| ||||| ||  | |||||||||||| ||    
T  16290792 tccactggtagaagctccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccgaccatttcagcgaagttcttgggcgta 16290891  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || ||||||||||| ||   ||    
T  16290892 cttccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggcagcaacat 16290991  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttc 252  Q
    | || || || || ||||||||||||||||||||    
T  16290992 ccctccaccgctgagcatactctttgaatgtttc 16291025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 801934 - 802158
Alignment:
Q  28 agaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacc 127  Q
    ||||||||||| ||| ||||| | ||||||||| |||||| ||||||| || ||||||||||||||||| ||  |||||||||||||| |||||||||||    
T  801934 agaagctccattttttactaaacatccttctcggactccttcttccaattgcacacccatgccaaccatttcagcaaagttcttgggcgtacttccgacc 802033  T
Q  128 atcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatc 227  Q
    ||||||||||||||||| ||| ||||||||||||||||||  |||||||| ||||||||||||||||| || ||||||||||| ||   ||| || || |    
T  802034 atcttctcgtagtagaactgactgagagtttttaagaagagtttggtcatttccttctcttctatacgtgggctgacttgggcagcaacatccctccacc 802133  T
Q  228 gatgggcatactctttgaatgtttc 252  Q
    | || ||||||||||||||||||||    
T  802134 gctgagcatactctttgaatgtttc 802158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 8814196 - 8813992
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  8814196 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 8814097  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || | ||| ||||||||||| ||||| ||    
T  8814096 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccgtcgctgggcatactccttgaacgt 8813997  T
Q  250 ttcct 254  Q
    |||||    
T  8813996 ttcct 8813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 9466222 - 9466020
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9466222 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9466123  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| ||||||||    
T  9466122 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcttt 9466023  T
Q  244 gaa 246  Q
    |||    
T  9466022 gaa 9466020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 16396975 - 16397177
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  16396975 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 16397074  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||||||||||||    
T  16397075 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcatactcttt 16397174  T
Q  244 gaa 246  Q
    |||    
T  16397175 gaa 16397177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 30373472 - 30373674
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||||||||||||||| | ||| || |    
T  30373472 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtacttccgaccatctttttgtaataaa 30373571  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || |||||||| |||||    
T  30373572 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaatccgtgggctgacttgggcagcggtgtctctccaccgttgggcatattcttt 30373671  T
Q  244 gaa 246  Q
    |||    
T  30373672 gaa 30373674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 29896899 - 29896674
Alignment:
Q  29 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 128  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| ||||||||||||    
T  29896899 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgacca 29896800  T
Q  129 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 228  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  29896799 tcttctcgtagtagaaatgattgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctctccatcg 29896700  T
Q  229 atgggcatactctttgaatgtttcct 254  Q
     |||||||||||||||||||||||||    
T  29896699 ctgggcatactctttgaatgtttcct 29896674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 22955460 - 22955693
Alignment:
Q  21 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 120  Q
    |||| ||||||| ||||| ||| ||||| ||||||||||| |||||| ||||||| ||||||||||| || ||||| ||| |||||||||||||| ||||    
T  22955460 cactggcagaagttccatttttgactaaacgtccttctcggactccttcttccaattgtacacccataccgaccatttctgcaaagttcttgggcgtact 22955559  T
Q  121 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 220  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||  |||||||||||||||||||||||||| || ||||||||||| ||  |||||    
T  22955560 tccgaccatcttctcgtagtagaactgactaagagtttttaagaagaatttggtcatctccttctcttctatacgcgggctgacttgggcagcaatatct 22955659  T
Q  221 cttcatcgatgggcatactctttgaatgtttcct 254  Q
    || ||||| |||||| || |||||||||||||||    
T  22955660 ctccatcgttgggcaaacactttgaatgtttcct 22955693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 12391950 - 12392154
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  12391950 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 12392049  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || ||||| ||||||||||| ||||||||    
T  12392050 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcgctgggcatactccttgaatgt 12392149  T
Q  250 ttcct 254  Q
    |||||    
T  12392150 ttcct 12392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 34465347 - 34465114
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||    
T  34465347 tccactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgta 34465248  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || ||||||||||| ||   ||    
T  34465247 cttccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggcagcaacat 34465148  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttc 252  Q
    |||| || || || ||||||||||||||||||||    
T  34465147 ctctccaccgctgagcatactctttgaatgtttc 34465114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 1801878 - 1801674
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  1801878 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 1801779  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  1801778 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 1801679  T
Q  250 ttcct 254  Q
    |||||    
T  1801678 ttcct 1801674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 7258459 - 7258663
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7258459 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7258558  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  7258559 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 7258658  T
Q  250 ttcct 254  Q
    |||||    
T  7258659 ttcct 7258663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 7790574 - 7790370
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7790574 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7790475  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  7790474 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 7790375  T
Q  250 ttcct 254  Q
    |||||    
T  7790374 ttcct 7790370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 254
Target Start/End: Original strand, 36379496 - 36379706
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  36379496 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 36379595  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| ||||||||    
T  36379596 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcttt 36379695  T
Q  244 gaatgtttcct 254  Q
    ||| |||||||    
T  36379696 gaacgtttcct 36379706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 254
Target Start/End: Original strand, 37004168 - 37004378
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  37004168 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 37004267  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| ||||||||    
T  37004268 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcttt 37004367  T
Q  244 gaatgtttcct 254  Q
    ||| |||||||    
T  37004368 gaacgtttcct 37004378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 5443730 - 5443932
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5443730 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5443829  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || ||||| || ||||||||||| ||||| ||||| || || ||||| ||||| ||    
T  5443830 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaatacgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcctt 5443929  T
Q  244 gaa 246  Q
    |||    
T  5443930 gaa 5443932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 15788247 - 15788449
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  15788247 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 15788346  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||||||||||||    
T  15788347 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcatactcttt 15788446  T
Q  244 gaa 246  Q
    |||    
T  15788447 gaa 15788449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 17953739 - 17953537
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  17953739 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtaataaa 17953640  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| ||||||||    
T  17953639 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcttt 17953540  T
Q  244 gaa 246  Q
    |||    
T  17953539 gaa 17953537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 31516947 - 31516745
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  31516947 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 31516848  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||||||||||||    
T  31516847 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcatactcttt 31516748  T
Q  244 gaa 246  Q
    |||    
T  31516747 gaa 31516745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 11947929 - 11948131
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  11947929 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 11948028  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| ||||||||    
T  11948029 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcttt 11948128  T
Q  244 gaa 246  Q
    |||    
T  11948129 gaa 11948131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 2339975 - 2340200
Alignment:
Q  29 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 128  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| ||||||||||||    
T  2339975 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgacca 2340074  T
Q  129 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcg 228  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  2340075 tcttctcgtagtagaaatgattgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctctccatcg 2340174  T
Q  229 atgggcatactctttgaatgtttcct 254  Q
     |||||||||||||||||||||||||    
T  2340175 ctgggcatactctttgaatgtttcct 2340200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 6201487 - 6201691
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||| || || |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  6201487 cgtccttctcggactccttcttccaattgtacgcctataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 6201586  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    | || ||||||||||||| |||| ||||||| |||||||||| ||| ||  |||||||||| |||||||| || ||||| ||||||||||| ||||||||    
T  6201587 taagggtttttaagaagagcttgatcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcgctgggcatactccttgaatgt 6201686  T
Q  250 ttcct 254  Q
    |||||    
T  6201687 ttcct 6201691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 252
Target Start/End: Original strand, 5632647 - 5632855
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5632647 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatttccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5632746  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| || |||||    
T  5632747 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtattcttt 5632846  T
Q  244 gaatgtttc 252  Q
    ||| |||||    
T  5632847 gaacgtttc 5632855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 5807 - 6042
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| | ||||| | |||| || ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  | ||||| |||||| ||    
T  5807 tccactggaagaagttacatcctttactaaacgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcgaagtttttgggcgta 5906  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||| |  ||||||||||| |||||||    
T  5907 cttccgaccatcttctcgtagtagaactgatttagagtttttaagaagagcttggtcatctctttctcttctatacgtgagctgacttgggcagcggtat 6006  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttcct 254  Q
    |||||||||| |||||||||||||||||||||||||    
T  6007 ctcttcatcgttgggcatactctttgaatgtttcct 6042  T

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Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 44 - 254
Target Start/End: Complemental strand, 2412159 - 2411949
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  2412159 actaaacgtccttctcgcactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtaga 2412060  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | |||||||||||||||||||| | |||||||||||  || ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||    
T  2412059 actgattgagagtttttaagaaaagcttggtcatctttttttcttctatacgcggactaacttgggcagcggtatctctccatcgctgggcatactcttt 2411960  T
Q  244 gaatgtttcct 254  Q
    |||||||||||    
T  2411959 gaatgtttcct 2411949  T

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Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 20054609 - 20054842
Alignment:
Q  21 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 120  Q
    |||| ||||||| | ||||| ||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||  |||||||||||||| ||||    
T  20054609 cactggcagaagtttcatctctaactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatctcagcaaagttcttgggcgtact 20054708  T
Q  121 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||| ||  ||  |||||||||| | ||||||     
T  20054709 tccgaccatcttctcgtagtagaactgattgagagtttttaagaagagtttggtcatctctttctcttctacacacgggatgacttgggcagtggtatcc 20054808  T
Q  221 cttcatcgatgggcatactctttgaatgtttcct 254  Q
    || ||||| ||||||||||| |||||||||||||    
T  20054809 ctccatcgctgggcatactccttgaatgtttcct 20054842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 27513705 - 27513501
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  27513705 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 27513606  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || |||||||| || ||||| ||||||||||| ||||||||    
T  27513605 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatccctccatcgctgggcatactccttgaatgt 27513506  T
Q  250 ttcct 254  Q
    |||||    
T  27513505 ttcct 27513501  T

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Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 2410407 - 2410638
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| | |||||||||||| || ||||| ||||||| ||  | |||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||    
T  2410407 tccactggtagaagctccatcctttactaaacgtccttttcagattccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgta 2410506  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    |||||||||||||||||||||||    | | |||||||||||||||| |||||||||||||| || ||||||||||| || || |||||||  || ||||    
T  2410507 cttccgaccatcttctcgtagta----taactgagagtttttaagaaaatcttggtcatctctttttcttctatacgcgggctaacttgggtagcagtat 2410602  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttcct 254  Q
    |||| |||||||||||||||||||||||||||||||    
T  2410603 ctctccatcgatgggcatactctttgaatgtttcct 2410638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 16821526 - 16821730
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  16821526 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 16821625  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    ||||||||||||||||||  |||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  16821626 tgagagtttttaagaagaggttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 16821725  T
Q  250 ttcct 254  Q
    |||||    
T  16821726 ttcct 16821730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 20044396 - 20044600
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  20044396 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 20044495  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || |||||  |||||||||| ||||| ||    
T  20044496 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgcggggcatactccttgaacgt 20044595  T
Q  250 ttcct 254  Q
    |||||    
T  20044596 ttcct 20044600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 24147211 - 24147415
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  24147211 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 24147310  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| | | || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  24147311 tgagagtttttaagaagagcttggtcatttctttctcttctacatgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 24147410  T
Q  250 ttcct 254  Q
    |||||    
T  24147411 ttcct 24147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 619668 - 619872
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  619668 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 619767  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || | ||| | ||||||||| ||||| ||    
T  619768 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccgtcgctaggcatactccttgaacgt 619867  T
Q  250 ttcct 254  Q
    |||||    
T  619868 ttcct 619872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 9139923 - 9140125
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9139923 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9140022  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| ||||||||    
T  9140023 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcttt 9140122  T
Q  244 gaa 246  Q
    |||    
T  9140123 gaa 9140125  T

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Target: scaffold0019 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 17294 - 17527
Alignment:
Q  21 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 120  Q
    |||| ||||||| ||||||| | ||||| ||||||||||| |||||| ||||||||||||||||||| || ||||| ||| |||||||||||||| || |    
T  17294 cactggcagaagttccatctctgactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatttctgcaaagttcttgggcgtatt 17393  T
Q  121 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 220  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||  |||||||||||||||||||||||||| || |||| |||||| || ||||||    
T  17394 tccgaccatcttctcgtagtagaactgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgatttgggcagcagtatct 17493  T
Q  221 cttcatcgatgggcatactctttgaatgtttcct 254  Q
    || ||||| |||||||||||||||||||||||||    
T  17494 ctccatcgctgggcatactctttgaatgtttcct 17527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 32017 - 31784
Alignment:
Q  21 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 120  Q
    |||| ||||||| ||||||| ||||||| ||||||||||| | |||| ||||||||||||| ||||| |  ||||| ||| |||||||||||||| ||||    
T  32017 cactggcagaagttccatctctaactaaacgtccttctcggattccttcttccaactgtacgcccatactgaccatttctgcaaagttcttgggcgtact 31918  T
Q  121 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 220  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| || ||||||||||| || || |||    
T  31917 tccgaccatcctctcgtagtagaattgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgacttgggcagcagtgtct 31818  T
Q  221 cttcatcgatgggcatactctttgaatgtttcct 254  Q
    || ||||| ||||| |||||||||||||||||||    
T  31817 ctccatcgttgggcgtactctttgaatgtttcct 31784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 9879 - 10083
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  9879 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttctgaccatcttctcgtagtagaactgat 9978  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || ||||| ||||||||||| ||||||||    
T  9979 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcgctgggcatactccttgaatgt 10078  T
Q  250 ttcct 254  Q
    |||||    
T  10079 ttcct 10083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 3822 - 3969
Alignment:
Q  107 ttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgactt 206  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||    
T  3822 ttcttgggcgtacttctgaccatcttctcgtagtagaactgattgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgactt 3921  T
Q  207 gggccgcggtatctcttcatcgatgggcatactctttgaatgtttcct 254  Q
    |||| |||||||| || ||||| ||||||||||| |||||||||||||    
T  3922 gggcagcggtatccctccatcgctgggcatactccttgaatgtttcct 3969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 12431 - 12635
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  12431 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 12530  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    | |||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||| ||||||| ||||| |||||||| |||||||||||    
T  12531 taagagtttttaagaagagcttggtcatatctttctcttctacacgcgggctgacttgggcagcgatatctctccatcgctgggcatattctttgaatgt 12630  T
Q  250 ttcct 254  Q
    |||||    
T  12631 ttcct 12635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 16724575 - 16724788
Alignment:
Q  41 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 140  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  16724575 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagt 16724674  T
Q  141 agaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactc 240  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||| ||  ||  |||||||||| |||||||| || ||||| |||||||||||    
T  16724675 agaactgattgagagtttttaagaagagcttggtcatctctttctcttctacactcgggatgacttgggcagcggtatccctccatcgctgggcatactc 16724774  T
Q  241 tttgaatgtttcct 254  Q
     |||||||||||||    
T  16724775 cttgaatgtttcct 16724788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 18040019 - 18039815
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  18040019 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 18039920  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || |||||||| || ||||| ||||||||||| ||||||||    
T  18039919 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatccctccatcgctgggcatactccttgaatgt 18039820  T
Q  250 ttcct 254  Q
    |||||    
T  18039819 ttcct 18039815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 14921108 - 14920904
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||||||||||||||||||||||||| ||||    
T  14921108 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgcacttccgaccatcttctcgtagtagaactgat 14921009  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| |||| || || || ||||||||||| ||||||||    
T  14921008 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatccctccaacgctgggcatactccttgaatgt 14920909  T
Q  250 ttcct 254  Q
    |||||    
T  14920908 ttcct 14920904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 22707709 - 22707505
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |  ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  22707709 cgtccttctcggatcccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 22707610  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| ||  |||||||||| |||||||| || ||||| ||||||||||| ||||||||    
T  22707609 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggatgacttgggcagcggtatccctccatcgctgggcatactccttgaatgt 22707510  T
Q  250 ttcct 254  Q
    |||||    
T  22707509 ttcct 22707505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 15899271 - 15899472
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||  ||||    
T  15899271 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagatctgat 15899370  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    ||||||||||||| |||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || ||||| ||||||||||| ||||||||    
T  15899371 tgagagtttttaaaaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcgctgggcatactc-ttgaatgt 15899469  T
Q  250 ttc 252  Q
    |||    
T  15899470 ttc 15899472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 15571510 - 15571714
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||| ||||||||||||||||||||| ||||    
T  15571510 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggagaacttcagaccatcttctcgtagtagaactgat 15571609  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| |||| || || || ||||||||||| ||||||||    
T  15571610 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatccctccaacgctgggcatactccttgaatgt 15571709  T
Q  250 ttcct 254  Q
    |||||    
T  15571710 ttcct 15571714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 15575638 - 15575798
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  15575638 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 15575737  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 210  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||||||    
T  15575738 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggc 15575798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 21764034 - 21764267
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||||| |||||||||||  | |||||||||||| ||    
T  21764034 tccactagcagaagctccatcttttactaaacgtccttctcggactccttcttccaactgcacacccataccaaccatctcagcgaagttcttgggcgta 21764133  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||||  |||||||| ||||||||||||||||| || ||||||||||| ||   ||    
T  21764134 cttccgaccatcttctcgtagtagaactgactaagagtttttaagaagagtttggtcatttccttctcttctatacgcgggctgacttgggcagcaacat 21764233  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttc 252  Q
    | || || || || |||||||| |||||||||||    
T  21764234 ccctccaccgctgagcatactccttgaatgtttc 21764267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 12380298 - 12380096
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  12380298 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 12380199  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||||||||||||    
T  12380198 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcatactcttt 12380099  T
Q  244 gaa 246  Q
    |||    
T  12380098 gaa 12380096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 22946033 - 22945831
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  22946033 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 22945934  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| ||||||||    
T  22945933 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcttt 22945834  T
Q  244 gaa 246  Q
    |||    
T  22945833 gaa 22945831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 6198159 - 6197955
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  6198159 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 6198060  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||||||    
T  6198059 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaatgt 6197960  T
Q  250 ttcct 254  Q
    |||||    
T  6197959 ttcct 6197955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 21611505 - 21611301
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  21611505 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 21611406  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || ||||| ||||||||||| ||||||||    
T  21611405 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcgctgggcatactccttgaatgt 21611306  T
Q  250 ttcct 254  Q
    |||||    
T  21611305 ttcct 21611301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 20439800 - 20439567
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||    
T  20439800 tccactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgta 20439701  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || ||||||||||| ||   ||    
T  20439700 cttccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggcagcaacat 20439601  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttc 252  Q
    |||| || || || ||||||||||||||||||||    
T  20439600 ctctccaccgctgagcatactctttgaatgtttc 20439567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 41436965 - 41436732
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||    
T  41436965 tccactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgta 41436866  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || ||||||||||| ||   ||    
T  41436865 cttccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggcagcaacat 41436766  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttc 252  Q
    |||| || || || ||||||||||||||||||||    
T  41436765 ctctccaccgctgagcatactctttgaatgtttc 41436732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 8808075 - 8807871
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  8808075 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 8807976  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| |||||||| || ||||| ||||||||||| |||| |||    
T  8807975 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatccctccatcgctgggcatactccttgattgt 8807876  T
Q  250 ttcct 254  Q
    |||||    
T  8807875 ttcct 8807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 15533637 - 15533841
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  15533637 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 15533736  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  15533737 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 15533836  T
Q  250 ttcct 254  Q
    |||||    
T  15533837 ttcct 15533841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 46397011 - 46397215
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  46397011 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 46397110  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  46397111 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 46397210  T
Q  250 ttcct 254  Q
    |||||    
T  46397211 ttcct 46397215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 8620200 - 8619995
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  8620200 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 8620101  T
Q  150 tgagagt-ttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatg 248  Q
    ||||||| ||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| |    
T  8620100 tgagagttttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacg 8620001  T
Q  249 tttcct 254  Q
    ||||||    
T  8620000 tttcct 8619995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 15596519 - 15596754
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| ||||||| | ||||||| ||||| ||||||| ||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||    
T  15596519 tccactggcagaagttgcatcttttactaaacgtccttgtcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgta 15596618  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    ||||| |||||| | |||||||||||    ||||||||||||||||||| ||||||||||||||| || |||||||| ||  |||||||||| |||||||    
T  15596619 cttccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagcttggtcatctccttttcctctatacgcgggttgacttgggcagcggtat 15596718  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttcct 254  Q
    |||| ||||| || || ||||| |||||||||||||    
T  15596719 ctctccatcgctgtgcgtactccttgaatgtttcct 15596754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 15915202 - 15914967
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||    
T  15915202 tccactggcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgta 15915103  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    ||||| |||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||  ||  |||||||||| | |||||    
T  15915102 cttccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacacgggttgacttgggcagtggtat 15915003  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttcct 254  Q
    |||| ||||| || || ||||| |||||||||||||    
T  15915002 ctctccatcgctgtgcgtactccttgaatgtttcct 15914967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 46376913 - 46376711
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  46376913 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 46376814  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||||||||||||    
T  46376813 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcatactcttt 46376714  T
Q  244 gaa 246  Q
    |||    
T  46376713 gaa 46376711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 5954477 - 5954679
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| ||||| || ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5954477 actaagcgtccttctcggactccttcttctaactggactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5954576  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||||||||||||    
T  5954577 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcatactcttt 5954676  T
Q  244 gaa 246  Q
    |||    
T  5954677 gaa 5954679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 21479703 - 21479907
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  21479703 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 21479802  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||    
T  21479803 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatccctccatcgctgggcatactccttgaacgt 21479902  T
Q  250 ttcct 254  Q
    |||||    
T  21479903 ttcct 21479907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 47 - 254
Target Start/End: Complemental strand, 2287 - 2080
Alignment:
Q  47 aaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaatt 146  Q
    |||||||||||||| |||||| ||||||||||||| ||||| |||||||||||  ||||||||| |||| |||||||||||||||||||||||||||| |    
T  2287 aaccgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttctagggcgtacttccgaccatcttctcgtagtagaact 2188  T
Q  147 gattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaa 246  Q
    ||||||||||||||||||||| |||||||||||| || ||||||| ||| ||  ||||||| || ||| |||| || ||||| ||||||||||| |||||    
T  2187 gattgagagtttttaagaagagcttggtcatctctttttcttctacacgcgggatgacttgtgcagcgttatccctccatcgctgggcatactccttgaa 2088  T
Q  247 tgtttcct 254  Q
    ||||||||    
T  2087 tgtttcct 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 28843 - 29076
Alignment:
Q  21 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 120  Q
    |||| ||||||| || |||| ||||||| ||||||||||| ||||||  ||||||||||||  |||| |||||||||||  |||||||||||||| ||||    
T  28843 cactggcagaagttctatctctaactaaacgtccttctcggactcctttttccaactgtacgtccataccaaccatctcagcaaagttcttgggcgtact 28942  T
Q  121 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacg-aggactgacttgggccgcggtatc 219  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||| ||||||| |  ||| |||| |||||||||| ||||||||    
T  28943 tccgaccatcttctcgtagtagaactgattgagggtttttaagaagagtttggtcatctctttctcttatgcacgcagga-tgacttgggcagcggtatc 29041  T
Q  220 tcttcatcgatgggcatactctttgaatgtttcct 254  Q
     || ||||| ||| |||||||||||||||||||||    
T  29042 cctccatcgctggccatactctttgaatgtttcct 29076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 10795 - 10591
Alignment:
Q  50 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 149  Q
    |||| ||||||||||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||| ||||||||||||||||||| ||||    
T  10795 cgtctttctcgtactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgtccatcttctcgtagtagaactgat 10696  T
Q  150 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctttgaatgt 249  Q
    |||||||||||||||||| |||||||||||| |||||||||| | | ||  ||||||||||  || |||| || || || ||||||||||| ||||||||    
T  10695 tgagagtttttaagaagagcttggtcatctctttctcttctacatgcgggatgacttgggcatcgatatccctccaacgctgggcatactccttgaatgt 10596  T
Q  250 ttcct 254  Q
    |||||    
T  10595 ttcct 10591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 38868 - 39103
Alignment:
Q  19 tccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcata 118  Q
    |||||| ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||    
T  38868 tccactggcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgta 38967  T
Q  119 cttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtat 218  Q
    ||||| |||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||| ||  |||||||||| | |||||    
T  38968 cttccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacgcgggttgacttgggcagtggtat 39067  T
Q  219 ctcttcatcgatgggcatactctttgaatgtttcct 254  Q
    |||| ||||| || || ||||| |||||||||||||    
T  39068 ctctccatcgctgtgcgtactccttgaatgtttcct 39103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 74936 - 74786
Alignment:
Q  41 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 140  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| |||| |||||||||||||||||||    
T  74936 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtactgccgaccatcttctcgtagt 74837  T
Q  141 agaattgattgagagtttttaagaagatcttggtcatctccttctcttcta 191  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||    
T  74836 agaactgattgagagtttttaagaagagcttggtcatctctttctcttcta 74786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 25801 - 25599
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  25801 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 25702  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| ||||||||    
T  25701 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactcttt 25602  T
Q  244 gaa 246  Q
    |||    
T  25601 gaa 25599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 302544 - 302342
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  302544 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 302445  T
Q  144 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactcttt 243  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||||||||||||    
T  302444 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcatactcttt 302345  T
Q  244 gaa 246  Q
    |||    
T  302344 gaa 302342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 252
Target Start/End: Complemental strand, 9619 - 9410
Alignment:
Q  44 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 143  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| || |||||||| | ||| || |    
T  9619 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccaaccatctttttgtaataaa 9520  T
Q  144 at-tgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcatcgatgggcatactctt 242  Q
    |  ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || || ||||| |||||||    
T  9519 aaatgatttaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctctccaccgttgggcgtactctt 9420  T
Q  243 tgaatgtttc 252  Q
    |||| |||||    
T  9419 tgaacgtttc 9410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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