View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_208 (Length: 252)
Name: NF6876A_low_208
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_208 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 37552447 - 37552214
Alignment:
| Q |
1 |
tcagtgtaaaacatttttgcactttcagtgcttacaattaaattaaattactcattgaataccacacgatgtctctttgccctaatgaaatgtttactgt |
100 |
Q |
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| T |
37552447 |
tcagtgtaaaacatttttgcactttcagtgcttacaattaaattaaattactcattgaataccacacgatgtctctttgccttaatgaaatgtttactgt |
37552348 |
T |
|
| Q |
101 |
attatactaatgaagacaagccattttctgaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatttgcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37552347 |
attatactaatgaagacaagccattttctgaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatttgcaca |
37552248 |
T |
|
| Q |
201 |
tacttctccttgttcaaaattggaaggctgatgt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37552247 |
tacttctccttgttcaaaattggaaggctgatgt |
37552214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 39363433 - 39363329
Alignment:
| Q |
130 |
gaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatttgcacatacttctccttgttcaaaattggaaggct |
229 |
Q |
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||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| |||| | | |
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| T |
39363433 |
gaatcacttaccttcaatttcttgtacaggcatttgcttttgttccactcatgtacatgtgcatctgtacatactactctttgttcaaaatcggaatgtt |
39363334 |
T |
|
| Q |
230 |
gatgt |
234 |
Q |
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||||| |
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| T |
39363333 |
gatgt |
39363329 |
T |
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