View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_21 (Length: 444)

Name: NF6876A_low_21
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_21
NF6876A_low_21
[»] chr6 (4 HSPs)
chr6 (16-132)||(17605141-17605255)
chr6 (16-132)||(17576524-17576638)
chr6 (16-128)||(21628933-21629043)
chr6 (63-124)||(15955798-15955859)
[»] chr3 (3 HSPs)
chr3 (16-132)||(12333895-12334009)
chr3 (16-132)||(19891896-19892009)
chr3 (61-121)||(32518348-32518408)
[»] chr8 (2 HSPs)
chr8 (16-132)||(20825519-20825633)
chr8 (234-302)||(16361610-16361677)
[»] chr5 (4 HSPs)
chr5 (16-132)||(25856246-25856360)
chr5 (16-100)||(33384812-33384894)
chr5 (86-130)||(12833188-12833232)
chr5 (86-130)||(12865166-12865210)
[»] chr4 (3 HSPs)
chr4 (232-324)||(26826396-26826494)
chr4 (325-362)||(26827306-26827343)
chr4 (86-130)||(20508780-20508824)
[»] chr2 (2 HSPs)
chr2 (61-121)||(33410924-33410984)
chr2 (16-132)||(33515000-33515114)
[»] scaffold1350 (1 HSPs)
scaffold1350 (29-130)||(776-875)
[»] scaffold0031 (1 HSPs)
scaffold0031 (82-127)||(67738-67783)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 17605255 - 17605141
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaa 115  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17605255 gacaccactaccggattagcgcctcccacactgtaacccgtaaagacat--ttgcttcaaccatggctttcatcaacacatttaacccttctgcagctaa 17605158  T
Q  116 caaaaacaagaaaggag 132  Q
    |||||||||||||||||    
T  17605157 caaaaacaagaaaggag 17605141  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 17576638 - 17576524
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaa 115  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||  | |||||||||||||||||||||| ||||||||    
T  17576638 gacaccacgacaggattagtgccacccacactgtaacccgtaaagacat--tggcttcaaccatggatgtcatcaacacatttaacccttcagcagctaa 17576541  T
Q  116 caaaaacaagaaaggag 132  Q
    ||||||||| |||||||    
T  17576540 caaaaacaaaaaaggag 17576524  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 21629043 - 21628933
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaa 115  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||||  |||||||||||||  |||||||||| | |||||||||||||||||||||    
T  21629043 gacaccactacagaattagcgcctcccacactgtaacccgtaaagacat--ttgcttcaaccatagctttcatcaagatatttaacccttctgcagctaa 21628946  T
Q  116 caaaaacaagaaa 128  Q
    |||||||||||||    
T  21628945 caaaaacaagaaa 21628933  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 15955859 - 15955798
Alignment:
Q  63 atatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaa 124  Q
    |||||||||||||||||   ||||||||| ||||| ||||||||| | ||||| ||||||||    
T  15955859 atatttgcttcaaccattgttttcatcaaaacattcaacccttctactgctaataaaaacaa 15955798  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 12334009 - 12333895
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaa 115  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  12334009 gacaccactacaggattagcgcctcccacactgtaacccgtaaagacat--ttccttcaaccatggctttcatcaacacatttaacccttctgcagctaa 12333912  T
Q  116 caaaaacaagaaaggag 132  Q
    || ||||||||||||||    
T  12333911 cagaaacaagaaaggag 12333895  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 19891896 - 19892009
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaa 115  Q
    |||||||||||| |||||| ||| ||||| ||||| |||||||||||||  |||||||||||| | ||||||||| |||||| || |||||||| |||||    
T  19891896 gacatcactacaagattagcgcc-cccactctgtatcccgtaaagacat--ttgcttcaaccaaggctttcatcaccacattcaaaccttctgctgctaa 19891992  T
Q  116 caaaaacaagaaaggag 132  Q
    |||||||||||||||||    
T  19891993 caaaaacaagaaaggag 19892009  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 32518348 - 32518408
Alignment:
Q  61 acatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaa 121  Q
    |||||||||| |||||||    ||||||||||||||| |||||||||||||| ||||||||    
T  32518348 acatatttgcatcaaccacagatttcatcaacacattgaacccttctgcagccaacaaaaa 32518408  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 20825519 - 20825633
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaa 115  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||  | |||||||||||||||||||||| ||||||||    
T  20825519 gacaccacgacaggattagtgccacccacactgtaacccgtaaagacat--tggcttcaaccatggatgtcatcaacacatttaacccttcagcagctaa 20825616  T
Q  116 caaaaacaagaaaggag 132  Q
    ||||||||| |||||||    
T  20825617 caaaaacaaaaaaggag 20825633  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 16361610 - 16361677
Alignment:
Q  234 tattaattgtccttgcggtgatcctatggtttccaatttcttagtagtttttattttaatttataaaat 302  Q
    |||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  16361610 tattaattgtgctt-cggttatcctatgatttccaatttcttagtagtttttattttattttataaaat 16361677  T

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Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 25856360 - 25856246
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaa 115  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||  | |||||||||||||||||||||| ||||||||    
T  25856360 gacaccacgacaggattagtgccacccacactgtaacccgtaaagacat--tggcttcaaccatggatgtcatcaacacatttaacccttcagcagctaa 25856263  T
Q  116 caaaaacaagaaaggag 132  Q
    ||||||||| |||||||    
T  25856262 caaaaacaaaaaaggag 25856246  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 33384894 - 33384812
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaa 100  Q
    |||| |||||| ||||||| ||| |||||||||||||| |||||||||   |||||||||||||| |||||||||||||||||||    
T  33384894 gacaccactactggattagcgcctcccacactgtaacctgtaaagacac--ttgcttcaaccatggctttcatcaacacatttaa 33384812  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 12833188 - 12833232
Alignment:
Q  86 catcaacacatttaacccttctgcagctaacaaaaacaagaaagg 130  Q
    |||||||||||  |||||||| ||||||| |||||||||||||||    
T  12833188 catcaacacatgaaacccttccgcagctagcaaaaacaagaaagg 12833232  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 12865166 - 12865210
Alignment:
Q  86 catcaacacatttaacccttctgcagctaacaaaaacaagaaagg 130  Q
    |||||||||||  |||||||| ||||||| |||||||||||||||    
T  12865166 catcaacacatgaaacccttccgcagctagcaaaaacaagaaagg 12865210  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 26826396 - 26826494
Alignment:
Q  232 tatattaattgtccttgcggtgatcct------atggtttccaatttcttagtagtttttattttaatttataaaatgcacttttgttcagtttaatgg 324  Q
    |||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||    
T  26826396 tatattaattgtccttgcggtgatcctattcctatggtttccaatttcttagtagtttttattttaatctataaacagcacttttgttcagttaaatgg 26826494  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 26827306 - 26827343
Alignment:
Q  325 cctaatgagtttgttacttggtttggcaaggggcacac 362  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26827306 cctaatgagtttgttacttggtttggcaaggggcacac 26827343  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 20508824 - 20508780
Alignment:
Q  86 catcaacacatttaacccttctgcagctaacaaaaacaagaaagg 130  Q
    |||||||||||  |||||||| ||||||| |||||||||||||||    
T  20508824 catcaacacatgaaacccttccgcagctagcaaaaacaagaaagg 20508780  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 33410984 - 33410924
Alignment:
Q  61 acatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaa 121  Q
    ||||||| || |||||||  ||||||||||||||||| || ||||||||||| ||||||||    
T  33410984 acatattagcatcaaccaccactttcatcaacacattgaaaccttctgcagccaacaaaaa 33410924  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 33515114 - 33515000
Alignment:
Q  16 gacatcactacaggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaa 115  Q
    |||| |||||| ||||||  ||| ||||||||||||||||| || ||  |||||| ||||||| | |||||||||| ||||| |  ||||| || |||||    
T  33515114 gacaccactactggattatcgccccccacactgtaacccgtgaaaac--atttgcatcaaccaaggctttcatcaagacattcagaccttcagctgctaa 33515017  T
Q  116 caaaaacaagaaaggag 132  Q
     || |||||||| ||||    
T  33515016 gaagaacaagaagggag 33515000  T

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Target: scaffold1350 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 776 - 875
Alignment:
Q  29 gattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaaa 128  Q
    |||||| ||| |||||  |||| ||||||||||  |||||||||| |||| | ||| |||||||||||| |  |||| ||| |||||||||||||| |||    
T  776 gattagcgccccccaccttgtatcccgtaaaga--tatttgcttccaccaaggcttgcatcaacacattgagtccttatgctgctaacaaaaacaaaaaa 873  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 67738 - 67783
Alignment:
Q  82 ctttcatcaacacatttaacccttctgcagctaacaaaaacaagaa 127  Q
    |||||||||||||||| |||||||| ||||| || |||||||||||    
T  67738 ctttcatcaacacattcaacccttcagcagccaataaaaacaagaa 67783  T

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