View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_210 (Length: 251)
Name: NF6876A_low_210
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_210 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 32869042 - 32868804
Alignment:
| Q |
1 |
ataagttgtccatgcaaaaaataagggtataaagatcacgatgtaaaacgacaatgaaagaatgccatgataatataaacttttgtaatataagaaagag |
100 |
Q |
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| T |
32869042 |
ataagttgtccatgcaaaaaataagggtataaagatcacgatgtaaaacgacaatgaaagaatgctatgataatataaacttttgtaatataagaaagag |
32868943 |
T |
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| Q |
101 |
ttatcgacatgctgggcggacctgttaaggtcttggtgtggcaagtgtcacaccgaagatccaaatttttaaattttttaaactagtgcagtgcatttga |
200 |
Q |
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| T |
32868942 |
ttatcgacatgctgggcggacctgttaaggtcttggtgtggtaagtgtcacaccgaagatccaaatttttaaattttttaaactagtgcagtgcatttga |
32868843 |
T |
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| Q |
201 |
tgcaacacaaagattattgttctaactttgcctcatatt |
239 |
Q |
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| T |
32868842 |
tgcaacacaaagattattgttctaactttgcctcatatt |
32868804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 17109312 - 17109268
Alignment:
| Q |
192 |
tgcatttgatgcaacacaaagattattgttctaactttgcctcat |
236 |
Q |
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| T |
17109312 |
tgcatttgatgcagcacaaagaggattgttctacctttgcctcat |
17109268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 18114152 - 18114213
Alignment:
| Q |
178 |
ttaaactagtgcagtgcatttgatgcaacacaaagattattgttctaactttgcctcatatt |
239 |
Q |
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| T |
18114152 |
ttaaactagtgtagtgcatttgatgcaacacaaagagtattgttctacctttgcctcatatt |
18114213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 4136925 - 4136965
Alignment:
| Q |
114 |
gggcggacctgttaaggtcttggtgtggcaagtgtcacacc |
154 |
Q |
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| T |
4136925 |
gggcggacctgttaaggtcctggtgtggcaagtgtcacacc |
4136965 |
T |
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