View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_214 (Length: 251)
Name: NF6876A_low_214
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_214 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 247
Target Start/End: Complemental strand, 9868088 - 9867844
Alignment:
| Q |
3 |
tcgaagaatataccacacacatcaaaccctatccttaattcaacatacaaaaattgctttggaacattggtgaaatataaagaagcgacgccagtctctc |
102 |
Q |
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| T |
9868088 |
tcgaacaatataccacacacatcaaaccctttccttaattcaacatacaaaaattgctttggaacattggtgaaatataaggaagcgacgccagtctctc |
9867989 |
T |
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| Q |
103 |
tttgatcatgatttcgtcatgcatcgtgaatatgatgattgagtcatatttgtttagccatgcatgactaaattccacgtgaataaaacttttctagaca |
202 |
Q |
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| T |
9867988 |
tttgatcatgatttcgccatgcatcgtgaatatgatgattgaatcatatttgtttagccatgcatgactaaattccacgttaataaaacttttctagatg |
9867889 |
T |
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| Q |
203 |
gtgtgatccaattaccactaatatcgctactaaaggcaaatcaca |
247 |
Q |
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| T |
9867888 |
gtgtgatccaattaccactacgatcgctactaaaggcaaaccaca |
9867844 |
T |
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