View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_22 (Length: 441)

Name: NF6876A_low_22
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_22
NF6876A_low_22
[»] chr5 (1 HSPs)
chr5 (13-441)||(3591978-3592410)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Original strand, 3591978 - 3592410
Alignment:
Q  13 atggacatcaacattggttcacttttttcttttagttaatatgcaagactttatgtctcaattgcaggttacttatgcctaaatatatttgagtcctcaa 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3591978 atggacatcaacattggttcacttttttcttgtagttaatatgcaagactttatgtctcaattgcaggttacttatgcctaaatatatttgagtcctcaa 3592077  T
Q  113 catggttttaaattgcagttgtgcctgtcgttgctataactttgcaattttgacattgtcgataaatgcggttcctccaaaacatttgtattgcagccgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3592078 catggttttaaattgcagttgtgcctgtcgttgctataactttgcaattttgacattgtcgataaatgcggttcctccaaaacatttgtattgcagccgc 3592177  T
Q  213 atttacgatttaaaacttaagtccacaatataaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcaatgtacaatgaagtcagc 312  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3592178 atttacgatttaaaacttaagtccacaatatgaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcaatgtacaatgaagtcagc 3592277  T
Q  313 aataactgcatttccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagat----caaacaatctaagc 408  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  3592278 gataactgcatttccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagatcgaccaaacaatctaagc 3592377  T
Q  409 aacagttatccaaaagtttatggatactaatgt 441  Q
    |||||||||||||||||||||||||||||||||    
T  3592378 aacagttatccaaaagtttatggatactaatgt 3592410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University