View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_220 (Length: 250)
Name: NF6876A_low_220
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_220 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 19103037 - 19102811
Alignment:
| Q |
3 |
ctgcataaactccatttccttccgcaatgtgggatgcactgtctcgttaggatcagttgctatagaactaacatctaaattttgaacaggcgataaaatt |
102 |
Q |
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| T |
19103037 |
ctgcataaactccatttccttccgcaacgtgggatgcactgtcgcgttaggatcagctgctatagaactatcatctaaattttgaacaggcgataaaatt |
19102938 |
T |
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| Q |
103 |
ggtccatgatatgtaagatcatttggtaccacttcatcagtcatatttacaagcggcatgctaaaagaattatgagagatatcaatattgcaatttaccg |
202 |
Q |
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| T |
19102937 |
ggtccatgatatgtaaggtcatttggtaccacttcatcagtcatatttgcaagcggcatgctaaaagaattatgagagatatcaatattgcgatttaccg |
19102838 |
T |
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| Q |
203 |
taacatctggagaaggtgatatggttg |
229 |
Q |
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| T |
19102837 |
taacatctggagaaggtgatatggttg |
19102811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 33952573 - 33952709
Alignment:
| Q |
1 |
gtctgcataaactccatttccttccgcaatgtgggatgcactgtctcgttaggatcagttgctatagaactaacatctaaattttgaacaggcgataaaa |
100 |
Q |
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| T |
33952573 |
gtctgcataaactctatttccttccgcaacgtgggatgcactgtcgcattaggatcaactgctatagaactaacatctaaattttgaacaggcgataaaa |
33952672 |
T |
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| Q |
101 |
ttggtccatgatatgtaagatcatttggtaccacttc |
137 |
Q |
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| T |
33952673 |
ttggtccatgatatgtaaggtcattttgtaccacttc |
33952709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 36030634 - 36030692
Alignment:
| Q |
170 |
aattatgagagatatcaatattgcaatttaccgtaacatctggagaaggtgatatggtt |
228 |
Q |
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|||| ||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |
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| T |
36030634 |
aattctgagagatatcaatattgcgatttaccataacattcagagaaggtgatatggtt |
36030692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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