View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_224 (Length: 250)
Name: NF6876A_low_224
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_224 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 44682876 - 44683108
Alignment:
| Q |
18 |
acatcacataaattttagctaatgtgataagttgtgtgcatcaaacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgtt |
117 |
Q |
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| T |
44682876 |
acatcacataaattttagctaatgtgataagttgtgtgcatcaaacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgtt |
44682975 |
T |
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| Q |
118 |
catcttttgaccaaatggatcgtttttcaataaattcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatatt |
217 |
Q |
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| T |
44682976 |
catcttttgaccaaatggatcgtttttcaataaattcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatatt |
44683075 |
T |
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| Q |
218 |
cccactgcatgccaaattcccgctacgattgaa |
250 |
Q |
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| T |
44683076 |
cccactgcatgccaaattccagctacgattgaa |
44683108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 44659774 - 44659930
Alignment:
| Q |
61 |
aacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgttcatcttttgaccaaatggatcgtttttcaataaattcatgaac |
160 |
Q |
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| T |
44659774 |
aacaagcacaatttctagaaccaacgtcgttcgcaatgcatggaggctgaaattgttcatctttataccaaatggattgtttttcagtaaattcacggac |
44659873 |
T |
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| Q |
161 |
aaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatatt |
217 |
Q |
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| T |
44659874 |
aaatgagtcgagcatttcaacagtaacgtgcttcaacactaccacatgtgcagtatt |
44659930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 44640000 - 44640090
Alignment:
| Q |
127 |
accaaatggatcgtttttcaataaattcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatatt |
217 |
Q |
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| T |
44640000 |
accaaattgctcgttttttagtaaactcatcaacaaatgagtccaacatttcaatagtaacatgttgcatcaccaccacatgtgcaatatt |
44640090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 44668333 - 44668402
Alignment:
| Q |
147 |
ataaattcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatat |
216 |
Q |
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| T |
44668333 |
ataaactcatcaacaaaggagtccaacatttcaacagtaacgtgctgcatcaccaccacatgtgcaatat |
44668402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 217
Target Start/End: Complemental strand, 29342009 - 29341853
Alignment:
| Q |
61 |
aacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgttcatcttttgaccaaatggatcgtttttcaataaattcatgaac |
160 |
Q |
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| T |
29342009 |
aacaagcacaatttttagaaccaacgtcgcttgcaatacatggaggttgaaagtgtccatctttagaccaaatcgatcgtttttggataaattcatgaac |
29341910 |
T |
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| Q |
161 |
aaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatatt |
217 |
Q |
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| T |
29341909 |
aaaggtgtcaagcatttcaatagtaatgtgcttcaacactaccacatgtgcaatatt |
29341853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 29358045 - 29357860
Alignment:
| Q |
52 |
tgtgcatcaaacaagcacaatttttggaaccaacatcatttgcaatgcatagaggcttaaattgttcatcttttgaccaaatggatcgtttttcaataaa |
151 |
Q |
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| T |
29358045 |
tgtgtatcgaacaagcacaatttctagaaccaacgtcgcttgcaatacatggaagctgaaattgtccatctttagaccaaatcgatcgtttttggataaa |
29357946 |
T |
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| Q |
152 |
ttcatgaacaaaggtgtccaacatttcaacagaaacatgttgtaacactaccacatgtgcaatattcccactgcatgccaaattcc |
237 |
Q |
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| T |
29357945 |
ttcacaaacaaaggtgtcaagcatttcaatagtaatgtgcttcaacactaccacatgtgcaatatttccattgcttgctaaattcc |
29357860 |
T |
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