View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_225 (Length: 250)

Name: NF6876A_low_225
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_225
NF6876A_low_225
[»] chr7 (18 HSPs)
chr7 (17-250)||(4828653-4828886)
chr7 (77-250)||(30405518-30405690)
chr7 (86-250)||(37144851-37145015)
chr7 (87-238)||(9755732-9755883)
chr7 (87-238)||(9800529-9800679)
chr7 (133-250)||(17881518-17881635)
chr7 (87-250)||(7361652-7361816)
chr7 (86-198)||(8606001-8606112)
chr7 (169-244)||(1074466-1074541)
chr7 (92-150)||(21543071-21543129)
chr7 (122-250)||(7372585-7372710)
chr7 (169-250)||(1255233-1255314)
chr7 (173-250)||(21545819-21545896)
chr7 (173-249)||(18496583-18496659)
chr7 (170-250)||(22067826-22067906)
chr7 (138-250)||(24597023-24597135)
chr7 (87-250)||(4977840-4978004)
chr7 (169-244)||(29544533-29544608)
[»] scaffold0065 (1 HSPs)
scaffold0065 (86-209)||(12033-12156)
[»] chr2 (18 HSPs)
chr2 (87-238)||(29647577-29647728)
chr2 (87-250)||(27918003-27918165)
chr2 (87-250)||(19540969-19541132)
chr2 (143-250)||(17415215-17415322)
chr2 (169-250)||(21843022-21843103)
chr2 (99-250)||(24047326-24047477)
chr2 (122-244)||(22510914-22511035)
chr2 (169-250)||(21844649-21844730)
chr2 (98-250)||(22388773-22388924)
chr2 (169-250)||(17152167-17152248)
chr2 (173-250)||(21505159-21505236)
chr2 (169-250)||(35031716-35031797)
chr2 (178-250)||(34063865-34063937)
chr2 (169-250)||(21849093-21849174)
chr2 (182-244)||(24187993-24188055)
chr2 (137-247)||(32276536-32276646)
chr2 (221-250)||(30705268-30705297)
chr2 (182-250)||(39730474-39730542)
[»] chr5 (18 HSPs)
chr5 (86-250)||(23157808-23157975)
chr5 (87-244)||(20694572-20694729)
chr5 (141-250)||(19331497-19331606)
chr5 (172-250)||(18222510-18222588)
chr5 (137-250)||(20083448-20083560)
chr5 (87-210)||(22643924-22644047)
chr5 (169-248)||(24841767-24841846)
chr5 (169-250)||(17382055-17382136)
chr5 (172-248)||(7742891-7742967)
chr5 (175-250)||(25680616-25680691)
chr5 (172-250)||(16634063-16634141)
chr5 (90-156)||(25367555-25367621)
chr5 (181-250)||(24268581-24268650)
chr5 (181-250)||(24345210-24345279)
chr5 (169-250)||(24410949-24411030)
chr5 (169-248)||(24517368-24517447)
chr5 (170-250)||(15205658-15205738)
chr5 (170-250)||(16622687-16622767)
[»] scaffold0337 (1 HSPs)
scaffold0337 (93-209)||(1604-1720)
[»] chr6 (6 HSPs)
chr6 (93-209)||(24507645-24507761)
chr6 (178-250)||(17860468-17860540)
chr6 (169-250)||(26512797-26512878)
chr6 (169-250)||(26517913-26517994)
chr6 (169-250)||(13759471-13759552)
chr6 (169-250)||(14768288-14768369)
[»] chr3 (16 HSPs)
chr3 (86-250)||(28422384-28422547)
chr3 (87-247)||(21829155-21829315)
chr3 (137-250)||(11474828-11474941)
chr3 (178-250)||(33577757-33577829)
chr3 (178-248)||(19546005-19546075)
chr3 (169-250)||(8402570-8402651)
chr3 (169-250)||(26297763-26297844)
chr3 (137-250)||(26387864-26387977)
chr3 (159-250)||(18474175-18474265)
chr3 (172-250)||(13911282-13911360)
chr3 (169-250)||(1475300-1475381)
chr3 (185-250)||(30493284-30493349)
chr3 (178-250)||(27374471-27374543)
chr3 (87-132)||(5632628-5632673)
chr3 (169-250)||(11521154-11521234)
chr3 (170-250)||(33914583-33914662)
[»] chr4 (12 HSPs)
chr4 (122-250)||(19601765-19601893)
chr4 (137-247)||(21077215-21077325)
chr4 (87-250)||(22119578-22119741)
chr4 (137-243)||(21167711-21167817)
chr4 (173-250)||(27302796-27302873)
chr4 (169-248)||(9288224-9288303)
chr4 (181-244)||(10576479-10576542)
chr4 (169-250)||(1676315-1676396)
chr4 (169-250)||(1682843-1682924)
chr4 (169-250)||(9783003-9783084)
chr4 (169-241)||(12111360-12111433)
chr4 (169-250)||(17339833-17339914)
[»] chr8 (15 HSPs)
chr8 (122-250)||(24584744-24584872)
chr8 (87-250)||(30543695-30543856)
chr8 (169-250)||(14977126-14977208)
chr8 (170-250)||(35135442-35135522)
chr8 (169-248)||(12956503-12956582)
chr8 (178-250)||(12774863-12774935)
chr8 (178-250)||(14424832-14424904)
chr8 (142-247)||(13583532-13583637)
chr8 (169-250)||(32239301-32239382)
chr8 (86-201)||(11437350-11437465)
chr8 (87-250)||(30851119-30851282)
chr8 (169-250)||(28901360-28901441)
chr8 (169-250)||(29291785-29291865)
chr8 (170-250)||(5570161-5570241)
chr8 (169-241)||(28902103-28902175)
[»] chr1 (18 HSPs)
chr1 (169-250)||(23223425-23223507)
chr1 (137-248)||(25126462-25126573)
chr1 (87-150)||(52271363-52271426)
chr1 (137-247)||(18795163-18795273)
chr1 (173-250)||(19884190-19884267)
chr1 (169-250)||(25494499-25494580)
chr1 (102-247)||(26854340-26854485)
chr1 (178-250)||(26102080-26102152)
chr1 (172-250)||(15298889-15298967)
chr1 (169-247)||(50047195-50047273)
chr1 (169-250)||(12810336-12810417)
chr1 (169-246)||(26657490-26657567)
chr1 (169-250)||(30675498-30675579)
chr1 (178-250)||(19257823-19257895)
chr1 (178-248)||(11770016-11770086)
chr1 (181-250)||(15416993-15417062)
chr1 (173-250)||(18391100-18391177)
chr1 (139-219)||(21550930-21551010)
[»] scaffold0043 (1 HSPs)
scaffold0043 (98-250)||(58688-58840)
[»] scaffold0190 (1 HSPs)
scaffold0190 (87-250)||(11717-11880)
[»] scaffold0171 (2 HSPs)
scaffold0171 (183-250)||(21425-21492)
scaffold0171 (172-241)||(6213-6282)
[»] scaffold1026 (1 HSPs)
scaffold1026 (172-250)||(1853-1931)
[»] scaffold1149 (1 HSPs)
scaffold1149 (92-209)||(1723-1839)
[»] scaffold0188 (1 HSPs)
scaffold0188 (218-247)||(26978-27007)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 4828653 - 4828886
Alignment:
Q  17 gacatcaccttaaatttagaataaaagtggagaattgttgaattttaactcaaagtttgatgttggtgcttgatgatggaataacatatgatatttttag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4828653 gacatcaccttaaatttagaataaaagtggagaattgttgaattttaactcaaagtttgatgttggtgcttgatgatggaataacatatgatatttttag 4828752  T
Q  117 ctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4828753 ctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcga 4828852  T
Q  217 ttcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||||||||||||||||||||||||||||||    
T  4828853 ttcattgtaatttacttttatcctaaatcatgca 4828886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 30405518 - 30405690
Alignment:
Q  77 tgttggtgcttgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagtt 176  Q
    ||||||| | |||||||||||||||||||||||||||| ||| | ||| |||||||||| |||||||||||||| |||||  ||||| ||| ||||||||    
T  30405518 tgttggtacatgatgatggaataacatatgatattttttgctatgtttctagtgtaattctttgcatttgaaggtaaattagaagtcaattagaggagtt 30405617  T
Q  177 ttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
     | ||||||||||||||||||||||||| |||||| | || ||||||||||| || ||||||||||| ||||||    
T  30405618 gttaatggtttgaggaactttttgtattgtttttatttgactcattgtaattcac-tttatcctaaaccatgca 30405690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 37144851 - 37145015
Alignment:
Q  86 ttgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggt 185  Q
    ||||||||||||||||||||||| | |||| || | |||||||| ||||| |||| ||||||||| |||||  ||||| ||| |||||||| ||| || |    
T  37144851 ttgatgatggaataacatatgatgtatttaactatgtttttagtataattctttggatttgaaggcaaatttgaagtcaattagaggagttgtcattgtt 37144950  T
Q  186 ttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||  ||||||||||||| |||| | || | || ||||||| || |||||||||||||||||||    
T  37144951 ttgaaaaactttttgtattattttcattcaagtcgttgtaatatatttttatcctaaatcatgca 37145015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 9755732 - 9755883
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    |||||||| ||||||||||||||||| ||||| | |||||||| || ||  ||||||||||||| |||||  ||||| ||| ||||| || ||| | |||    
T  9755732 tgatgatgaaataacatatgatatttgtagctatgtttttagtatattttcttgcatttgaaggcaaattataagtcaattagaggaattgtcactagtt 9755831  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatc 238  Q
    |||||||| ||||||||| |||| | |||| || ||||||||||||||||||    
T  9755832 tgaggaacgttttgtatttttttcactcgagtcgttgtaatttacttttatc 9755883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 9800529 - 9800679
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    |||||||||||||||||||||||||| |||| |  |||||||| || ||  |||||||||||||||||||  ||||| ||| ||||| || ||| | |||    
T  9800529 tgatgatggaataacatatgatatttgtagcatg-tttttagtatattttcttgcatttgaaggaaaattataagtcaattagaggaattgtcactagtt 9800627  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatc 238  Q
    |||||||| ||||||||| |||| | |||| || ||||||||||||||||||    
T  9800628 tgaggaacgttttgtatttttttcactcgagtcgttgtaatttacttttatc 9800679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 17881635 - 17881518
Alignment:
Q  133 attatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttact 232  Q
    |||||||||||||||||| |||||  |||||  ||  ||||||| |||||| ||| |||||||||||||||| |||| | |||| ||||||||||||| |    
T  17881635 attatttgcatttgaaggcaaattagaagtcatttaaaggagttgtcaatgattttaggaactttttgtattattttcattcgaatcattgtaatttaat 17881536  T
Q  233 tttatcctaaatcatgca 250  Q
    |||||| |||||||||||    
T  17881535 tttatcataaatcatgca 17881518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 7361816 - 7361652
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    |||||||| ||  ||||||||| ||| || || | ||| |||||||||| ||||||||| |||| ||||| ||| |||||| |||||||| ||| |||||    
T  7361816 tgatgatgaaaatacatatgatctttctaactatgtttctagtgtaattctttgcattttaaggcaaattaaaaatctattagaggagttgtcattggtt 7361717  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatc-ctaaatcatgca 250  Q
     || |||||||||||| | |||| | |||| ||||||||| | ||||||||| ||||||||||||    
T  7361716 cgatgaactttttgtaatgttttcattcgagtcattgtaactcacttttatcactaaatcatgca 7361652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 8606001 - 8606112
Alignment:
Q  86 ttgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggt 185  Q
    ||||||||||||||||||||||| |||| |||| | ||||||||    |||||||| ||| ||||||||||  || || ||| |||||||||||||||||    
T  8606001 ttgatgatggaataacatatgatgtttt-agctatgtttttagttattttatttgcgtttaaaggaaaattagaaatcaattagaggagttttcaatggt 8606099  T
Q  186 ttgaggaactttt 198  Q
    |||||||||||||    
T  8606100 ttgaggaactttt 8606112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 1074466 - 1074541
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaat 244  Q
    |||||||| |||||||||||||||||   ||||||| |||| | ||||||||||||||||| ||||||||||||||    
T  1074466 gaggagttgtcaatggtttgaggaaccaattgtattattttcattcgattcattgtaatttgcttttatcctaaat 1074541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 21543129 - 21543071
Alignment:
Q  92 atggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaagg 150  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||||    
T  21543129 atggaataacatatgatgtttttagctatgtttttagtgtaattattttcatttgaagg 21543071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 7372710 - 7372585
Alignment:
Q  122 tttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcat 221  Q
    |||||||||||||| |||||||||||||| |||||  ||    ||| |||||||| ||| |||||||| |||||||||||||| |||| | |||| || |    
T  7372710 tttttagtgtaattctttgcatttgaaggtaaattagaa----attagaggagttgtcattggtttgatgaactttttgtattgttttcattcgagtcgt 7372615  T
Q  222 tgtaatttacttttatc-ctaaatcatgca 250  Q
    ||||||| | ||||||| | ||||||||||    
T  7372614 tgtaattcaattttatcacgaaatcatgca 7372585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 1255314 - 1255233
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||    ||||||| |||| | |||| ||||||||||| | |||||||||||||||||||    
T  1255314 gaggagttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgca 1255233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 21545896 - 21545819
Alignment:
Q  173 agttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||| ||||||||||||||||| | ||||||| |||| | |||| || |||||| | |||||||||||||||||||||    
T  21545896 agttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaactcacttttatcctaaatcatgca 21545819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 18496583 - 18496659
Alignment:
Q  173 agttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgc 249  Q
    |||| ||||| |||||||||||| |||| ||| |||| | |||| ||||||||||| | ||||||||||||||||||    
T  18496583 agttgtcaattgtttgaggaactatttgaattgttttcattcgaatcattgtaattcatttttatcctaaatcatgc 18496659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 22067906 - 22067826
Alignment:
Q  170 aggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| ||||||||||||||||| |  |||||| |||| | |||| ||||||||||| | |||||||||| ||||||||    
T  22067906 aggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattcaattttatcctagatcatgca 22067826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 24597135 - 24597023
Alignment:
Q  138 ttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttat 237  Q
    |||||||||||||||||||  ||||| ||| || ||||| |||||||||||| | | |||||| ||| |||| |   || || |||||||| | ||||||    
T  24597135 ttgcatttgaaggaaaattagaagtcaattagaagagttgtcaatggtttgatggagtttttgcattgttttgatctgagtcgttgtaattcaattttat 24597036  T
Q  238 cctaaatcatgca 250  Q
    |||||||||||||    
T  24597035 cctaaatcatgca 24597023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 4978004 - 4977840
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatt--tgcatttgaaggaaaattgaaagtctatttgaggagttttcaatgg 184  Q
    |||||| |||||| || ||||||||||||||| | |||| ||| || || ||  ||||||| |||| |||||  ||||| |||  ||||||| ||| |||    
T  4978004 tgatgacggaataccacatgatatttttagctatgtttt-agtatattttttcttgcatttaaaggtaaattataagtcaattaaaggagttgtcattgg 4977906  T
Q  185 tttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||| ||| |||||||||| || | | || | || |||||||| ||||||||||||||| |||||    
T  4977905 tttgaagaattttttgtatttttatcattcaagtcgttgtaattcacttttatcctaaattatgca 4977840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 29544533 - 29544608
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaat 244  Q
    |||||||| ||||| ||||||||||| | ||||||| |||| | |||| || |||||||| |||||| ||||||||    
T  29544533 gaggagttgtcaatagtttgaggaacatattgtattgttttcactcgagtcgttgtaattcacttttctcctaaat 29544608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 12033 - 12156
Alignment:
Q  86 ttgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggt 185  Q
    ||||| ||||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||||| |||||  ||||||||| ||||| || ||||| ||    
T  12033 ttgataatggattaacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagt 12132  T
Q  186 ttgaggaactttttgtattctttt 209  Q
    ||||||||||||||||||| ||||    
T  12133 ttgaggaactttttgtattgtttt 12156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 238
Target Start/End: Complemental strand, 29647728 - 29647577
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    |||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||| |||||  ||||| ||| ||| |||| ||| || ||    
T  29647728 tgatgatggaataacatatgatgtttttagctatgttgttagtgtaattatttgcatttgaaggcaaattagaagtcaattagagtagttgtcattgatt 29647629  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatc 238  Q
    ||||||||||||| |||| |||| | | || || |||||||| |||||||||    
T  29647628 tgaggaactttttatattgttttcatttgagtcgttgtaattcacttttatc 29647577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 27918165 - 27918003
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    |||||||||||||||||||||||||||||||| |  ||||| ||||||| |||||||||||||| |||||  || || | |  ||||||| ||| |||||    
T  27918165 tgatgatggaataacatatgatatttttagctat-gttttaatgtaattctttgcatttgaaggcaaattagaattcaactataggagttgtcattggtt 27918067  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||  ||||| |||| | | || || |||||||| |||||||| ||||||||||||    
T  27918066 tgaggaacgttgggtattgttttcatttgagtcgttgtaattcacttttatactaaatcatgca 27918003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 19540969 - 19541132
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaatt-gaaagtctatttgaggagttttcaatggt 185  Q
    ||||||||||| | ||||||| ||||||  || | ||||||||    || |||||||||||||||||||| |||  | ||| | ||||||| | ||||||    
T  19540969 tgatgatggaacatcatatgagatttttgcctatgtttttagttattttctttgcatttgaaggaaaattagaatttatatat-aggagttgttaatggt 19541067  T
Q  186 ttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||||||||||  ||| |||||| ||||||||||| | |||||||||||||||||||    
T  19541068 ttgaggaactttttgtatttatttcaatcgagtcattgtaattcagttttatcctaaatcatgca 19541132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 17415322 - 17415215
Alignment:
Q  143 tttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaa 242  Q
    ||||||||||||||  |||||  || |||||||| ||||||| |||||||| |||||||||| |||| | |||||| ||||||||||| ||||||| |||    
T  17415322 tttgaaggaaaattagaagtcatttagaggagttgtcaatgggttgaggaaatttttgtattgttttcattcgattgattgtaatttagttttatcgtaa 17415223  T
Q  243 atcatgca 250  Q
    || |||||    
T  17415222 ataatgca 17415215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 21843103 - 21843022
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||||  ||||||||| |||||| | ||||||| |||| | |||| |||||||||||||||||||||||||||||||||    
T  21843103 gaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgca 21843022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 24047326 - 24047477
Alignment:
Q  99 aacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctattt-gaggagttttcaatggtttgaggaacttt 197  Q
    |||||||||||||||  ||| | ||||||||    ||||||||||||||||||||||   | || ||||| ||| | || |||||||||| |||||| ||    
T  24047326 aacatatgatattttaggctatgtttttagttattttatttgcatttgaaggaaaataagaggt-tatttagagaaattgtcaatggtttaaggaacatt 24047424  T
Q  198 ttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| |||| | |||| ||||||||||| ||||||||||||||| |||||    
T  24047425 ttgtattgttttcattcgagtcattgtaattcacttttatcctaaattatgca 24047477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 22510914 - 22511035
Alignment:
Q  122 tttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcat 221  Q
    |||||||||||||| |||||||||||||| |||||  ||||  ||| |||||| || || |||||| |||||| ||||||||| |||| | |||| ||      
T  22510914 tttttagtgtaattttttgcatttgaaggcaaattataagtaaattagaggagcttccattggttttaggaac-ttttgtatttttttcattcgagtcgc 22511012  T
Q  222 tgtaatttacttttatcctaaat 244  Q
    |||||||||| ||||||||||||    
T  22511013 tgtaatttacgtttatcctaaat 22511035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 21844730 - 21844649
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| |||||||||| |||||| | || |||| |||| | |||| ||||||||||||||| |||||||||||||||||    
T  21844730 gaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatttactcttatcctaaatcatgca 21844649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 22388924 - 22388773
Alignment:
Q  98 taacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaacttt 197  Q
    ||||||||||| ||||||||| | |||||||     || |||||||||||||| |||||  ||||| ||| |||||||| |||||  |||||||||||||    
T  22388924 taacatatgatgtttttagctatgtttttagatattttctttgcatttgaaggcaaattagaagtcaattagaggagttgtcaataatttgaggaacttt 22388825  T
Q  198 ttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    || |||| |||| | | || ||||||||||  | ||||||||| |||||||||    
T  22388824 tt-tattgttttcatttgagtcattgtaatccagttttatcctgaatcatgca 22388773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 17152167 - 17152248
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||  ||||||||| |||| | |||| || |||||||| ||||||||| ||| |||||||    
T  17152167 gaggagttgtcaatggtttgaggaatattttgtattattttcattcgagtcgttgtaattaacttttatcgtaattcatgca 17152248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 21505236 - 21505159
Alignment:
Q  173 agttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||| ||||||||||||||| | | ||||||| |||| | |||| || || |||||||||||||||||||||||||||    
T  21505236 agttgtcaatggtttgaggagcatattgtattgttttcactcgagtctttataatttacttttatcctaaatcatgca 21505159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 35031716 - 35031797
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| | ||||||||||||||| | ||||||| |||| | |||| || |||||| |||||||||||||| ||||||||    
T  35031716 gaggagttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgca 35031797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 34063937 - 34063865
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||||||| ||||||||||||||| |||| | |||| |  |||||||| ||| |||||||||||||||||    
T  34063937 tcaatggtttgtggaactttttgtattgttttcattcgagttgttgtaattcactattatcctaaatcatgca 34063865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 21849174 - 21849093
Alignment:
Q  169 gaggagttt-tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||   | || ||||||||||| | ||||||| |||||||||||    
T  21849174 gaggagtttgtcaatggtttgaggaacattttgtattgttttcttt-gagtcattgtaattcagttttatcataaatcatgca 21849093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 24187993 - 24188055
Alignment:
Q  182 tggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaat 244  Q
    |||||| |||||||||||||||| | || | |||| ||||||| ||| |||||||||||||||    
T  24187993 tggtttaaggaactttttgtattgtattcattcgagtcattgtgattcacttttatcctaaat 24188055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 32276646 - 32276536
Alignment:
Q  137 tttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttactttta 236  Q
    |||||||||||||||||||   | |||  ||  ||||| | |||||||||||| |||| ||||| ||| |||||| |||| ||||||||||| |  ||||    
T  32276646 tttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaattgaagttta 32276547  T
Q  237 tcctaaatcat 247  Q
    | |||||||||    
T  32276546 ttctaaatcat 32276536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 30705268 - 30705297
Alignment:
Q  221 ttgtaatttacttttatcctaaatcatgca 250  Q
    ||||||||||||||||||||||||||||||    
T  30705268 ttgtaatttacttttatcctaaatcatgca 30705297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 39730474 - 39730542
Alignment:
Q  182 tggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||| |||||| |||| |||  |||||| || | || |||||||| |||||||||||||||||||||    
T  39730474 tggtttaaggaacattttctatagtttttattcaagtcgttgtaattcacttttatcctaaatcatgca 39730542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 250
Target Start/End: Complemental strand, 23157975 - 23157808
Alignment:
Q  86 ttgatgatggaataacatatgatatttttagct---ttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaat 182  Q
    ||||||||||||||||||||||| ||||| |||   || ||||||||    || ||||||||||||||||||||  ||||| ||| |||||||| |||||    
T  23157975 ttgatgatggaataacatatgatgttttttgctatgttttttttagttattttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaat 23157876  T
Q  183 ggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||||||| ||||| |||| | | || || |||||||| ||||||||| |||||||||||    
T  23157875 ggtttgaggaacttttggtattgttttcatttgagtcgttgtaattcacttttatcataaatcatgca 23157808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 20694572 - 20694729
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctattt-gaggagttttcaatggt 185  Q
    |||| |||||| | ||||||||| ||| |||| | ||||||||    |||||||||||| |||||||||| ||||  ||||| ||||| || ||||||||    
T  20694572 tgataatggaacatcatatgatactttaagctatgtttttagttattttatttgcatttaaaggaaaattaaaaga-tatttagaggatttgtcaatggt 20694670  T
Q  186 ttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaat 244  Q
    ||||||||||||||||||| |||| | |||| ||||||||||| | |||||||| ||||    
T  20694671 ttgaggaactttttgtattgttttcattcgagtcattgtaattcagttttatcccaaat 20694729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 19331497 - 19331606
Alignment:
Q  141 catttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcct 240  Q
    ||||||||||||||||  || || ||| |||||||| ||||| ||||||| ||||||||||||| | || | |||| || |||||||||| |||||||||    
T  19331497 catttgaaggaaaattagaattcaattagaggagttgtcaattgtttgagaaactttttgtattgtgttcattcgagtcgttgtaatttagttttatcct 19331596  T
Q  241 aaatcatgca 250  Q
    ||||||||||    
T  19331597 aaatcatgca 19331606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 18222510 - 18222588
Alignment:
Q  172 gagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||| ||||||||||||| ||| | ||||||| |||| | |||| ||||||||||| |||||||||||||||||||||    
T  18222510 gagttgtcaatggtttgagaaacatattgtattgttttaactcgagtcattgtaattcacttttatcctaaatcatgca 18222588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 20083448 - 20083560
Alignment:
Q  137 tttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttactttta 236  Q
    |||||||||||||| ||||| ||| | |||| |||||||| ||||| ||||||||||| |||| |||| |||||| |||| |  |||||||| | || ||    
T  20083448 tttgcatttgaaggcaaattaaaaat-tattagaggagttgtcaatagtttgaggaacattttttattgtttttattcgagtatttgtaattcagttcta 20083546  T
Q  237 tcctaaatcatgca 250  Q
    ||||||||||||||    
T  20083547 tcctaaatcatgca 20083560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 22644047 - 22643924
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    ||||||| ||||||||||| |||||||||| | ||||||||||    || |||| |||||||||||||||  |||||  || |||||||| |||||||||    
T  22644047 tgatgattgaataacatataatatttttaggtatatttttagttattttctttgtatttgaaggaaaattagaagtcatttagaggagttgtcaatggtt 22643948  T
Q  187 tgaggaactttttgtattcttttt 210  Q
    |||  |||||| ||| || |||||    
T  22643947 tgattaactttgtgtttttttttt 22643924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 24841767 - 24841846
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatg 248  Q
    |||||||||||||||||||||||||| | ||||||| |||| | |||| || |||||| | |||||||||||| ||||||    
T  24841767 gaggagttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcacttttatcctagatcatg 24841846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 17382136 - 17382055
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||||||| |||| | || | || ||||| || |||||||||||||||||||||    
T  17382136 gaggagttgtcaatggtttgaggaacatattgtattgttttcactcaaatcgttgtatttcacttttatcctaaatcatgca 17382055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 7742967 - 7742891
Alignment:
Q  172 gagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatg 248  Q
    ||||| |||||||||||| |||| ||||||||| ||||   |||| || |||||||| |||||||||||||||||||    
T  7742967 gagttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattcacttttatcctaaatcatg 7742891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 25680616 - 25680691
Alignment:
Q  175 ttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||||||||||| | ||||||| |||| | |||| || |||||||| | |||||| ||||||||||||    
T  25680616 ttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcaattttattctaaatcatgca 25680691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 16634063 - 16634141
Alignment:
Q  172 gagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||| ||||||||||||| ||| | ||||||| |||| | |||| || |||||||| |||||||| ||||||||||||    
T  16634063 gagttgtcaatggtttgagaaacatattgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgca 16634141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 25367555 - 25367621
Alignment:
Q  90 tgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaatt 156  Q
    ||||||||||||||||||  |||||| || | |||||||| || || ||||||||||||||||||||    
T  25367555 tgatggaataacatatgacgtttttaactatgtttttagtatatttctttgcatttgaaggaaaatt 25367621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 24268581 - 24268650
Alignment:
Q  181 atggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||||| | ||||||| |||| | |||| ||||| ||||| |||||||||||| ||||||||    
T  24268581 atggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgca 24268650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 24345210 - 24345279
Alignment:
Q  181 atggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||||| | ||||||| |||| | |||| ||||| ||||| |||||||||||| ||||||||    
T  24345210 atggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgca 24345279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 24411030 - 24410949
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||  ||||||||| |||| | | || || |||||||| | |||||||||||||| ||||    
T  24411030 gaggagttgtcaatggtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttttatcctaaatcgtgca 24410949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 24517368 - 24517447
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatg 248  Q
    |||||||| ||||||||||||||||| | ||||||| |||| |  ||| || |||||||| || |||||||| |||||||    
T  24517368 gaggagttgtcaatggtttgaggaacatattgtattgttttcacccgagtcgttgtaattcacatttatccttaatcatg 24517447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 15205658 - 15205738
Alignment:
Q  170 aggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| ||| ||||||||||||| | ||||||| |||| | |||| || |||||||| | |||| ||||| ||||||||    
T  15205658 aggagttgtcagtggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgca 15205738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 16622767 - 16622687
Alignment:
Q  170 aggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| ||||||||||||||||| | ||||||| | || | || |||  |||||||  |||||||||||| ||||||||    
T  16622767 aggagttgtcaatggtttgaggaacatgttgtattgtattcactctatttgttgtaatacacttttatcctagatcatgca 16622687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 1604 - 1720
Alignment:
Q  93 tggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgagga 192  Q
    |||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||||| |||||  ||||||||| ||||| || ||||| |||||||||    
T  1604 tggattaacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgagga 1703  T
Q  193 actttttgtattctttt 209  Q
    |||||||||||| ||||    
T  1704 actttttgtattgtttt 1720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 24507761 - 24507645
Alignment:
Q  93 tggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgagga 192  Q
    |||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||||| |||||  ||||||||| ||||| || ||||| |||||||||    
T  24507761 tggattaacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgagga 24507662  T
Q  193 actttttgtattctttt 209  Q
    |||||||||||| ||||    
T  24507661 actttttgtattgtttt 24507645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 17860540 - 17860468
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||||||||||||| ||||||||| |||| | |||| ||||||| ||||||||||||| |||||||||||    
T  17860540 tcaatggtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgca 17860468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 26512878 - 26512797
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||| | ||| ||||||||| |||| | ||||||| |||||||| ||||||| |||| ||||||||    
T  26512878 gaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcacttttaacctagatcatgca 26512797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 26517994 - 26517913
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||| | ||| ||||||||| |||| | ||||||| |||||||| ||||||| |||| ||||||||    
T  26517994 gaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcacttttaacctagatcatgca 26517913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 13759552 - 13759471
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||| ||| |||| | |||| || |||||||| | |||||| ||| ||||||||    
T  13759552 gaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaatcgttgtaattcaattttattctatatcatgca 13759471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 14768369 - 14768288
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||| |||||||||||| ||||||||||  ||| | |||| | ||||||||| || ||||| ||||| ||||||    
T  14768369 gaggagttgtcattggtttgaggaattttttgtattggtttcattcgagttattgtaattcacatttattctaaaacatgca 14768288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 28422384 - 28422547
Alignment:
Q  86 ttgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggt 185  Q
    |||||||| ||||||||||| || |||||  || |  ||||||||||||| ||||||||||||||||||||  ||||| ||| |||||||| ||  | ||    
T  28422384 ttgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgt 28422483  T
Q  186 ttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| |||||||||| |||| | |||| ||||||||||| |||||||| ||||||||||||    
T  28422484 ttgaggaattttttgtattgttttcattcgaatcattgtaattcacttttat-ctaaatcatgca 28422547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 21829315 - 21829155
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    ||||||||| ||| ||||||||||||||  || |||||||| |    ||||||||||||||||||||||   | |||  || |||||||| |||||||||    
T  21829315 tgatgatgggatatcatatgatatttttgactatatttttatttattttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtt 21829216  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcat 247  Q
    |||||||| ||||||||| |||| | | || || |||||||| | ||||||||||||||||    
T  21829215 tgaggaacattttgtattattttcatttgagtcgttgtaattcagttttatcctaaatcat 21829155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 11474828 - 11474941
Alignment:
Q  137 tttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttactttta 236  Q
    |||||| || ||||||||||| |||||  ||  |||| |  ||||||||||||||||||||||||||| |||| | |||| || |||||||| | |||||    
T  11474828 tttgcacttaaaggaaaattggaagtcgtttaaaggactagtcaatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaatttta 11474927  T
Q  237 tcctaaatcatgca 250  Q
    ||||||||||||||    
T  11474928 tcctaaatcatgca 11474941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 33577757 - 33577829
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||| |||| ||||||||| |||||| | |||||||||||||| | || ||||||||||||||||    
T  33577757 tcaatggtttgaagaacgttttgtattgtttttatttgattcattgtaattcatttatatcctaaatcatgca 33577829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 19546075 - 19546005
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatg 248  Q
    ||||||||||||||||||| ||||||| |||||| | || ||||||||||| ||| |||||||| ||||||    
T  19546075 tcaatggtttgaggaacttattgtattgtttttatttgagtcattgtaattcactattatcctatatcatg 19546005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 8402651 - 8402570
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| |||||||||||||||||  |||||||| |||| | |||| || |||||||| | ||||||| |||||||||||    
T  8402651 gaggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaattcatttttatcttaaatcatgca 8402570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 26297763 - 26297844
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| | ||||||||||| |||||||| |||| |||| | |||| || |||||||| | |||||||||||||||||||    
T  26297763 gaggagttgttaatggtttgagaaactttttatattgttttcattcgagtcgttgtaattcaattttatcctaaatcatgca 26297844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 26387977 - 26387864
Alignment:
Q  137 tttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttactttta 236  Q
    |||||||||||||| |||||  ||||  ||| ||| |||| ||||||||||||| ||| |||||||||||||| | | |  || | |||||| | |||||    
T  26387977 tttgcatttgaaggcaaattagaagtaaattagagtagttgtcaatggtttgagaaacgttttgtattcttttcatttgtgtcgtagtaattaagtttta 26387878  T
Q  237 tcctaaatcatgca 250  Q
    ||||||||||||||    
T  26387877 tcctaaatcatgca 26387864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 18474175 - 18474265
Alignment:
Q  159 aagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||| ||| ||||| || ||||| ||||||||||||  ||||||| |||  | |||||||||||||||| ||| |||||||||||||||||    
T  18474175 aagtcaattagaggatttatcaatcgtttgaggaactgattgtattgtttc-attcgattcattgtaattcactgttatcctaaatcatgca 18474265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 13911282 - 13911360
Alignment:
Q  172 gagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||| ||||||||||||||||| | | ||||| |||| | | || ||||||||||| |||||||||||| ||||||||    
T  13911282 gagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgca 13911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 1475381 - 1475300
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||||||||||||||||  | ||||||| |||| | |||| || |||||||| | || ||||||| ||||||||    
T  1475381 gaggagttttcaatggtttgaggaatatattgtattattttcactcgagtcgttgtaattcaattatatcctagatcatgca 1475300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 30493349 - 30493284
Alignment:
Q  185 tttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||| ||||||||||||| |||| | |||| || ||||| |||| |||||||||||||||||||    
T  30493349 tttgagaaactttttgtattgttttcattcgagtcgttgtagtttagttttatcctaaatcatgca 30493284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 27374543 - 27374471
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||| ||||| |||||||||| |||| | |||| ||||| ||||  | |||||||||||||||||||    
T  27374543 tcaatggtttaaggaagtttttgtattgttttcattcgagtcattataatccagttttatcctaaatcatgca 27374471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 5632673 - 5632628
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgta 132  Q
    |||||||| ||||||||||||| |||||| |||| |||||||||||    
T  5632673 tgatgatgaaataacatatgatgtttttaactttgtttttagtgta 5632628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 11521154 - 11521234
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||||||| |||||| | ||||   ||||||| | |||||||||| ||||||||    
T  11521154 gaggagttgtcaatggtttgaggaacatattgtattatttttacttgatt-tgtgtaattcagttttatcctagatcatgca 11521234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 33914662 - 33914583
Alignment:
Q  170 aggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| |||| |||||||||||| | ||||||| |||||| |||| || |||||||| ||  |||||| ||||||||||    
T  33914662 aggagttgtcaacggtttgaggaacatattgtattgtttttactcgagtcgttgtaattcac-gttatcccaaatcatgca 33914583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 19601765 - 19601893
Alignment:
Q  122 tttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcat 221  Q
    |||||||||||||| ||||||||| |||| ||||| |||||| ||| |||||||| ||| |||||||||||||||||| |||| |||| | || | |  |    
T  19601765 tttttagtgtaattctttgcatttaaaggcaaattaaaagtcaattagaggagttgtcattggtttgaggaactttttctatttttttcattcaaattgt 19601864  T
Q  222 tgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| |||||||||||||||||||||    
T  19601865 tgtaattcacttttatcctaaatcatgca 19601893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 21077215 - 21077325
Alignment:
Q  137 tttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttactttta 236  Q
    |||||||||||||| |||||  |||||  || |||||||| ||||||||||||| ||| ||||||||| |||||| |||| || ||||| || | |||||    
T  21077215 tttgcatttgaaggcaaattagaagtcatttagaggagttgtcaatggtttgagaaaccttttgtattatttttattcgagtcgttgtagttcaatttta 21077314  T
Q  237 tcctaaatcat 247  Q
    ||  |||||||    
T  21077315 tcacaaatcat 21077325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 22119578 - 22119741
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttg-aggagttttcaatggt 185  Q
    ||||||| ||| | |||||||||||||  ||| | ||||||||    || |||||||||||||| |||||  |||| |||||  ||||||| ||||||||    
T  22119578 tgatgatagaacatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaattagaagt-tatttataggagttgtcaatggt 22119676  T
Q  186 ttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||   ||||| | ||||   |||| ||||||||||||||||||| || ||||||||||    
T  22119677 ttgaggaacaaattgtaatgttttcgttcgagtcattgtaatttacttttacccaaaatcatgca 22119741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 21167711 - 21167817
Alignment:
Q  137 tttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttactttta 236  Q
    |||||||||||||||||||   | |||  || |||||||| || ||| ||| |||||| ||||||||| |||| | |||| |  ||||||||||||||||    
T  21167711 tttgcatttgaaggaaaataagacgtcatttagaggagttgtccatgttttaaggaacattttgtattgttttcattcgagttgttgtaatttactttta 21167810  T
Q  237 tcctaaa 243  Q
    |||||||    
T  21167811 tcctaaa 21167817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 27302796 - 27302873
Alignment:
Q  173 agttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||| ||||||||||||||||| ||||||||| |||| | |||| ||||||||||| | || ||| ||| ||||||||    
T  27302796 agttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattcaattatatactagatcatgca 27302873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 9288224 - 9288303
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatg 248  Q
    ||||||||||||||||||||||||||   ||||||| |||| | | || ||||| ||||| | ||||||| |||||||||    
T  9288224 gaggagttttcaatggtttgaggaacaaattgtattgttttcatttgagtcattataattcatttttatcataaatcatg 9288303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 10576479 - 10576542
Alignment:
Q  181 atggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaat 244  Q
    ||||||||| |||| ||||||||| |||| | |||| ||||||||||| |||||||| ||||||    
T  10576479 atggtttgaagaacattttgtattgttttcattcgagtcattgtaattcacttttattctaaat 10576542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 1676396 - 1676315
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||||| | |||| | |||| |  |||||||| | |||||||||| ||||||||    
T  1676396 gaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaattcaattttatcctatatcatgca 1676315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 1682924 - 1682843
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||||| | |||| | |||| |  |||||||| | |||||||||| ||||||||    
T  1682924 gaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaattcaattttatcctatatcatgca 1682843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 9783084 - 9783003
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||| ||||||||||| | ||||||| |||| | || ||||||||||||| | ||||||  || ||||||||    
T  9783084 gaggagttgtcaatagtttgaggaacatattgtattgttttcactcaattcattgtaattcagttttattttagatcatgca 9783003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 12111433 - 12111360
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattcttttt-aatcgattcattgtaatttacttttatccta 241  Q
    |||||||| ||||||||||||||||| | ||||||| ||||| |  ||| || |||||||| ||||||||||||    
T  12111433 gaggagttgtcaatggtttgaggaacatattgtattttttttcacacgagtcgttgtaattcacttttatccta 12111360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 17339914 - 17339833
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| || |||| ||||||||| ||||||||  |||| | || | || |||||||| | |||||||||||||||||||    
T  17339914 gaggagttatccatggattgaggaacattttgtatctttttcattctagtctttgtaattcaattttatcctaaatcatgca 17339833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 24584872 - 24584744
Alignment:
Q  122 tttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcat 221  Q
    |||||||| ||||| |||| ||||||||| |||||  ||||| ||| |||||||| |||  ||||||||||| |||||||||| |||| | |||| ||||    
T  24584872 tttttagtataattctttgtatttgaaggcaaattagaagtcaattagaggagttgtcatcggtttgaggaattttttgtattgttttcattcgagtcat 24584773  T
Q  222 tgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| | ||||||| |||||||||||    
T  24584772 tgtaattcatttttatcataaatcatgca 24584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 30543695 - 30543856
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    ||||||||||| ||| |||||||||||||||| | |||||||| |  || |||||||||||||  ||||| |||||  ||| |||||||| ||||| |||    
T  30543695 tgatgatggaaaaacttatgatatttttagctatgtttttagtatttttttttgcatttgaagacaaattaaaagttaattagaggagttctcaat-gtt 30543793  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||| |||| ||||||||| |||| | | || |  |||||||| |||||||||||||||||||||    
T  30543794 tgatgaac-ttttgtattgttttcatttgagttgttgtaattcacttttatcctaaatcatgca 30543856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 14977208 - 14977126
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaa-tcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||||||| ||||| | |||| ||||||||||| |||||||||||||||||||||    
T  14977208 gaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcattgtaattcacttttatcctaaatcatgca 14977126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 35135522 - 35135442
Alignment:
Q  170 aggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| |||| ||||| ||| || ||||||||| |||||| |||| ||||||||||| | |||||||||||||||||||    
T  35135522 aggagttgtcaaaggttttaggtacattttgtattgtttttactcgagtcattgtaattcatttttatcctaaatcatgca 35135442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 12956503 - 12956582
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatg 248  Q
    |||||||| ||||||||||||||||  | ||||||| |||| | |||| |||| |||||| |||||||||||||||||||    
T  12956503 gaggagttgtcaatggtttgaggaaaatattgtattgttttcactcgagtcatcgtaattcacttttatcctaaatcatg 12956582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 12774935 - 12774863
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||| | || |||| |||| |||||| | || ||||||||||||| |||||||||||||||||||    
T  12774935 tcaatggtttgacgtacattttatattatttttatttgagtcattgtaatttagttttatcctaaatcatgca 12774863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 14424904 - 14424832
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||||||||||||| |||  |||| | |||| || |||||||| | |||||||||||||||||||    
T  14424904 tcaatggtttgaggaactttttatatggttttcattcgagtcgttgtaattcagttttatcctaaatcatgca 14424832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 13583637 - 13583532
Alignment:
Q  142 atttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatccta 241  Q
    |||| |||| |||||  ||||| ||| |||||||| | ||| || |||||||| |||| |||| |||||| |||| || |||||||| | ||||||||||    
T  13583637 attttaaggtaaattagaagtcaattagaggagttgttaatagtctgaggaaccttttctattgtttttattcgagtctttgtaattcagttttatccta 13583538  T
Q  242 aatcat 247  Q
    ||||||    
T  13583537 aatcat 13583532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 32239301 - 32239382
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||| ||| | ||||||| |||||| | || || ||| |||| ||||||||| |||||||||||    
T  32239301 gaggagttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatcttaaatcatgca 32239382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 11437350 - 11437465
Alignment:
Q  86 ttgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggt 185  Q
    |||||| ||||||||||| |||| |||||| || |  |||||||    || |||| |||| |||| |||||| ||||| ||| |||||||||||||||||    
T  11437350 ttgatgttggaataacatttgatgtttttacctatgcttttagttattttctttgtatttaaaggcaaattggaagtcaattagaggagttttcaatggt 11437449  T
Q  186 ttgaggaactttttgt 201  Q
    | || ||| |||||||    
T  11437450 tcgaagaaatttttgt 11437465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 30851282 - 30851119
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    |||||||||||   |||||||||||||| ||| | ||||||||    || |||  |||||||||||||||  |||||  ||  | ||||| |  ||||||    
T  30851282 tgatgatggaacgtcatatgatatttttggctatgtttttagttattttctttatatttgaaggaaaattagaagtcatttataagagttgttgatggtt 30851183  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| ||||| |||| |||| | |||| || |||||||| |  ||||||||||||||||||    
T  30851182 tgaggaagtttttatattattttcattcgaatcgttgtaattcagatttatcctaaatcatgca 30851119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 28901441 - 28901360
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||||||| |||| | |||| || ||||||||   |||||||||| || |||||    
T  28901441 gaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcgtttttatcctagataatgca 28901360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 29291785 - 29291865
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| |||||||||||||||| ||||| |||| |||| | | || || |||||||  | |||||||||||||||||||    
T  29291785 gaggagttatcaatggtttgaggaattttttatatt-ttttcatttgagtcgttgtaatgcagttttatcctaaatcatgca 29291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 5570241 - 5570161
Alignment:
Q  170 aggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| |||||  |||||||||| | ||||||| |||| | |||| |  |||||||| |||||||||||| ||||||||    
T  5570241 aggagttgtcaatactttgaggaacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgca 5570161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 28902103 - 28902175
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatccta 241  Q
    |||||||| | ||||||||||| ||| | ||||||| |||| | |||| || |||||||| ||||||||||||    
T  28902103 gaggagttattaatggtttgagaaacatattgtattgttttcattcgagtcgttgtaattcacttttatccta 28902175  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 23223425 - 23223507
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaa-tcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| |||||||||||||||||   ||||||| ||||| | ||||||| ||||||||||||||||||||||||||||||    
T  23223425 gaggagttgtcaatggtttgaggaacacattgtattttttttcactcgattcgttgtaatttacttttatcctaaatcatgca 23223507  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 25126462 - 25126573
Alignment:
Q  137 tttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttactttta 236  Q
    |||||||||||||| ||| |  |||||  || |||||||| ||||||||||||| || |||||||||| |||||| | || || | |||||| | |||||    
T  25126462 tttgcatttgaaggcaaaatagaagtcatttggaggagttgtcaatggtttgagaaattttttgtattgtttttatttgagtcgtggtaattcagtttta 25126561  T
Q  237 tcctaaatcatg 248  Q
    ||||||||||||    
T  25126562 tcctaaatcatg 25126573  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 52271426 - 52271363
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaagg 150  Q
    |||||||||||||||||||||| |||||| || | |||||||||||||| ||||||||| ||||    
T  52271426 tgatgatggaataacatatgatgtttttaactatgtttttagtgtaattctttgcatttaaagg 52271363  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 18795163 - 18795273
Alignment:
Q  137 tttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttactttta 236  Q
    |||||||||||||||||||   | |||  || ||||| || ||||||||||||||||| ||||||||  |||| | | || | |||||||||||||||||    
T  18795163 tttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtatcgttttcatttgagtaattgtaatttactttta 18795262  T
Q  237 tcctaaatcat 247  Q
    |||||| ||||    
T  18795263 tcctaagtcat 18795273  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 19884190 - 19884267
Alignment:
Q  173 agttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||| ||||||||||||||||| |||| |||| |||| | |||||||  |||||||  ||||||||||||||||||||    
T  19884190 agttatcaatggtttgaggaaccttttatattgttttcattcgattcgatgtaattctcttttatcctaaatcatgca 19884267  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 25494580 - 25494499
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | |||| || ||||   | || || ||||||||||||||||||||||||||||||    
T  25494580 gaggagttgtcaatggtttgaggaacatattgtcttgttttctcttgagtccttgtaatttacttttatcctaaatcatgca 25494499  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 26854485 - 26854340
Alignment:
Q  102 atatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgt 201  Q
    ||||||| ||||||||| ||||||||||    |||||||||||| ||   ||| |  ||||| ||| ||| |||| | |||| |||||||||||||||||    
T  26854485 atatgatgtttttagctatatttttagttattttatttgcatttaaaaacaaaatataagtcaattagagaagttgttaatgttttgaggaactttttgt 26854386  T
Q  202 attctttttaatcgattcattgtaatttacttttatcctaaatcat 247  Q
    |||||||| | || | || |||||||| | ||||||||||| ||||    
T  26854385 attcttttcattcaagtcgttgtaattcaattttatcctaattcat 26854340  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 26102080 - 26102152
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||||||||||| | ||||||||| |||| | |||| |  |||||||| |||||||||||||||||||||    
T  26102080 tcaatggtttgaggaccattttgtattgttttcattcgagttgttgtaattcacttttatcctaaatcatgca 26102152  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 15298967 - 15298889
Alignment:
Q  172 gagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||| |||||||||||||||| |||||||||| | || | | || ||||||||||| | |||||||| ||||||||||    
T  15298967 gagttgtcaatggtttgaggaagtttttgtattgtattcatttgaatcattgtaattaagttttatccaaaatcatgca 15298889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 50047195 - 50047273
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcat 247  Q
    |||||||| |||||| |||||| ||| | ||||||| |||| | |||| |||| |||||| ||||||||||||||||||    
T  50047195 gaggagttgtcaatgatttgagaaacatattgtattgttttcactcgagtcatggtaattcacttttatcctaaatcat 50047273  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 12810336 - 12810417
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||||||| |||| | || | || |||||||| | |||||||||| ||||||||    
T  12810336 gaggagttgtcaatggtttgaggaacatattgtattgttttcattcaagtcgttgtaattcatttttatcctagatcatgca 12810417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 26657490 - 26657567
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatca 246  Q
    |||||||| ||||||||||||||||  |  |||||| |||| | ||||||| |||||||| |||||||||||| ||||    
T  26657490 gaggagttgtcaatggtttgaggaatataatgtattgttttcactcgattcgttgtaattcacttttatcctagatca 26657567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 30675498 - 30675579
Alignment:
Q  169 gaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||| ||||||||||||||||| | ||||||| |||| | |||| || |||||||  |||||| ||||| ||||||||    
T  30675498 gaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgca 30675579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 19257895 - 19257823
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||| ||||||||||||| |||||| |||| | || | |||||||||||   |||||||||||||||||||    
T  19257895 tcaatgatttgaggaactttctgtattgttttcattctagtcattgtaattcgattttatcctaaatcatgca 19257823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 11770086 - 11770016
Alignment:
Q  178 tcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatg 248  Q
    |||||||||| |||||| | ||||||| |||| | |||  || |||||||| |||||||||||||||||||    
T  11770086 tcaatggtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcacttttatcctaaatcatg 11770016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 15417062 - 15416993
Alignment:
Q  181 atggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||| ||| |||| |||| |||| | || ||||||| ||||| ||||||||| |||||||||||    
T  15417062 atggtttgagaaacattttttattgttttcattcaattcattttaattcacttttatcttaaatcatgca 15416993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 18391100 - 18391177
Alignment:
Q  173 agttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||| ||||||||||||| ||| |||| |||| |||| | | || || |||||||| |||||||||||| ||||||||    
T  18391100 agttgtcaatggtttgagtaacattttatattattttcatttgagtcgttgtaattaacttttatcctagatcatgca 18391177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 21551010 - 21550930
Alignment:
Q  139 tgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattc 219  Q
    |||||||||||| ||||   | ||| ||| |||||||| || |||||||||||||| ||||||||| |||| | |||||||    
T  21551010 tgcatttgaaggcaaatcagaggtcaattagaggagttgtctatggtttgaggaacattttgtattgttttcattcgattc 21550930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 250
Target Start/End: Original strand, 58688 - 58840
Alignment:
Q  98 taacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaacttt 197  Q
    ||||||||||| ||||||||| | ||||| ||    || | |||||||||||| |||||  ||||| ||  |||||||| ||||||||||||||||||||    
T  58688 taacatatgatgtttttagctatgtttttggttattttctatgcatttgaaggcaaattagaagtcaatcagaggagttgtcaatggtttgaggaacttt 58787  T
Q  198 ttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||||| |||| | |||  ||||||||||  |  |||||||| |||||||||    
T  58788 ttgtattgttttcattcgggtcattgtaatccaggtttatcctgaatcatgca 58840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 11880 - 11717
Alignment:
Q  87 tgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtt 186  Q
    ||||||| ||| | |||||||||||||  ||| | ||||||||    ||||||||||||||||| ||| |  |||||  || |||||||| |||||| ||    
T  11880 tgatgattgaacatcatatgatattttaggctatgtttttagttattttatttgcatttgaaggcaaaatagaagtcatttagaggagttgtcaatgatt 11781  T
Q  187 tgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||| |||||||||||||  |||| | | || || |||||||| | |||| ||||||||||||||    
T  11780 tgatgaactttttgtatagttttcatttgaatcgttgtaattcagttttgtcctaaatcatgca 11717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 21425 - 21492
Alignment:
Q  183 ggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    |||||||||||||| ||||||| |||| | |||| || |||||||| |||||||||||||||||||||    
T  21425 ggtttgaggaacttattgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgca 21492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 6213 - 6282
Alignment:
Q  172 gagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatccta 241  Q
    ||||||||||||||||||||||| |  |||||| |||| | || | ||||||||||||||||||||||||    
T  6213 gagttttcaatggtttgaggaacataatgtattattttcactcaagtcattgtaatttacttttatccta 6282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 1931 - 1853
Alignment:
Q  172 gagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgca 250  Q
    ||||| |||||| ||| ||||| |||||||||| |||| | || | |||||||||| || ||||||||||||| |||||    
T  1931 gagttgtcaatgatttaaggaaatttttgtattgttttcattctagtcattgtaatctagttttatcctaaattatgca 1853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 1723 - 1839
Alignment:
Q  92 atggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgagg 191  Q
    ||||||||||||||||| ||||   || | |||||||  ||||| |||||||||||||||| |||  ||||| |||  |||| || ||| |||||||| |    
T  1723 atggaataacatatgatgttttgc-ctatgtttttagcctaattctttgcatttgaaggaatattagaagtcaattataggatttgtcattggtttgaag 1821  T
Q  192 aactttttgtattctttt 209  Q
    ||| ||||||||| ||||    
T  1822 aaccttttgtattgtttt 1839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 27007 - 26978
Alignment:
Q  218 tcattgtaatttacttttatcctaaatcat 247  Q
    ||||||||||||||||||||||||||||||    
T  27007 tcattgtaatttacttttatcctaaatcat 26978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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