View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_226 (Length: 250)
Name: NF6876A_low_226
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_226 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 17759278 - 17759512
Alignment:
| Q |
19 |
catcatattagaaaatgttcattcttttatatttaggttt---ggcatagtaaattgacaataattggttggcaggcttgctggggccgtaatccctcag |
115 |
Q |
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| T |
17759278 |
catcatattagaaaatgttcattcttttatatttaggtttcatggcatagtaaattgacaataattggttggcaggcttgttggggccgtaatccctcag |
17759377 |
T |
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| Q |
116 |
gtgggagaaatacaagcagcaaagtggccaagcaagctgcattgggatttgttaaacgaacattggagcggtaccatcaatttgaagatactggcaagag |
215 |
Q |
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| T |
17759378 |
gtgggagaaatacaagcagcaaagtggccaagcaagctgcattgggatttgttaaacgaacattggagcggtaccatcaatttgaagatactggcaagag |
17759477 |
T |
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| Q |
216 |
ctgctccaaagagcctttattcaaggatatgttct |
250 |
Q |
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| T |
17759478 |
ctgcttcaacgagcctttattcaaggatatgttct |
17759512 |
T |
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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 249
Target Start/End: Complemental strand, 52229732 - 52229616
Alignment:
| Q |
133 |
agcaaagtggccaagcaagctgcattgggatttgttaaacgaacattggagcggtaccatcaatttgaagatactggcaagagctgctccaaagagcctt |
232 |
Q |
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|||||| ||| ||||||||||||| ||| |||||||||| | || |||||||| ||||| |||||||||||||| ||||||||||| | || ||||||| |
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| T |
52229732 |
agcaaaatggtcaagcaagctgcaatggcatttgttaaatggacgttggagcgataccaccaatttgaagatacaggcaagagctgtttcagcgagcctt |
52229633 |
T |
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| Q |
233 |
tattcaaggatatgttc |
249 |
Q |
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| T |
52229632 |
tattcaaggatttgttc |
52229616 |
T |
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