View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_227 (Length: 250)

Name: NF6876A_low_227
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_227
NF6876A_low_227
[»] chr7 (7 HSPs)
chr7 (7-247)||(4008418-4008658)
chr7 (7-247)||(4013810-4014050)
chr7 (9-60)||(6028592-6028643)
chr7 (17-156)||(15902797-15902936)
chr7 (50-156)||(24339650-24339756)
chr7 (108-156)||(5409787-5409835)
chr7 (17-129)||(26329354-26329466)
[»] scaffold0376 (1 HSPs)
scaffold0376 (50-134)||(6320-6404)
[»] chr5 (2 HSPs)
chr5 (50-156)||(32766888-32766994)
chr5 (28-155)||(30098312-30098439)
[»] chr1 (5 HSPs)
chr1 (49-149)||(6612123-6612223)
chr1 (50-156)||(9828052-9828158)
chr1 (108-168)||(1486648-1486708)
chr1 (50-131)||(9629870-9629951)
chr1 (11-67)||(37055890-37055946)
[»] chr8 (4 HSPs)
chr8 (34-126)||(4122224-4122316)
chr8 (108-156)||(22197687-22197735)
chr8 (100-152)||(12570458-12570510)
chr8 (100-152)||(12570684-12570736)
[»] chr3 (2 HSPs)
chr3 (50-149)||(8039787-8039886)
chr3 (50-168)||(17005552-17005670)
[»] chr6 (3 HSPs)
chr6 (50-168)||(10294115-10294233)
chr6 (22-168)||(25038004-25038150)
chr6 (49-97)||(32320673-32320721)
[»] chr2 (1 HSPs)
chr2 (50-168)||(18420367-18420485)
[»] chr4 (3 HSPs)
chr4 (7-80)||(20521870-20521943)
chr4 (108-156)||(3947717-3947765)
chr4 (108-156)||(23292942-23292990)
[»] scaffold0053 (1 HSPs)
scaffold0053 (108-156)||(8853-8901)
[»] scaffold0044 (1 HSPs)
scaffold0044 (51-131)||(53189-53269)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 4008658 - 4008418
Alignment:
Q  7 atggacatcagacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcg 106  Q
    |||||||||||| |||||||||| ||||| |||  || | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  4008658 atggacatcagatatgacacagaaactgacacgcagacacctttaataatttgataaaattacatgattcaatgtaattgtatgtgtcggtattgtatcg 4008559  T
Q  107 atgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttctgtgtggcagtttattgagcttgttgtgcagcagtttg 206  Q
    ||||| |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4008558 atgtccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgcttctgtgtggcagattattgagcttgttgtgcagcagtttg 4008459  T
Q  207 acaacgtacaagacggagttgtctttcatattgttcgacat 247  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  4008458 acaacgtacaagacggagttgtctttcatatttttcaacat 4008418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 4014050 - 4013810
Alignment:
Q  7 atggacatcagacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcg 106  Q
    |||||||||||| |||||||||| ||||| |||  || | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  4014050 atggacatcagatatgacacagaaactgacacgcagacacctttaataatttgataaaattacatgattcaatgtaattgtatgtgtcggtattgtatcg 4013951  T
Q  107 atgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttctgtgtggcagtttattgagcttgttgtgcagcagtttg 206  Q
    ||||| |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4013950 atgtccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgcttctgtgtggcagattattgagcttgttgtgcagcagtttg 4013851  T
Q  207 acaacgtacaagacggagttgtctttcatattgttcgacat 247  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  4013850 acaacgtacaagacggagttgtctttcatatttttcaacat 4013810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 6028592 - 6028643
Alignment:
Q  9 ggacatcagacatgacacagacactgatacgtcgatatctttaataatttga 60  Q
    |||||||||||| |||||||||||||| || |||||||  ||||||||||||    
T  6028592 ggacatcagacacgacacagacactgacacatcgatatggttaataatttga 6028643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 15902797 - 15902936
Alignment:
Q  17 gacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggaca 116  Q
    |||| |||||||||||||| | | ||| | |  |||||||||||||||||  ||| ||| | ||| ||| ||||||||||| |||| ||| | |||||||    
T  15902797 gacacgacacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatcggaca 15902896  T
Q  117 tgacacgtgtccgacgccaggatacgcctaatctgaggag 156  Q
     ||||| || ||||  |||||| |||| |||| |||||||    
T  15902897 cgacacatgcccgagaccaggacacgcttaatttgaggag 15902936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 24339650 - 24339756
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 149  Q
    ||||||||||| |||||  ||| ||||| ||| |||  | |||||||| | || ||| ||||||||| ||||||| |||||| || ||| ||||||||||    
T  24339650 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatc 24339749  T
Q  150 tgaggag 156  Q
     ||||||    
T  24339750 cgaggag 24339756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 5409835 - 5409787
Alignment:
Q  108 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 156  Q
    ||||||||| |||||||||||||| || ||| |||||||||| ||||||    
T  5409835 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggag 5409787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 26329466 - 26329354
Alignment:
Q  17 gacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggaca 116  Q
    |||| |||||||||||||| ||| ||| ||| |||||||||||| ||||   ||  ||||| ||| ||| ||||||||||  | || ||| |||| ||||    
T  26329466 gacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagaca 26329367  T
Q  117 tgacacgtgtccg 129  Q
     ||||||||||||    
T  26329366 cgacacgtgtccg 26329354  T

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Target: scaffold0376 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 6320 - 6404
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgcc 134  Q
    ||||||||||| |||||||||| ||||||||| ||| ||||||||||| | |||||| ||| || || |||||| ||||||||||    
T  6320 taataatttgacaaaattgcataattcaatgtaattatatgtgtcggtgtcgtatcggtgtggggcacgacacgggtccgacgcc 6404  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 32766994 - 32766888
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 149  Q
    ||||||||||| ||||| |||  ||||||||| ||| |||||||  || | || ||| ||||| | | |||||||||||||| |||||||||| ||||||    
T  32766994 taataatttgagaaaatcgcacaattcaatgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatc 32766895  T
Q  150 tgaggag 156  Q
    |||||||    
T  32766894 tgaggag 32766888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 30098312 - 30098439
Alignment:
Q  28 gacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtc 127  Q
    |||||||| ||| ||| | | |||||||||||| |||||  ||| ||||||||| ||| ||  ||||||||| |  ||  ||||||||| ||||||||||    
T  30098312 gacactgacacgacgaaaccgttaataatttgagaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtcggacacgacacgtgtc 30098411  T
Q  128 cgacgccaggatacgcctaatctgagga 155  Q
     ||| |||||| || ||||||| |||||    
T  30098412 agacaccaggacacacctaatccgagga 30098439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 6612223 - 6612123
Alignment:
Q  49 ttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaat 148  Q
    |||||||||||| |||||| ||| ||||| ||| |||  | |||||||| | || ||||||||||||| || | ||||||||| |||||| |||||||||    
T  6612223 ttaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtccgacaccaggacacgcctaat 6612124  T
Q  149 c 149  Q
    |    
T  6612123 c 6612123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 9828052 - 9828158
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 149  Q
    |||||||||||||||||  ||| ||||| ||| ||| ||||||||||| | || ||  |||| |||| |||||||||||||| || ||| ||| ||||||    
T  9828052 taataatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatc 9828151  T
Q  150 tgaggag 156  Q
     ||||||    
T  9828152 cgaggag 9828158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 1486708 - 1486648
Alignment:
Q  108 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttc 168  Q
    ||||||||| |||||||||||||| || ||| |||||||||| |||||| || ||||||||    
T  1486708 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttc 1486648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 9629951 - 9629870
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgac 131  Q
    |||||||||||||||||   || ||||| ||| ||| || |||||||| | || ||||||||||||| ||||| ||||||||    
T  9629951 taataatttgataaaatcatataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggacacgacacatgtccgac 9629870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 37055946 - 37055890
Alignment:
Q  11 acatcagacatgacacagacactgatacgtcgatatctttaataatttgataaaatt 67  Q
    ||||| |||||||||||||||||||||| ||||||    ||||||||||| ||||||    
T  37055946 acatcggacatgacacagacactgatacatcgatactgctaataatttgagaaaatt 37055890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 4122316 - 4122224
Alignment:
Q  34 gatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgt 126  Q
    |||||||||| ||| ||||||||| |||||||||  || ||||| ||| ||| ||||||||||| |||| || |||||  ||| |||||||||    
T  4122316 gatacgtcgacatcattaataattagataaaattatataattcattgtaattatatgtgtcggtgttgtgtcaatgtcaaacacgacacgtgt 4122224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 22197735 - 22197687
Alignment:
Q  108 tgtcggacatgacacgtgtccgacgccaggat-acgcctaatctgaggag 156  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||||    
T  22197735 tgtcggacatgacacgtgtccgacacc-ggatcacgcctaatctgaggag 22197687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 12570510 - 12570458
Alignment:
Q  100 tgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatctga 152  Q
    ||||||| |||| ||||  ||||||||||||| |||||| |||||||||||||    
T  12570510 tgtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctga 12570458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 12570736 - 12570684
Alignment:
Q  100 tgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatctga 152  Q
    ||||||| |||| ||||  ||||||||||||| |||||| |||||||||||||    
T  12570736 tgtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctga 12570684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 8039886 - 8039787
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 149  Q
    ||||||||||| ||||||  || ||||| ||| ||| ||||||||||| | || ||| |||||||||||| || |||||||| || ||| |||| |||||    
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatc 8039787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 17005670 - 17005552
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 149  Q
    |||||||||||||||||   || ||||| ||| ||| || |||||||| |||| | | |||| ||||| ||||||||| ||| |||||| ||  ||||||    
T  17005670 taataatttgataaaatcatataattcagtgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgtctgacaccaggacacctctaatc 17005571  T
Q  150 tgaggagagtatgtgcttc 168  Q
     |||||| || ||||||||    
T  17005570 cgaggagtgtttgtgcttc 17005552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 10294115 - 10294233
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 149  Q
    ||||||||||| | ||| ||||  |||||||| ||| ||||||||||| | || | | ||||||||| |||| ||||||||  | |||| ||  ||||||    
T  10294115 taataatttgagataatcgcatatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtccgaaactaggacacagctaatc 10294214  T
Q  150 tgaggagagtatgtgcttc 168  Q
    ||||||| || ||||||||    
T  10294215 tgaggagtgtctgtgcttc 10294233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 25038150 - 25038004
Alignment:
Q  22 gacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgaca 121  Q
    |||||||| ||||| |||| || | | |||||||||||| |||||| ||| ||| | ||| |||  |  |||||||||||| | | |||| |||| ||||    
T  25038150 gacacagatactgacacgttgacaccgttaataatttgagaaaattacataatttagtgtaattacaaatgtcggtattgtgttggtgtccgacacgaca 25038051  T
Q  122 cgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttc 168  Q
    |||||||||| |||| | |||| | | ||||| || |||||||||||    
T  25038050 cgtgtccgacaccagaacacgcatgacctgagaagtgtatgtgcttc 25038004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 32320721 - 32320673
Alignment:
Q  49 ttaataatttgataaaattgcatgattcaatgtcattgtatgtgtcggt 97  Q
    ||||||||||||||||||  ||| ||||||||||||| ||||| |||||    
T  32320721 ttaataatttgataaaatcacataattcaatgtcattatatgtatcggt 32320673  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 18420485 - 18420367
Alignment:
Q  50 taataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 149  Q
    ||||||||||| |||||  ||| ||||||||  ||| || |||||||| |||| || ||||||||||||||| |||| ||||   | || ||||||||||    
T  18420485 taataatttgagaaaatcacataattcaatgcaattataagtgtcggtgttgtgtccatgtcggacatgacaagtgttcgacattatgacacgcctaatc 18420386  T
Q  150 tgaggagagtatgtgcttc 168  Q
     ||| || || ||||||||    
T  18420385 cgagaagtgtctgtgcttc 18420367  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 20521943 - 20521870
Alignment:
Q  7 atggacatcagacatgacacagacactgatacgtcgatatctttaataatttgataaaattgcatgattcaatg 80  Q
    ||||||| |||||| ||||| |||||||| ||| ||||| |  |||||||||||||||||  ||| ||||||||    
T  20521943 atggacaccagacacgacacggacactgacacgccgataccgataataatttgataaaatcacataattcaatg 20521870  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 3947765 - 3947717
Alignment:
Q  108 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 156  Q
    ||||||||| |||||||||||||| |||||| || ||||||| ||||||    
T  3947765 tgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggag 3947717  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 23292990 - 23292942
Alignment:
Q  108 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 156  Q
    ||||||||| |||||||||||||| || ||| |||||||||| ||||||    
T  23292990 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggag 23292942  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 8853 - 8901
Alignment:
Q  108 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 156  Q
    ||||||||| |||||||||||||| ||  || |||||||||||||||||    
T  8853 tgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggag 8901  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 53189 - 53269
Alignment:
Q  51 aataatttgataaaattgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgac 131  Q
    |||||||||| |||||  ||| ||||| ||| ||| || ||||||||   || ||| ||||||||||||||||||||||||    
T  53189 aataatttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgac 53269  T

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