View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_228 (Length: 250)
Name: NF6876A_low_228
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_228 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 53633011 - 53633126
Alignment:
| Q |
135 |
gtaaatcaagtcatttgacgcattattttgtcttcctcctcttggtattgtaagttatacaattatgtgtaactaatttctctgcgttgatattatgtat |
234 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53633011 |
gtaaatcaagtcatttgacgtattattttgtcttcctcctcttggtattgtaagttatacaattacgtgtaactaatttctctgcgttgatattatgtat |
53633110 |
T |
|
| Q |
235 |
aattagccaggaatct |
250 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
53633111 |
aattggtcaggaatct |
53633126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 53632881 - 53632977
Alignment:
| Q |
10 |
ctggtggttcaagtaagaggctcgtgttttgaaacagggcaaaattgtcgaactaaaaactgacttgcccaacaagtgatgaagttttaaaacccgc |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
53632881 |
ctggtggttcaagtcagaggctcgtgttttgaaacagggcaaaattgtcgaactaaaaactggcttgcccaacaagtgatggagttttaaaacccgc |
53632977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 21917573 - 21917628
Alignment:
| Q |
162 |
ttgtcttcctcctcttggtattgtaagttatacaattatgtgtaactaatttctct |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
21917573 |
ttgtcatcctcctcttggtattgtaagttatacaatcatgtgtaactaatatctct |
21917628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University