View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_23 (Length: 441)
Name: NF6876A_low_23
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_23 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] scaffold0156 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0225 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 34723494 - 34723929
Alignment:
| Q |
6 |
gcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34723494 |
gcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaac |
34723593 |
T |
|
| Q |
106 |
tcctcagaaaaaccattaatgacttcgacctcctcctccagtaaatcaactgattcaccttttaactcaatagctgacattttatctttcaaagacaaaa |
205 |
Q |
| |
|
|||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
34723594 |
tcctcagaaaaaccatgaaggtcctcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttcaaagacaaaa |
34723693 |
T |
|
| Q |
206 |
tttttgcagataaattttgtgtatgagtctgacaaatatacatcagggccgaacgtttttcatgcatctgttaacagcagcagttcccctatttggtctt |
305 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34723694 |
tttttgcaggtaaattttgtgtatgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccctatttggtctt |
34723793 |
T |
|
| Q |
306 |
ccgtcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcat |
405 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34723794 |
ccatcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcat |
34723893 |
T |
|
| Q |
406 |
tcttggatctcaaatccccatcatagacatccatga |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34723894 |
tcttggatctcaaatccccatcatagacatccatga |
34723929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 34602218 - 34602652
Alignment:
| Q |
6 |
gcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34602218 |
gcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaac |
34602317 |
T |
|
| Q |
106 |
tcctcagaaaaaccattaatgacttcgacctcctcctccagtaaatcaactgattcaccttttaactcaatagctgacattttatctttcaaagacaaaa |
205 |
Q |
| |
|
|||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
34602318 |
tcctcagaaaaaccatgaaggtcctcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttcaaagacaaaa |
34602417 |
T |
|
| Q |
206 |
tttttgcagataaattttgtgtatgagtctgacaaatatacatcagggccgaacgtttttcatgcatctgttaacagcagcagttcccctatttggtctt |
305 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34602418 |
tttttgcaggtaaattttgtg-atgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccctatttggtctt |
34602516 |
T |
|
| Q |
306 |
ccgtcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcat |
405 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34602517 |
ccatcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcat |
34602616 |
T |
|
| Q |
406 |
tcttggatctcaaatccccatcatagacatccatga |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34602617 |
tcttggatctcaaatccccatcatagacatccatga |
34602652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 32199375 - 32199445
Alignment:
| Q |
13 |
aaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt |
83 |
Q |
| |
|
|||||||| ||||||||||| | ||| | ||||||||| || || || ||||||||||||||||||||||| |
|
|
| T |
32199375 |
aaaaacttcgaatttgcatctccttccctcaaccattgaattctggactgttgccaacaaatactagaatt |
32199445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0156 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 233 - 441
Target Start/End: Complemental strand, 17410 - 17202
Alignment:
| Q |
233 |
tctgacaaatatacatcagggccgaacgtttttcatgcatctgttaacagcagcagttcccctatttggtcttccgtcatccgtgctaaagagattctaa |
332 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||| |||||||||||| || |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17410 |
tctgataaatatacttcagggccgaacatttttcatgcatatgttaacagcagaagctcccctatttggtcttccatcattcgtgctaaagagattctaa |
17311 |
T |
|
| Q |
333 |
aaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcattcttggatctcaaatccccatcataga |
432 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17310 |
aaaatggctattcttggcacgtagggtctggctattcttctttttggttcaacctttggagtgattttggcattcttggatctcaaatccccatcataga |
17211 |
T |
|
| Q |
433 |
catccatga |
441 |
Q |
| |
|
||||||||| |
|
|
| T |
17210 |
catccatga |
17202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 13155471 - 13155360
Alignment:
| Q |
10 |
tgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcct |
109 |
Q |
| |
|
||||| ||||| | ||| ||||||| |||||| ||||||||||||| || ||||||||||||||||||||||| | | || || ||||||||||||| |
|
|
| T |
13155471 |
tgaaagaacttagtattcgcatccccttcacgtaaccattgcatccgagactgttgccaacaaatactagaatttatctgagacaacgaaaacaactcct |
13155372 |
T |
|
| Q |
110 |
cagaaaaaccat |
121 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
13155371 |
cggaaacaccat |
13155360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 8811558 - 8811484
Alignment:
| Q |
9 |
atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt |
83 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||| |||| | || ||||||||||||||||| ||||| |
|
|
| T |
8811558 |
atgaaaaaactttgaattggcatccccttcacgcaaccactgcaatcgagactgttgccaacaaatacttgaatt |
8811484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 33099514 - 33099472
Alignment:
| Q |
9 |
atgaaaaaacttggaatttgcatccctttcacgcaaccattgc |
51 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
33099514 |
atgaaaaaacttggaattcgcatccctttcacgtaaccattgc |
33099472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 54873382 - 54873456
Alignment:
| Q |
9 |
atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt |
83 |
Q |
| |
|
|||||| || || ||||| ||||||| ||||| |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
54873382 |
atgaaagaatttagaattagcatccccttcacataaccattgcagacgagattgttgccaacaaatactagaatt |
54873456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 441
Target Start/End: Complemental strand, 22663513 - 22663407
Alignment:
| Q |
335 |
aatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcattcttggatctcaaatccccatcatagaca |
434 |
Q |
| |
|
||||||||||||||||| | ||| ||||| ||||| || || |||||||||| |||||||| ||||| || ||| ||||||||||||||||||||| |
|
|
| T |
22663513 |
aatggctattcttggcgagcaggttctggttcttcatcgttttggttcagccattggagtggctttggatgcctcggagctcaaatccccatcatagaca |
22663414 |
T |
|
| Q |
435 |
tccatga |
441 |
Q |
| |
|
| ||||| |
|
|
| T |
22663413 |
tacatga |
22663407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 38359635 - 38359713
Alignment:
| Q |
8 |
aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaa |
86 |
Q |
| |
|
|||||||| | || ||||||||||| | ||||| | |||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
38359635 |
aatgaaaatatttagaatttgcatcgccttcactaagccattgattcctcgattgttgccaacatatactagtattcaa |
38359713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 27852414 - 27852279
Alignment:
| Q |
10 |
tgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcct |
109 |
Q |
| |
|
||||| ||||| || |||||||| | |||||| |||||||| | || ||| ||||||||||||||||| ||||| | || ||||| ||||| ||||||| |
|
|
| T |
27852414 |
tgaaagaacttagagtttgcatctccttcacgtaaccattgtaaccgcgactgttgccaacaaatacttgaattaatccgagataacgaaaataactcct |
27852315 |
T |
|
| Q |
110 |
cagaaaaaccattaatgacttcgacctcctcctcca |
145 |
Q |
| |
|
| ||||| | || || |||||| ||||||||||| |
|
|
| T |
27852314 |
ctgaaaacctatgcatatcttcgatctcctcctcca |
27852279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 8773012 - 8773083
Alignment:
| Q |
8 |
aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag |
79 |
Q |
| |
|
|||||||| |||| ||||||||||| | |||||| | || ||| ||||||||||||||||||| ||||||| |
|
|
| T |
8773012 |
aatgaaaatacttagaatttgcatcgccttcacgaagcctttgattcctcgattgttgccaacatatactag |
8773083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 28398522 - 28398451
Alignment:
| Q |
8 |
aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag |
79 |
Q |
| |
|
|||||||| |||| ||||||||||| | |||||| | |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
28398522 |
aatgaaaatacttagaatttgcatcgccttcacgaagccattgattcctcgattgttgccaacatatactag |
28398451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 575318 - 575386
Alignment:
| Q |
283 |
cagcagttcccctatttggtcttccgtcatccgtgctaaagagattctaaaaaatggctattcttggcg |
351 |
Q |
| |
|
||||||||| || | |||||| || |||| ||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
575318 |
cagcagttcacccacttggtcatctatcatacgtgctaaagatattctcaaaaatggttattcttggcg |
575386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 25527655 - 25527584
Alignment:
| Q |
9 |
atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactaga |
80 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||| ||||||||||| || || |||||||||| |||||||| |
|
|
| T |
25527655 |
atgaaaaaactttgaatttgcttccccttcacgtaaccattgcattcttgactgttgccaacggatactaga |
25527584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 441
Target Start/End: Complemental strand, 39227361 - 39227255
Alignment:
| Q |
335 |
aatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcattcttggatctcaaatccccatcatagaca |
434 |
Q |
| |
|
||||||||||||||||| | ||| ||||| ||||| || || |||||||||| |||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
39227361 |
aatggctattcttggcgagcaggttctggttcttcatcgttttggttcagccattggagtggcttcggctgcctcggagctcaaacccccatcatagaca |
39227262 |
T |
|
| Q |
435 |
tccatga |
441 |
Q |
| |
|
| ||||| |
|
|
| T |
39227261 |
tacatga |
39227255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 6891736 - 6891666
Alignment:
| Q |
9 |
atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag |
79 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||| |||||| | || |||||||||||||||||||||| |
|
|
| T |
6891736 |
atgaaaaaaattggaattcgcatccccttcacgtaaccatcgatgccgggattgttgccaacaaatactag |
6891666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 6923498 - 6923424
Alignment:
| Q |
9 |
atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt |
83 |
Q |
| |
|
|||||| || || ||||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
6923498 |
atgaaagaaatttgaatttgcacccccttcacataaccattgcagacgtgattgttgccaacaaatactagaatt |
6923424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 3999 - 3942
Alignment:
| Q |
58 |
gattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcctcagaaa |
115 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || ||||| |||||||||||||| |||| |
|
|
| T |
3999 |
gattgttgccaacaaacactagcattcacacgagataacgaaaacaactcctctgaaa |
3942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University