View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_231 (Length: 250)

Name: NF6876A_low_231
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_231
NF6876A_low_231
[»] scaffold0197 (2 HSPs)
scaffold0197 (10-213)||(19254-19457)
scaffold0197 (14-213)||(14403-14602)
[»] scaffold0028 (1 HSPs)
scaffold0028 (10-213)||(149045-149248)
[»] chr8 (8 HSPs)
chr8 (10-213)||(35745184-35745387)
chr8 (14-213)||(10684358-10684557)
chr8 (49-181)||(6311124-6311254)
chr8 (62-189)||(39784965-39785091)
chr8 (62-189)||(25328420-25328545)
chr8 (49-161)||(7290055-7290167)
chr8 (94-160)||(18853353-18853418)
chr8 (56-160)||(10689289-10689392)
[»] chr6 (13 HSPs)
chr6 (10-213)||(16838537-16838740)
chr6 (10-213)||(6005210-6005413)
chr6 (10-213)||(5343273-5343477)
chr6 (8-213)||(33330532-33330739)
chr6 (8-213)||(33336029-33336236)
chr6 (28-189)||(28155676-28155837)
chr6 (27-213)||(6438295-6438480)
chr6 (62-189)||(14737718-14737843)
chr6 (62-189)||(28184320-28184448)
chr6 (56-213)||(11856766-11856921)
chr6 (56-189)||(14742571-14742702)
chr6 (56-186)||(22010832-22010960)
chr6 (56-160)||(30125940-30126044)
[»] chr5 (18 HSPs)
chr5 (10-213)||(2785168-2785371)
chr5 (10-213)||(31401939-31402142)
chr5 (10-213)||(31397082-31397285)
chr5 (10-213)||(33791109-33791312)
chr5 (10-213)||(33767972-33768175)
chr5 (28-213)||(37561551-37561739)
chr5 (28-213)||(37556729-37556917)
chr5 (27-213)||(28807678-28807867)
chr5 (49-181)||(1457290-1457420)
chr5 (49-181)||(27444796-27444926)
chr5 (49-164)||(43592120-43592235)
chr5 (49-181)||(27449640-27449770)
chr5 (49-181)||(43598550-43598680)
chr5 (49-181)||(43604042-43604172)
chr5 (49-181)||(43609534-43609664)
chr5 (62-164)||(15044528-15044630)
chr5 (63-164)||(30631249-30631349)
chr5 (63-115)||(24135742-24135794)
[»] scaffold0259 (1 HSPs)
scaffold0259 (10-213)||(2340-2543)
[»] chr3 (15 HSPs)
chr3 (8-213)||(10207726-10207932)
chr3 (8-218)||(2677174-2677386)
chr3 (8-218)||(2673018-2673230)
chr3 (14-213)||(8512008-8512208)
chr3 (14-213)||(8516888-8517088)
chr3 (14-213)||(32475277-32475476)
chr3 (14-213)||(32480134-32480334)
chr3 (10-156)||(24967957-24968103)
chr3 (28-189)||(18656251-18656410)
chr3 (56-186)||(22173330-22173458)
chr3 (49-160)||(2671725-2671836)
chr3 (49-160)||(7167092-7167201)
chr3 (49-164)||(28503995-28504108)
chr3 (94-160)||(8739249-8739314)
chr3 (94-160)||(9091487-9091552)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-213)||(182058-182257)
[»] chr7 (13 HSPs)
chr7 (14-213)||(16879865-16880064)
chr7 (14-213)||(16884721-16884920)
chr7 (14-213)||(24261417-24261616)
chr7 (14-213)||(24266296-24266495)
chr7 (22-213)||(21812339-21812531)
chr7 (27-213)||(19992105-19992292)
chr7 (44-189)||(24024451-24024594)
chr7 (56-189)||(12396730-12396861)
chr7 (56-189)||(12406150-12406281)
chr7 (62-189)||(31109725-31109849)
chr7 (68-189)||(4866548-4866667)
chr7 (36-160)||(20357672-20357797)
chr7 (94-160)||(2057806-2057871)
[»] chr1 (7 HSPs)
chr1 (35-213)||(43988580-43988758)
chr1 (27-218)||(39445288-39445479)
chr1 (27-213)||(25445195-25445381)
chr1 (44-189)||(44023997-44024140)
chr1 (27-213)||(1055117-1055303)
chr1 (104-189)||(41386566-41386650)
chr1 (96-189)||(41398055-41398147)
[»] chr2 (7 HSPs)
chr2 (14-213)||(19344213-19344412)
chr2 (14-213)||(19349071-19349270)
chr2 (62-213)||(32246578-32246728)
chr2 (62-189)||(39812129-39812255)
chr2 (56-186)||(44312759-44312887)
chr2 (49-160)||(9296540-9296651)
chr2 (49-114)||(14291380-14291446)
[»] chr4 (9 HSPs)
chr4 (27-213)||(18855520-18855706)
chr4 (44-213)||(3813817-3813986)
chr4 (56-213)||(9224542-9224697)
chr4 (28-189)||(5732481-5732640)
chr4 (56-189)||(9229329-9229460)
chr4 (62-213)||(45347959-45348108)
chr4 (62-213)||(45357438-45357587)
chr4 (49-181)||(51520283-51520413)
chr4 (49-181)||(56146840-56146970)
[»] scaffold0464 (1 HSPs)
scaffold0464 (27-213)||(156-342)
[»] scaffold0355 (2 HSPs)
scaffold0355 (44-189)||(9764-9907)
scaffold0355 (44-189)||(13-148)
[»] scaffold0135 (1 HSPs)
scaffold0135 (56-189)||(35197-35328)
[»] scaffold0127 (1 HSPs)
scaffold0127 (104-189)||(34132-34216)
[»] scaffold0777 (1 HSPs)
scaffold0777 (166-213)||(6294-6341)
[»] scaffold0479 (1 HSPs)
scaffold0479 (126-213)||(13142-13228)


Alignment Details
Target: scaffold0197 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 19254 - 19457
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  19254 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 19353  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  19354 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 19453  T
Q  210 caac 213  Q
    ||||    
T  19454 caac 19457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 14403 - 14602
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  14403 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 14501  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  14502 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaa 14601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 149045 - 149248
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  149045 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 149144  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  149145 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 149244  T
Q  210 caac 213  Q
    ||||    
T  149245 caac 149248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 35745387 - 35745184
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  35745387 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 35745288  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35745287 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 35745188  T
Q  210 caac 213  Q
    ||||    
T  35745187 caac 35745184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 10684358 - 10684557
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  10684358 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 10684456  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  10684457 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 10684556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 6311254 - 6311124
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| |||||||||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||  |||||||  ||||| ||||| | |||||||||    
T  6311254 ttgttatctcttagtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 6311155  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    ||||||||||||||| ||||||| |||||||||    
T  6311154 gctccacacatcatt-gtttatt-tcattggtg 6311124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 39784965 - 39785091
Alignment:
Q  62 gtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||| ||| |||| ||||||||||||||| || |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  39784965 gtgtggttttgctatacactag-cttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 39785063  T
Q  161 attggtttattctcattggtgcgaaggtt 189  Q
     |||||||||| ||||||||| |||||||    
T  39785064 tttggtttatt-tcattggtgtgaaggtt 39785091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 25328420 - 25328545
Alignment:
Q  62 gtgtggttttgctatacattagacttaggct-gttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||| |||  ||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||| ||||||    
T  25328420 gtgtggttttgctatacactag--ttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatc 25328517  T
Q  161 attggtttattctcattggtgcgaaggtt 189  Q
    |||| |||||| |||||| || |||||||    
T  25328518 attgatttatt-tcattgttgtgaaggtt 25328545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 7290055 - 7290167
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| |||||||||||||| |||||| |||||||  ||||| ||||| | ||||| |||    
T  7290055 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctctt 7290154  T
Q  149 gctccacacatca 161  Q
    |||||||||||||    
T  7290155 gctccacacatca 7290167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 18853353 - 18853418
Alignment:
Q  94 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||| ||||||||||||||||  ||||||| |||||||||||| | ||||| |||||||||||||||    
T  18853353 tttttttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc 18853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 10689289 - 10689392
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctcca 154  Q
    ||||| ||||||||||||| |||| || |||  || |||||| ||||||||| |||||||  ||||| | |||||||||||| | ||||| |||||||||    
T  10689289 ctctttgtgtggttttgctctacactacactagggttgtttttgttgttgtt-gcttggaaaccattag-actcatagattaccactatctcttgctcca 10689386  T
Q  155 cacatc 160  Q
    ||||||    
T  10689387 cacatc 10689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 16838740 - 16838537
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  16838740 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 16838641  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16838640 ttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 16838541  T
Q  210 caac 213  Q
    ||||    
T  16838540 caac 16838537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 6005413 - 6005210
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  6005413 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 6005314  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  6005313 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattta 6005214  T
Q  210 caac 213  Q
    ||||    
T  6005213 caac 6005210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 5343477 - 5343273
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtttg 108  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |    
T  5343477 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggtttttgctatactttaggcttaggctgttttgttgttgttag 5343378  T
Q  109 cttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  5343377 cttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgacttattctcattggtgtgaaggttcattagttgagccggattc 5343278  T
Q  209 acaac 213  Q
    |||||    
T  5343277 acaac 5343273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 33330532 - 33330739
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgt 105  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33330532 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggtttttgctatacattaggcttaggctgttttgttgttgt 33330631  T
Q  106 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccgga 205  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  33330632 tagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctaattggtgtgaaggttcattagttgagccgga 33330731  T
Q  206 ttcacaac 213  Q
    ||||||||    
T  33330732 ttcacaac 33330739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 33336029 - 33336236
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttg-ctatacattagacttaggctgttttgttgttgt 105  Q
    ||||||||||||| |||  ||| || ||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  33336029 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggtttttactatacattaggcttaggctgttttgttgttgt 33336128  T
Q  106 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccgga 205  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33336129 tagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 33336228  T
Q  206 ttcacaac 213  Q
    ||||||||    
T  33336229 ttcacaac 33336236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 28155676 - 28155837
Alignment:
Q  28 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| ||||| || ||||||||     
T  28155676 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttgaagaccatttgct 28155775  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  |||||||| |||||||    
T  28155776 ctcattgattatcactatcacttgctccacacatcatt-gtttatt-gcattggtgtgaaggtt 28155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 6438480 - 6438295
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| |||||| |    
T  6438480 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccattgg 6438383  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
      ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||| |||||||| || || || ||||| |||||||    
T  6438382 ttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggttcgtttgtagaaccggaatcacaac 6438295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 14737718 - 14737843
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  14737718 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 14737817  T
Q  162 ttggtttattctcattggtgcgaaggtt 189  Q
    || ||||||| ||||||||| |||||||    
T  14737818 tt-gtttatt-tcattggtgtgaaggtt 14737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 28184448 - 28184320
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggcca--tttgcactcatagattatctctatcacttgctccacacat 159  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||  ||||  ||||| ||||||| ||||||||||||||||||||    
T  28184448 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacat 28184349  T
Q  160 cattggtttattctcattggtgcgaaggtt 189  Q
    |||||||||||| ||||||||| |||||||    
T  28184348 cattggtttatt-tcattggtgtgaaggtt 28184320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 213
Target Start/End: Complemental strand, 11856921 - 11856766
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  11856921 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 11856822  T
Q  156 acatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    |||||||| ||||||| ||||||||| |||||||  ||  |||| |||||||||||||    
T  11856821 acatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaac 11856766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 14742571 - 14742702
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||| ||||||||| |||||||  ||||| ||||||| ||||||||||||||||    
T  14742571 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccac 14742670  T
Q  156 acatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||| ||||||| ||||||||| |||||||    
T  14742671 acatcatt-gtttatt-tcattggtgtgaaggtt 14742702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 22010832 - 22010960
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| | | ||  ||| | ||||||||||||||||||||| |||||||  ||||| ||||| | ||||||||||||||||    
T  22010832 ctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccac 22010931  T
Q  156 acatcattggtttattctcattggtgcgaag 186  Q
    |||||||| ||||||| ||||||||| ||||    
T  22010932 acatcatt-gtttatt-tcattggtgtgaag 22010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 30125940 - 30126044
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctcca 154  Q
    ||||| ||||||||||||| |||| ||| ||  ||||||||| ||||| ||| |||||||| |||||||  ||||||||||||| ||| | |||||||||    
T  30125940 ctctttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctcca 30126038  T
Q  155 cacatc 160  Q
    ||||||    
T  30126039 cacatc 30126044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 2785371 - 2785168
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2785371 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 2785272  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2785271 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 2785172  T
Q  210 caac 213  Q
    ||||    
T  2785171 caac 2785168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 31401939 - 31402142
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||    
T  31401939 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggctgttttgttgttgttagc 31402038  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  31402039 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattca 31402138  T
Q  210 caac 213  Q
    ||||    
T  31402139 caac 31402142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 31397082 - 31397285
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  31397082 ggtgtttgtttgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggatgttttgttgttgttagc 31397181  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  31397182 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattca 31397281  T
Q  210 caac 213  Q
    ||||    
T  31397282 caac 31397285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 33791312 - 33791109
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33791312 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagc 33791213  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  33791212 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattca 33791113  T
Q  210 caac 213  Q
    ||||    
T  33791112 caac 33791109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 33768175 - 33767972
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  |||||||||||||| ||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33768175 ggtgtttgttcttttccttttatcgtttatcctgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagc 33768076  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  33768075 ttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattca 33767976  T
Q  210 caac 213  Q
    ||||    
T  33767975 caac 33767972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 37561551 - 37561739
Alignment:
Q  28 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| |||||||||||||||||     
T  37561551 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgct 37561650  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaagg-ttcattagttgagccggattcacaac 213  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| ||||| || ||||||||| |||||||||||||    
T  37561651 ctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggtttgattagttgaaccggattcacaac 37561739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 37556729 - 37556917
Alignment:
Q  28 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| |||||||||||||||||     
T  37556729 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgct 37556828  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaag-gttcattagttgagccggattcacaac 213  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| ||||  || ||||||||| |||||||||||||    
T  37556829 ctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaagatttgattagttgaaccggattcacaac 37556917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 28807678 - 28807867
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggtttt--gctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatt 121  Q
    ||||| ||||||||||||  |||||||||||||||| | ||||||||  |||||||| ||| |||||| |||||| ||||||||||||||||| ||||||    
T  28807678 ttttaccgtttatcttgtttatgcttgttagctctttgagtggttttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatt 28807775  T
Q  122 tgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaagg-ttcattagttgagccggattcacaac 213  Q
    ||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||    
T  28807776 tgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaac 28807867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 1457290 - 1457420
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  1457290 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 1457389  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    ||||||||||||||| ||||||| |||||||||    
T  1457390 gctccacacatcatt-gtttatt-tcattggtg 1457420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 27444926 - 27444796
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| | ||||||||||||||||||| ||||||| |||||| ||||| | ||||| |||    
T  27444926 ttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctctt 27444827  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    ||||||||||||||| ||||||| |||||||||    
T  27444826 gctccacacatcatt-gtttatt-tcattggtg 27444796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 43592235 - 43592120
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  43592235 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 43592136  T
Q  149 gctccacacatcattg 164  Q
    ||||||||||||||||    
T  43592135 gctccacacatcattg 43592120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 27449770 - 27449640
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| | ||||||||||||||||||| ||||||| |||||| ||||| | ||||| |||    
T  27449770 ttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctctt 27449671  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    |||||||| |||||| ||||||| |||||||||    
T  27449670 gctccacatatcatt-gtttatt-tcattggtg 27449640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 43598680 - 43598550
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43598680 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43598581  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    ||||||||||||||| ||||||| |||||||||    
T  43598580 gctccacacatcatt-gtttatt-tcattggtg 43598550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 43604172 - 43604042
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43604172 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43604073  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    ||||||||||||||| ||||||| |||||||||    
T  43604072 gctccacacatcatt-gtttatt-tcattggtg 43604042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 43609664 - 43609534
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43609664 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43609565  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    ||||||||||||||| ||||||| |||||||||    
T  43609564 gctccacacatcatt-gtttatt-tcattggtg 43609534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 15044630 - 15044528
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    |||||||||||||||||| ||| ||  |||||||||||||||||| | |||||| |||||||  ||||| ||||| | ||||||||||||| |||| |||    
T  15044630 gtgtggttttgctatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtca 15044531  T
Q  162 ttg 164  Q
    |||    
T  15044530 ttg 15044528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 30631349 - 30631249
Alignment:
Q  63 tgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcat 162  Q
    |||| |||||||||||| ||| ||  |||||||||||||||||| ||||| |  |||||||  ||||||||||| | ||||| |||||||||||||||||    
T  30631349 tgtgattttgctatacactagtctagggctgttttgttgttgtt-gcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcat 30631251  T
Q  163 tg 164  Q
    ||    
T  30631250 tg 30631249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 24135794 - 24135742
Alignment:
Q  63 tgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggag 115  Q
    |||||| ||||| |||| ||| ||  |||||||||||||||||||||||||||    
T  24135794 tgtggtgttgctctacactagtctagggctgttttgttgttgtttgcttggag 24135742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 2340 - 2543
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2340 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 2439  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  2440 ttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 2539  T
Q  210 caac 213  Q
    ||||    
T  2540 caac 2543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 10207932 - 10207726
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 106  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10207932 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 10207833  T
Q  107 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggat 206  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10207832 agcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggat 10207733  T
Q  207 tcacaac 213  Q
    |||||||    
T  10207732 tcacaac 10207726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 2677174 - 2677386
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 106  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2677174 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 2677273  T
Q  107 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaagg-ttcattagttgagccgga 205  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  2677274 agcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccgga 2677373  T
Q  206 ttcacaacgaaaa 218  Q
    |||||||| ||||    
T  2677374 ttcacaacaaaaa 2677386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 2673018 - 2673230
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 106  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2673018 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 2673117  T
Q  107 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaagg-ttcattagttgagccgga 205  Q
     ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  2673118 agcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccgga 2673217  T
Q  206 ttcacaacgaaaa 218  Q
    |||||||| ||||    
T  2673218 ttcacaacaaaaa 2673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 8512208 - 8512008
Alignment:
Q  14 tttgttcgttttgttttatcgttt-atcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttg 112  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  8512208 tttgttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttg 8512109  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8512108 gaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 8512009  T
Q  213 c 213  Q
    |    
T  8512008 c 8512008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 8517088 - 8516888
Alignment:
Q  14 tttgttcgttttgttttatcgttt-atcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttg 112  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  8517088 tttgttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttg 8516989  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8516988 gaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 8516889  T
Q  213 c 213  Q
    |    
T  8516888 c 8516888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 32475476 - 32475277
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||    
T  32475476 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttg 32475378  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  32475377 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 32475278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 32480334 - 32480134
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttg-tttgcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||    
T  32480334 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttg 32480236  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattgg-tttattctcattggtgcgaaggttcattagttgagccggattcaca 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  32480235 gaggccatttgcactcatagattacctctatctcttgctccacacatctttggatttattctcattggtgtgaaggttcattagttgagccggattcaca 32480136  T
Q  212 ac 213  Q
    ||    
T  32480135 ac 32480134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 24968103 - 24967957
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  24968103 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 24968004  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccaca 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24968003 ttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 18656410 - 18656251
Alignment:
Q  28 tttatcgtttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||      
T  18656410 tttaccgtttatcttgtttgctttgttagctctttgtgtggtttttctatacactag-cttagggctgttttgttgttgttagcttggagaccatttgtt 18656312  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    ||||| ||||| | | |||||||||||||||||||||||   |||| ||||||||| |||||||    
T  18656311 ctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtt 18656251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 22173330 - 22173458
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  22173330 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 22173429  T
Q  156 acatcattggtttattctcattggtgcgaag 186  Q
    |||||||| ||||||| ||||||||| ||||    
T  22173430 acatcatt-gtttatt-tcattggtgtgaag 22173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 2671725 - 2671836
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcact 147  Q
    |||||| ||||| |||||||||| || |||| ||||||  ||||||||| |||||||||||||||||| |||||||  ||||||||||| | ||||| ||    
T  2671725 ttgttatctctttgtgtggtttttctctacactagactagggctgtttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctct 2671823  T
Q  148 tgctccacacatc 160  Q
    |||||||||||||    
T  2671824 tgctccacacatc 2671836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 7167201 - 7167092
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| ||||||||||||| |||| ||| ||  |||||||||||||||| |||||||||  ||||||   ||||||||||| | ||||| |||    
T  7167201 ttgttatctctttgtgtggttttgctctacactagtctagggctgttttgttgttg-ttgcttggaaaccattt-tgctcatagattaccactatctctt 7167104  T
Q  149 gctccacacatc 160  Q
    ||||||||||||    
T  7167103 gctccacacatc 7167092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 28503995 - 28504108
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| |   |||||||||||||||| |||||||||  ||||||   ||||||||||||| ||| |  ||    
T  28503995 ttgttatctctttgtgtggttttgctatacactagtcaagggctgttttgttgttg-ttgcttggaaaccattt-ttctcatagattatcactacctttt 28504092  T
Q  149 gctccacacatcattg 164  Q
    ||||||||||||||||    
T  28504093 gctccacacatcattg 28504108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 8739249 - 8739314
Alignment:
Q  94 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| | ||||  |||||||||||||||    
T  8739249 ttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatc 8739314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 9091487 - 9091552
Alignment:
Q  94 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| | ||||  |||||||||||||||    
T  9091487 ttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatc 9091552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 182058 - 182257
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  182058 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 182156  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  182157 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 182256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 16880064 - 16879865
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  16880064 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 16879966  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  16879965 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 16879866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 16884920 - 16884721
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  16884920 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 16884822  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  16884821 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 16884722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 24261417 - 24261616
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  24261417 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 24261515  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  24261516 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaa 24261615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 24266296 - 24266495
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  24266296 tttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 24266394  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  24266395 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 24266494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 21812339 - 21812531
Alignment:
Q  22 ttttgttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggcc 118  Q
    |||| ||||| ||||||||||||  |||||||||| ||||| |||||||||||||||||| ||| |||||| |||||| ||||||||| ||||||| |||    
T  21812339 ttttcttttaccgtttatcttgtttatgcttgttaactctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgttagcttggaagcc 21812436  T
Q  119 atttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaagg-ttcattagttgagccggattcacaac 213  Q
    |||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||  ||||||||||||    
T  21812437 atttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaatcggattcacaac 21812531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 19992292 - 19992105
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||  ||||||| ||||||||    
T  19992292 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtaagcttggaagccatttg 19992195  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggtt-cattagttgagccggattcacaac 213  Q
      ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||||||| |||||||||| |||||||||||||    
T  19992194 ttctcattgattatcactatcacctgctccacacatctttggtttatt-tcattggtgtgaaggttccattagttgaaccggattcacaac 19992105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 24024451 - 24024594
Alignment:
Q  44 tatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctat 143  Q
    ||||||||||||||||| |||||||||||||||| | ||| | ||||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||    
T  24024451 tatgcttgttagctctttgtgtggttttgctatatactagtcataggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactat 24024550  T
Q  144 cacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||||    
T  24024551 cacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 24024594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 12396861 - 12396730
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  12396861 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 12396762  T
Q  156 acatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||| ||||||| ||||||||| |||||||    
T  12396761 acatcatt-gtttatt-tcattggtgtgaaggtt 12396730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 12406281 - 12406150
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  12406281 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 12406182  T
Q  156 acatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||| ||||||| ||||||||| |||||||    
T  12406181 acatcatt-gtttatt-tcattggtgtgaaggtt 12406150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 31109725 - 31109849
Alignment:
Q  62 gtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||| |||  ||||| |||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||| ||||||||    
T  31109725 gtgtggttttgctatacactag--ttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatc 31109822  T
Q  161 attggtttattctcattggtgcgaaggtt 189  Q
    ||| ||||||| ||||||||| |||||||    
T  31109823 att-gtttatt-tcattggtgtgaaggtt 31109849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 4866667 - 4866548
Alignment:
Q  68 ttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtt 167  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| |||    
T  4866667 ttttgctatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcatt-gtt 4866569  T
Q  168 tattctcattggtgcgaaggtt 189  Q
    |||| ||||||||| |||||||    
T  4866568 tatt-tcattggtgtgaaggtt 4866548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 20357672 - 20357797
Alignment:
Q  36 ttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcataga 133  Q
    ||||||||| ||||| |||| ||||| ||||||||||||| |||| ||| ||  ||||||||| ||||||||| |||||||| |||||||  ||||||||    
T  20357672 ttatcttgtttgctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcataga 20357770  T
Q  134 ttatctctatcacttgctccacacatc 160  Q
    ||| | ||||| |||||||||||||||    
T  20357771 ttaccactatctcttgctccacacatc 20357797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 2057871 - 2057806
Alignment:
Q  94 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||||||  ||||||| |||||||||||| | ||||| |||||||||||||||    
T  2057871 ttttgttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc 2057806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 43988580 - 43988758
Alignment:
Q  35 tttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagat 134  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  43988580 tttatcttgtatgcttgttagctcttagtgtggttgtgctatacattaggcttaggctgttttgttgttgttagcttggaagccatttgctctcatagat 43988679  T
Q  135 tatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||    
T  43988680 tatctctatcacttgctccacacatcattgatttattctcattggcgtgaaggttcattagttgagccggattcacaac 43988758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 39445479 - 39445288
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  39445479 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 39445382  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaacgaaaa 218  Q
      | ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| || || || ||||||||||||| ||||    
T  39445381 ttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaaaaa 39445288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 25445195 - 25445381
Alignment:
Q  27 ttttatcgtttatcttgtat--gcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| |||||||||||| |  |||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  25445195 ttttaccgtttatcttgtttacgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 25445292  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
      ||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||||||| || || || |||||||||||||    
T  25445293 ttctcattgattatcactatcgcttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaac 25445381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 44023997 - 44024140
Alignment:
Q  44 tatgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 142  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||  ||||| ||||||| |||    
T  44023997 tatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcacta 44024094  T
Q  143 tcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    ||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  44024095 tcagttgctccacacatcattggtttatt-tcattggtgtgaaggtt 44024140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 1055117 - 1055303
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||  ||||||| | ||||||    
T  1055117 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtaagcttggaagacatttg 1055214  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
      | ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||  | || || |||||||||||||    
T  1055215 ttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgattgtagaaccggattcacaac 1055303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 41386650 - 41386566
Alignment:
Q  104 gtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 41386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 41398147 - 41398055
Alignment:
Q  96 ttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||||||||||||||| |||| ||  ||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  41398147 ttgttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatt-tcattggtgtgaaggtt 41398055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 19344412 - 19344213
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttgg 113  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19344412 tttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgg 19344313  T
Q  114 aggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaagg-ttcattagttgagccggattcacaa 212  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||| ||||||||||||    
T  19344312 aggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaa 19344214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 19349270 - 19349071
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttgg 113  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19349270 tttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgg 19349171  T
Q  114 aggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaagg-ttcattagttgagccggattcacaa 212  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||| ||||||||||||    
T  19349170 aggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaa 19349072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 213
Target Start/End: Complemental strand, 32246728 - 32246578
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    |||||||||||||||||| ||| ||  | |||||||||||||||| |||||||| |||||||  ||||||||||| | ||||||||||||||||||||||    
T  32246728 gtgtggttttgctatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatca 32246629  T
Q  162 ttggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    |||||||||| ||||||||| |||||||  || || || |||||||||||||    
T  32246628 ttggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaac 32246578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 39812129 - 39812255
Alignment:
Q  62 gtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  39812129 gtgtggttttgctatacactag-cttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 39812227  T
Q  161 attggtttattctcattggtgcgaaggtt 189  Q
     |||||||||| ||||||||| |||||||    
T  39812228 tttggtttatt-tcattggtgtgaaggtt 39812255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 44312759 - 44312887
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| | | ||  ||| | ||||||||||||||||||||| |||||||  ||||| ||||| | ||||||||||||||||    
T  44312759 ctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccac 44312858  T
Q  156 acatcattggtttattctcattggtgcgaag 186  Q
    |||||||| ||||||| ||||||||| ||||    
T  44312859 acatcatt-gtttatt-tcattggtgtgaag 44312887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 9296540 - 9296651
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctg-ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcact 147  Q
    |||||| ||||| ||||||||||||| |||| ||||||  ||||| |||||||||||||||||||||  ||||||   ||||||||||| | ||| |  |    
T  9296540 ttgttatctctttgtgtggttttgctctacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttt 9296638  T
Q  148 tgctccacacatc 160  Q
    |||||||||||||    
T  9296639 tgctccacacatc 9296651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 14291446 - 14291380
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctg-ttttgttgttgtttgcttgga 114  Q
    |||||| ||||| ||||||||||||| |||||||| ||  ||||| |||||||||||||||||||||    
T  14291446 ttgttatctctttgtgtggttttgctctacattagtctagggctgtttttgttgttgtttgcttgga 14291380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 18855706 - 18855520
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  18855706 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 18855609  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
      ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||  | || || |||||||||||||    
T  18855608 ttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgcttgtagaaccggattcacaac 18855520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 3813986 - 3813817
Alignment:
Q  44 tatgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 142  Q
    ||||||||||||||||| |||||||||| || ||||| ||| ||  | ||||||||||||||||||||||||| |||||||| ||||| ||||| | |||    
T  3813986 tatgcttgttagctctttgtgtggtttttgcgatacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccacta 3813887  T
Q  143 tcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||  || || || |||||||||||||    
T  3813886 tcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaac 3813817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 9224542 - 9224697
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  9224542 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 9224641  T
Q  156 acatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    |||||||| ||||||| ||||||||| |||||||  ||  |||| |||||||||||||    
T  9224642 acatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaac 9224697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 5732640 - 5732481
Alignment:
Q  28 tttatcgtttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||      
T  5732640 tttaccgtttatcttgtttgctttgttagctctttgtgtggttttactatacactag-cttagggctgttttgttgttgttagcttggagaccatttgtt 5732542  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    ||||| ||||| | | |||||||||||||||||||||||   |||| ||||||||| |||||||    
T  5732541 ctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtt 5732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 9229329 - 9229460
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  9229329 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 9229428  T
Q  156 acatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||| ||||||| ||||||||| |||||||    
T  9229429 acatcatt-gtttatt-tcattggtgtgaaggtt 9229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 45347959 - 45348108
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    ||||||||||||| |||| ||| ||  | |||||||||||||||| ||||| || |||||||  ||||||||||| | ||||||||||||||||||||||    
T  45347959 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatca 45348058  T
Q  162 ttggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    || ||||||| ||||||||| |||||||  || || || |||||||||||||    
T  45348059 tt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaac 45348108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 45357438 - 45357587
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    ||||||||||||| |||| ||| ||  | |||||||||||||||| ||||| || |||||||  ||||||||||| | ||||||||||||||||||||||    
T  45357438 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatca 45357537  T
Q  162 ttggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    || ||||||| ||||||||| |||||||  || || || |||||||||||||    
T  45357538 tt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaac 45357587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 51520413 - 51520283
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| || ||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  51520413 ttgttatctctttgtatggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 51520314  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    ||||||||||||||| ||||||| |||||||||    
T  51520313 gctccacacatcatt-gtttatt-tcattggtg 51520283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 56146840 - 56146970
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  56146840 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 56146939  T
Q  149 gctccacacatcattggtttattctcattggtg 181  Q
    ||||||||||||||| ||||||| |||||||||    
T  56146940 gctccacacatcatt-gtttatt-tcattggtg 56146970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 342 - 156
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  342 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 245  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
      ||||| ||||||| | ||||||||||||||||||| |||||||||| ||||||||| |||||||| || || || |||||||||||||    
T  244 ttctcattgattatcaccatcacttgctccacacatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaac 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 9764 - 9907
Alignment:
Q  44 tatgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 142  Q
    ||||||||||||||||| |||||||||||||||| | ||| |||||| |||||||||||||||||| |||||| |||||||| ||||| ||||||| |||    
T  9764 tatgcttgttagctctt-gtgtggttttgctatatactag-cttagggctgttttgttgttgtttggttggagaccatttgctctcattgattatcacta 9861  T
Q  143 tcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  9862 tcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 9907  T

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Target: scaffold0355; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 13 - 148
Alignment:
Q  44 tatgcttgttagctcttagtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 142  Q
    |||||||||||||||   |||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||| |||||||| ||||| |||      ||    
T  13 tatgcttgttagctc---gtgtggttttgctatacactag-cttagggctgttttgttgttgtttacttggagaccatttgctctcattgat------ta 102  T
Q  143 tcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||||    
T  103 tcacttgctccacacatcattggtttatt-taattggtgtgaaggtt 148  T

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Target: scaffold0135 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 35197 - 35328
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  35197 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 35296  T
Q  156 acatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||| ||||||| ||||||||| |||||||    
T  35297 acatcatt-gtttatt-tcattggtgtgaaggtt 35328  T

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Target: scaffold0127 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 34132 - 34216
Alignment:
Q  104 gtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggtt 189  Q
    |||||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 34216  T

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Target: scaffold0777 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 6341 - 6294
Alignment:
Q  166 tttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  6341 tttattctcattggtgtgaaggttcattagttgagccggattcacaac 6294  T

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Target: scaffold0479 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 13228 - 13142
Alignment:
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgcgaaggttcattagttgagccggattcacaac 213  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||| ||||||||| |||||||| || || || |||||||||||||    
T  13228 ctcattgattatcactatcacttgctccacatatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaac 13142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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