View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_232 (Length: 250)
Name: NF6876A_low_232
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_232 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 28529744 - 28529534
Alignment:
| Q |
36 |
tagatattgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtttctgtcattctccagtcgata |
135 |
Q |
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| T |
28529744 |
tagatattgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtttctgtcattctccagtcaata |
28529645 |
T |
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| Q |
136 |
gcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaat--ttacaacnnnnnnnggtagcaggagagtactggcattttcatattgaa |
233 |
Q |
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| T |
28529644 |
gcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattataacaacaaaagaaagtagcaggagagtactggcattttcatattgaa |
28529545 |
T |
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| Q |
234 |
atattcttcga |
244 |
Q |
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| T |
28529544 |
atatttttcga |
28529534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 27926707 - 27926778
Alignment:
| Q |
43 |
tgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtt |
114 |
Q |
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| T |
27926707 |
tgagaaattacctggagaagaatgttcaagagatacacaatatcagttatgcttctaagtacaacaagtgtt |
27926778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 28056486 - 28056415
Alignment:
| Q |
43 |
tgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtt |
114 |
Q |
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| T |
28056486 |
tgagaaattacctggagaagaatgttcaagagatacacaacatcagttatgcttctaagtataactagtgtt |
28056415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 28087123 - 28087056
Alignment:
| Q |
47 |
aaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtt |
114 |
Q |
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| T |
28087123 |
aaattacctggagaagaatgttcaagagatacacaacatcggttatgcttctaagtacaacaagtgtt |
28087056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 1435790 - 1435719
Alignment:
| Q |
43 |
tgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaagtgtt |
114 |
Q |
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| T |
1435790 |
tgagaaattacctgaagaagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgtt |
1435719 |
T |
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