View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_24 (Length: 437)
Name: NF6876A_low_24
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_24 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 50494676 - 50494417
Alignment:
| Q |
21 |
caagttgcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50494676 |
caagttgcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttca |
50494577 |
T |
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| Q |
121 |
agaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatcg |
220 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50494576 |
agaaagtatctcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaacaattcttcacaatttgctttatatatca |
50494477 |
T |
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| Q |
221 |
aatcgtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagt |
281 |
Q |
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| T |
50494476 |
aatcgtccacacacagaccgacaattgaaatcttt-cttcaacgtgtttcacaaatatagt |
50494417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 50493676 - 50493590
Alignment:
| Q |
275 |
atatagtatgctcatgatgacatttttcaaagttttcttgacagaaataaacttaaatcgtactataccatgctcttgatgtttgtt |
361 |
Q |
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| T |
50493676 |
atatagtatgctcatgatgacatttttcaaagttctcttgacagaaataaacttaaatcttactataccatgctcttggtgtttgtt |
50493590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 42971319 - 42971054
Alignment:
| Q |
25 |
ttgcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttcaagaa |
124 |
Q |
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| T |
42971319 |
ttgcattcttccataccaaatatggacaagatttctcttgcatatttctgctgatgaataaaaattccattggcatcttgagttacttctaatccaagaa |
42971220 |
T |
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| Q |
125 |
agtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatcgaatc |
224 |
Q |
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||| |||| ||||| ||||| ||||| |||| | |||||||| ||| |||| |||||||||| |||||| ||| | || |||||||| ||| |
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| T |
42971219 |
ggtacctcatcttccccaaatcagtcatgtcaaaatgtttcttcatagagtctataaaaccttcaaataactcttcataatatcctgtatatatcagatc |
42971120 |
T |
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| Q |
225 |
gtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatg |
290 |
Q |
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|| ||| ||||| ||||||||| |||||||||| ||||||||||||| | |||||||||||| |
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| T |
42971119 |
atctacatacagactcacaatcaaacactttccttcagcatgtttcacaaacaaagtatgctcatg |
42971054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 392
Target Start/End: Original strand, 10781721 - 10781991
Alignment:
| Q |
122 |
gaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatcga |
221 |
Q |
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||||||| |||| ||||| || |||| ||||||||| ||||||||||||||||| | ||||||||||| || |||||||||||| | | | ||| | |
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| T |
10781721 |
gaaagtacctcatcttccccaagtctgacatagcaaaattcttcttcatggagcatttgaaatcttcaaagaactcttcacaatttccagtgaagatcaa |
10781820 |
T |
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| Q |
222 |
atcgtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaaa |
321 |
Q |
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| T |
10781821 |
gtcatctacatatagactgacaatcaatattttcccttcagtatgcttcacaaatagtgtatgctcatgtggacacttttcaaacttttgttgacagaag |
10781920 |
T |
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| Q |
322 |
taaacttaaatcgtactataccatgctcttgatgtttgtttcaagtcatataaagcttttctcagcttgta |
392 |
Q |
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| T |
10781921 |
taagcttcaattttactataccaagctcttggagcttgctttaaaccatataaagcttttttcaacttgta |
10781991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 40610527 - 40610586
Alignment:
| Q |
107 |
ttacttcaacttcaagaaagtatttcattttcccaaaatctgtcatagcaaagttcttct |
166 |
Q |
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||||||| ||||||||||||||| ||||||| || ||||||||||||||||| ||||||| |
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| T |
40610527 |
ttacttctacttcaagaaagtatctcatttttcccaaatctgtcatagcaaaattcttct |
40610586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 7849802 - 7849894
Alignment:
| Q |
258 |
ttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaaataaacttaaatcgtactataccatgctct |
350 |
Q |
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| T |
7849802 |
ttcaacatgctttacaaacagagtatgttcatgagggcatttttcaaaattttctttgcagaaataagcttctattttactataccaggctct |
7849894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 59240 - 59302
Alignment:
| Q |
258 |
ttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaa |
320 |
Q |
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||||| |||||| ||||||| ||||||||||||| ||||||| ||||||||||||||| |||| |
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| T |
59240 |
ttcaatatgttttacaaatagagtatgctcatgaggacatttatcaaagttttcttgatagaa |
59302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 59127 - 59176
Alignment:
| Q |
145 |
tctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataa |
194 |
Q |
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| T |
59127 |
tctgtcatagcaaaattcttcttcatagagcatttaaactcttcaaataa |
59176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 374
Target Start/End: Original strand, 46431407 - 46431662
Alignment:
| Q |
119 |
caagaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatat |
218 |
Q |
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||||||||||| ||||||| || ||||| ||||| ||||||| |||||||| || |||| || || |||| |||| ||||||||||| | ||||||| |
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| T |
46431407 |
caagaaagtatctcatttttcccaaatcagtcatgacaaagtttttcttcatagaacacttgaagtcatcaattaatacttcacaatttccagtatatat |
46431506 |
T |
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| Q |
219 |
cgaatcgtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacag |
318 |
Q |
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| T |
46431507 |
cagatcatccacatacaaactaacaattaagatcttgttttcagcatgctttacaaataaagtatgttaatgagggcatttctcaaaattctctttgcag |
46431606 |
T |
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| Q |
319 |
aaataaacttaaatcgtactataccatgctcttgatgtttgtttcaagtcatataa |
374 |
Q |
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|| ||| ||| || |||||||||||||||||| || |||||||| ||||||| |
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| T |
46431607 |
aagtaagcttctattttactataccatgctcttggtgcctgtttcaatccatataa |
46431662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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