View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_243 (Length: 249)
Name: NF6876A_low_243
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_243 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 41957823 - 41957931
Alignment:
| Q |
135 |
ctatctggttagttaacgcaactctcattcagaaataaaatttaatctaaagtggcaaaatggaataatattcaacattaacttatcatatcctgatgtc |
234 |
Q |
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| T |
41957823 |
ctatctggttagttaacagagctctcattcagaaataaaatttaaactaaagtggcaaaatggaataatattcaacattaacttatcatatcctgatgtc |
41957922 |
T |
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| Q |
235 |
catctcatt |
243 |
Q |
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||||||| |
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| T |
41957923 |
tgtctcatt |
41957931 |
T |
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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 41957715 - 41957756
Alignment:
| Q |
29 |
tcaaaatcacgttatggttcttaaaaaagaatgatggatatg |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
41957715 |
tcaaaatcacgttatggttcttaaaaaagaatgatggatatg |
41957756 |
T |
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