View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_244 (Length: 249)
Name: NF6876A_low_244
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_244 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 14444752 - 14444521
Alignment:
| Q |
14 |
tggacatcatctttagactttagacaatttcacaagtcatctttaacaatatgaagatgattgcaatgcctaccaactaaatacaatagtagttttgtgg |
113 |
Q |
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| T |
14444752 |
tggacaacatctttagacgttagacaatttcacaagtcatctttaacaatatgaagatgattacaatgccaaccaactaaatacaatagtagttttgtgg |
14444653 |
T |
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| Q |
114 |
tcttgatatgattatgatcaatttgatctcacattgacctttctatctctttctatgttcaatacgatcacacttggtgaatctgattttttaaaatgca |
213 |
Q |
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| T |
14444652 |
tcttgatatgattatgatcaatttgatctcacattgacctttctatctctttctatgttcaatatgatcacacttgatgaatctgattttttaaaatgca |
14444553 |
T |
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| Q |
214 |
cttaaaaggatctgccaaagatataatgtagg |
245 |
Q |
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| T |
14444552 |
cttaaaaggatctgccaaagatataatgtagg |
14444521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 3274045 - 3273925
Alignment:
| Q |
23 |
tctttagactttagacaatttcacaagtcatctttaacaatatgaagatgattgcaatgcctaccaactaaatacaatagtagttttgtggtcttgatat |
122 |
Q |
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| T |
3274045 |
tcttcagactttagacaatctcataattcatatttaacaatctaaagatgattgtgatgcatatc-actaattacaatagtag-tttgtgatcttgatct |
3273948 |
T |
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| Q |
123 |
gattatgatcaatttgatctcaca |
146 |
Q |
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| T |
3273947 |
-attctgatcaatttgatctcaca |
3273925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 23886266 - 23886326
Alignment:
| Q |
93 |
aatacaatagtagttttgtggtcttgatatgattatgatcaatttgatctcacattgacct |
153 |
Q |
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| T |
23886266 |
aatacaatagttgttttgtaatcttaagatgattttgatcaatttgatctcacaatgacct |
23886326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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