View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_247 (Length: 249)
Name: NF6876A_low_247
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_247 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 12527694 - 12527859
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
12527694 |
tggacatctgttcaaaatataaactgcagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatacatctcaccatatccatg |
12527793 |
T |
|
| Q |
115 |
attgttctgttctttcttttagctactccattttgttgaggagtatatcttgttattaattgatgt |
180 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
12527794 |
attgttctgttcttcctttcagctactccattttgttgaggagtatatcttgttgtcaattgatgt |
12527859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 35843328 - 35843163
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |
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| T |
35843328 |
tggacatctgttcaaaatataaactgcagtagcaactgcttctgcccaaaattcctttgccatttgtttggctttcagcatacatctcaccatatccatg |
35843229 |
T |
|
| Q |
115 |
attgttctgttctttcttttagctactccattttgttgaggagtatatcttgttattaattgatgt |
180 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
35843228 |
attgttctgttcttcctttcagctactccattttgttgaggagtatatcttgttgtcaattgatgt |
35843163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 12644917 - 12644845
Alignment:
| Q |
61 |
caaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccataattgttctgttctttcttt |
133 |
Q |
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|
||||||| | ||||||||||||| ||||||| | | | |||||||||||||| | |||| |||||||||||| |
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|
| T |
12644917 |
caaaatttcgttggcatttgtttagctttcaacgtacatctcaccatatccaagactgttttgttctttcttt |
12644845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 27728907 - 27729072
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
27728907 |
tggacatctgttcaaaatataaactgcagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatacatctcaccatatccatg |
27729006 |
T |
|
| Q |
115 |
attgttctgttctttcttttagctactccattttgttgaggagtatatcttgttattaattgatgt |
180 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
27729007 |
attgttctgttcttcctttcagctactccattttgttgaggagtatatcttgttgtcaattgatgt |
27729072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 45967615 - 45967450
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
45967615 |
tggacatctgttcaaaatataaactgcagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatacatctcaccatatccatg |
45967516 |
T |
|
| Q |
115 |
attgttctgttctttcttttagctactccattttgttgaggagtatatcttgttattaattgatgt |
180 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
45967515 |
attgttctgttcttcctttcagctactccattttgttgaggagtatatcttgttgtcaattgatgt |
45967450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 24148338 - 24148188
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
24148338 |
tggacatctattcaaaatataaacagcaatagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcattcatctcaccatatccatg |
24148239 |
T |
|
| Q |
115 |
attgttctgttctttctttt-agctactccattttgttgaggagtatatct |
164 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
24148238 |
attgttttgttcttccttttcagctactccattttgttgaggagtgtatct |
24148188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 18769788 - 18769842
Alignment:
| Q |
185 |
ctcacaactcacaaccctaacaaaagaataggaatctactatcaaaaactccatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
18769788 |
ctcacaactcacaaccctaacaaaagaataggaatctactatcaaaaacttcatg |
18769842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 42302201 - 42302036
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42302201 |
tggacatctgttcaaaatataaactgcagtagcaactgcttctacccaaaattcctttggcatttgtttggctttcagcatgcatctcaccatatccata |
42302102 |
T |
|
| Q |
115 |
attgttctgttctttcttttagctactccattttgttgaggagtatatcttgttattaattgatgt |
180 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||| |
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|
| T |
42302101 |
actgttctgttctttctttcagctactccattttgttgaggagtatatctttttgtcaattgatgt |
42302036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 42911807 - 42911972
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
42911807 |
tggacatctgttcaaaatataaactgcagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatacatctcaccatatccatg |
42911906 |
T |
|
| Q |
115 |
attgttctgttctttcttttagctactccattttgttgaggagtatatcttgttattaattgatgt |
180 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
42911907 |
attgttctgttcttcctttcagctactccattttgttgaggagtatatcttgttgtcaattgatgt |
42911972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 29280948 - 29281113
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
29280948 |
tggacatctgttcaaaatataaactgcagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatacatctcaccatatccatg |
29281047 |
T |
|
| Q |
115 |
attgttctgttctttcttttagctactccattttgttgaggagtatatcttgttattaattgatgt |
180 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
29281048 |
attgttctgttcttcctttcagctactccattttgttgaggagtatatcttgttgtcaattgatgt |
29281113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 29305348 - 29305183
Alignment:
| Q |
15 |
tggacatctgttcaaaatataaactacagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatgcttctcaccatatccata |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
29305348 |
tggacatctgttcaaaatataaactgcagtagcaactgcttctgcccaaaattcctttggcatttgtttggctttcagcatacatctcaccatatccatg |
29305249 |
T |
|
| Q |
115 |
attgttctgttctttcttttagctactccattttgttgaggagtatatcttgttattaattgatgt |
180 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
29305248 |
attgttttgttcttcctttcagctactccattttgttgaggagtatatcttgttgtcaattgatgt |
29305183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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