View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_248 (Length: 249)
Name: NF6876A_low_248
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_248 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 46703805 - 46703566
Alignment:
| Q |
4 |
aagaacaaaaagttagatcaaaacatgaaaaggacgatgaaagtgcataggaaagacccgattgatctagtttcttctggttcagaacatgtaaaggaag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46703805 |
aagaacaaaaagttagatcaaaacatgaaaaggacgatgaaagtgcataggaaagacccaattgatctagtttcttctggttcagaacatgtaaaggaag |
46703706 |
T |
|
| Q |
104 |
acgacagagctgatttctgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccattatta |
203 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46703705 |
aggaaagagctgatttttgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccattatta |
46703606 |
T |
|
| Q |
204 |
tatgttagtttttaactttcttcattagcctaacaccaaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46703605 |
tatgttagtttttaactttcttcattagcctaacaccaaa |
46703566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 46685771 - 46685543
Alignment:
| Q |
14 |
agttagatcaaaacatgaaaaggacgatgaaagtgcataggaaagacccgattgatctagtttcttctggttcagaacatgtaaaggaagacgacagagc |
113 |
Q |
| |
|
||||| |||||||||||| |||||| |||| || || ||||| |||||||||| | ||||||||||||| | |||| ||||||||| || | || |
|
|
| T |
46685771 |
agttaaatcaaaacatgagaaggacaatgatagcgctggggaaacgtccgattgatccatcttcttctggttcaaatcatgaaaaggaagaggaaaatgc |
46685672 |
T |
|
| Q |
114 |
tgatttctgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccattattatatgttagtt |
213 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||||| |||| ||||| |||||||| ||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
46685671 |
agatttatgtcagagtatcccacaaaggaaaaggaaagt--agtttttgattgtcgattccactgcttgataatctttattccattattatatgttagtt |
46685574 |
T |
|
| Q |
214 |
tttaactttcttcattagcctaacaccaaac |
244 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
46685573 |
tttaactttcttcattaacctaacaccaaac |
46685543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 46677144 - 46677010
Alignment:
| Q |
115 |
gatttctgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccatta------ttatatgt |
208 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| || || ||||||||| | ||| |||||| ||||||||||| ||||| | |
|
|
| T |
46677144 |
gatttctgtcagagtacccccaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacct |
46677045 |
T |
|
| Q |
209 |
tagtttttaactttcttcattagcctaacaccaaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46677044 |
tagtttttaactttcttcattagcctaacaccaaa |
46677010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 21728321 - 21728216
Alignment:
| Q |
135 |
caaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccattattatatgttagtttttaactttcttcattagcct |
234 |
Q |
| |
|
|||||||||||| ||| |||||| ||||| || ||||| ||| || ||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
21728321 |
caaaaggaagagaaaatggtagttattgattattgattcttcttctttataatctttattccattattacatgttagtttttaactttcttcattggcct |
21728222 |
T |
|
| Q |
235 |
aacacc |
240 |
Q |
| |
|
|||||| |
|
|
| T |
21728221 |
aacacc |
21728216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University