View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_254 (Length: 248)
Name: NF6876A_low_254
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_254 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 37673284 - 37673050
Alignment:
| Q |
14 |
atggacatcaatacaaaaacatgttctggaaaacatgatacaagtatgactctccgctcaaaaaattattatacttttgtggagagtaggaaagacatga |
113 |
Q |
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| T |
37673284 |
atggtcatcaatacaaaaacatgttctggaaaacatgatacaagtatgactctccactcaaaaaattattatacttttgtggagagtaggaaagacatga |
37673185 |
T |
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| Q |
114 |
atgagaaaaaaccagtcacttgtattgctaacaacattgctaaatctgaggggatagtacaacctccattcttgagcattggttctaatgtctctgtcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
37673184 |
atgagaaaaaaccagtcacttgtattgctaacaacattgctaaatctgaggggatagtgcaacctccattctctagcgttggttctaatgtctctgtcaa |
37673085 |
T |
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| Q |
214 |
gtccgttttaaggaagatgactgaagacccaaagg |
248 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37673084 |
gtccgttttaaggaagatgactgaagacccaaagg |
37673050 |
T |
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