View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_256 (Length: 248)

Name: NF6876A_low_256
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_256
NF6876A_low_256
[»] chr7 (10 HSPs)
chr7 (12-248)||(4828995-4829231)
chr7 (180-246)||(24596843-24596909)
chr7 (204-245)||(29544730-29544771)
chr7 (204-244)||(20017164-20017204)
chr7 (205-244)||(7815534-7815573)
chr7 (206-247)||(21545692-21545733)
chr7 (204-244)||(315384-315424)
chr7 (168-244)||(18496776-18496852)
chr7 (204-244)||(22067666-22067706)
chr7 (204-241)||(23125115-23125152)
[»] chr5 (10 HSPs)
chr5 (168-245)||(19763713-19763790)
chr5 (204-241)||(26329933-26329970)
chr5 (205-245)||(16622541-16622581)
chr5 (201-244)||(18872912-18872955)
chr5 (182-247)||(22643746-22643811)
chr5 (201-245)||(7742730-7742774)
chr5 (204-244)||(17027738-17027778)
chr5 (206-238)||(18452677-18452709)
chr5 (206-246)||(19331719-19331759)
chr5 (205-241)||(30072330-30072366)
[»] chr3 (10 HSPs)
chr3 (167-247)||(18474378-18474458)
chr3 (167-247)||(19542950-19543030)
chr3 (204-244)||(25883314-25883354)
chr3 (201-245)||(19219071-19219115)
chr3 (200-247)||(5632402-5632449)
chr3 (206-241)||(19263769-19263804)
chr3 (204-245)||(18066007-18066048)
chr3 (204-244)||(1475143-1475183)
chr3 (203-247)||(8402413-8402457)
chr3 (204-244)||(11521376-11521416)
[»] scaffold0337 (1 HSPs)
scaffold0337 (165-243)||(2020-2098)
[»] scaffold0065 (1 HSPs)
scaffold0065 (165-243)||(12456-12534)
[»] scaffold0011 (1 HSPs)
scaffold0011 (201-247)||(228047-228093)
[»] chr8 (15 HSPs)
chr8 (121-247)||(30543970-30544095)
chr8 (202-246)||(11437629-11437673)
chr8 (180-238)||(12357696-12357754)
chr8 (180-238)||(12358824-12358882)
chr8 (204-245)||(16052140-16052181)
chr8 (200-245)||(22894391-22894436)
chr8 (204-244)||(16054505-16054545)
chr8 (208-243)||(28901217-28901252)
chr8 (200-247)||(31436678-31436724)
chr8 (206-244)||(13081800-13081838)
chr8 (200-245)||(27097661-27097706)
chr8 (200-241)||(32239502-32239543)
chr8 (201-245)||(28291961-28292005)
chr8 (204-244)||(28902300-28902340)
chr8 (201-245)||(30850960-30851004)
[»] chr1 (16 HSPs)
chr1 (201-246)||(23505965-23506010)
chr1 (182-247)||(26854161-26854226)
chr1 (200-247)||(52271104-52271151)
chr1 (204-245)||(11769857-11769898)
chr1 (200-245)||(19257665-19257710)
chr1 (204-245)||(23223624-23223665)
chr1 (200-245)||(25126690-25126735)
chr1 (204-245)||(26657686-26657727)
chr1 (204-245)||(30675694-30675735)
chr1 (204-244)||(12423778-12423818)
chr1 (209-245)||(25494357-25494393)
chr1 (204-244)||(30781971-30782011)
chr1 (167-246)||(21548857-21548936)
chr1 (200-247)||(25665629-25665676)
chr1 (204-244)||(23519632-23519672)
chr1 (204-244)||(50047386-50047426)
[»] chr4 (12 HSPs)
chr4 (200-247)||(31859760-31859807)
chr4 (181-242)||(21077446-21077507)
chr4 (200-241)||(23353832-23353873)
chr4 (201-248)||(17187380-17187427)
chr4 (204-245)||(17026560-17026601)
chr4 (204-244)||(1695710-1695750)
chr4 (204-244)||(15192414-15192454)
chr4 (200-242)||(29437674-29437716)
chr4 (204-245)||(18898192-18898233)
chr4 (200-245)||(33519240-33519285)
chr4 (201-245)||(19602008-19602052)
chr4 (204-244)||(51884813-51884853)
[»] chr6 (6 HSPs)
chr6 (165-243)||(24507267-24507345)
chr6 (204-244)||(15575135-15575175)
chr6 (204-245)||(17860312-17860353)
chr6 (200-245)||(26499706-26499751)
chr6 (204-240)||(15998725-15998761)
chr6 (205-245)||(30355527-30355567)
[»] chr2 (10 HSPs)
chr2 (200-246)||(34063700-34063746)
chr2 (200-245)||(27417122-27417167)
chr2 (204-244)||(16593614-16593654)
chr2 (168-244)||(18236130-18236206)
chr2 (201-245)||(18818912-18818956)
chr2 (205-248)||(17415028-17415071)
chr2 (200-247)||(22525679-22525726)
chr2 (205-244)||(30998982-30999021)
chr2 (200-245)||(24188179-24188224)
chr2 (204-244)||(25474248-25474288)
[»] scaffold0190 (1 HSPs)
scaffold0190 (207-247)||(11564-11604)
[»] scaffold1149 (1 HSPs)
scaffold1149 (202-245)||(1997-2040)
[»] scaffold0188 (1 HSPs)
scaffold0188 (205-244)||(26819-26858)
[»] scaffold0836 (1 HSPs)
scaffold0836 (200-246)||(2817-2863)
[»] scaffold0282 (1 HSPs)
scaffold0282 (204-241)||(22477-22514)
[»] scaffold0185 (1 HSPs)
scaffold0185 (201-246)||(2709-2754)
[»] scaffold0043 (1 HSPs)
scaffold0043 (166-247)||(58958-59038)
[»] scaffold0362 (1 HSPs)
scaffold0362 (204-244)||(7830-7870)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 4829231 - 4828995
Alignment:
Q  12 atggacatcaaggccgtgtccatacgtgaggcacatggtttggtgcgtaggggcacgtggggaagtaggcaatattatcccatgtgaagggtgtgtggct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  4829231 atggacatcaaggccgtgtccatacgtgaggcacatggtttggtgcgtaggggcacatggggaagtagacaatattatcccatgtgaagggtgggtggct 4829132  T
Q  112 ttatccgcaggggctcatgaggcactcccctcatgtgcgattttagcagcttacgaccctttttcggccattctttcatcttttaatcccttggaacttg 211  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4829131 ttatccgcagaggctcatgaggcactcccctcatgtgcgatttcagcagcttacgaccctttttcggccgttctttcatcttttaatcccttggaacttg 4829032  T
Q  212 aaatgaattatcttcactttgtattgtcttcaaataa 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  4829031 aaatgaattatcttcactttgtattgtcttcaaataa 4828995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 24596843 - 24596909
Alignment:
Q  180 cattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaat 246  Q
    ||||||||| ||||  ||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  24596843 cattctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaat 24596909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 29544771 - 29544730
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  29544771 ggaacttgaaatgaattttcttcactttgtattgtcttcaaa 29544730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 20017204 - 20017164
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  20017204 ggaacttgaaatgaattttcttcactttgtattgtcttcaa 20017164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 7815573 - 7815534
Alignment:
Q  205 gaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  7815573 gaacttgaaatgaattttcttcactttgtattgtcttcaa 7815534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 21545692 - 21545733
Alignment:
Q  206 aacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  21545692 aacttgaaatgaattttcttcactttttattgtcttcaaata 21545733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 315424 - 315384
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  315424 ggaacttgaaatgaattttattcactttgtattgtcttcaa 315384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 18496852 - 18496776
Alignment:
Q  168 ccctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||| || ||||| | ||||  ||| ||||||||||||||||||||| ||||||  ||||||| |||||||    
T  18496852 ccctttttcgaccgttcttacgtcttgaaatgccttggaacttgaaatgaattttcttcatcttgtattttcttcaa 18496776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 22067666 - 22067706
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  22067666 ggaacttgaaatgaattcttttcactttgtattgtcttcaa 22067706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 23125152 - 23125115
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtctt 241  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  23125152 ggaatttgaaatgaattttcttcactttgtattgtctt 23125115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 19763713 - 19763790
Alignment:
Q  168 ccctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||  | ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  19763713 ccctttttcgagcgttcttccatctttcaatcctttggaacttgaaatgaattttcttcactttgtattatcttcaaa 19763790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 26329933 - 26329970
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtctt 241  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  26329933 ggaacttgaaatgaattttcttcactttgtattgtctt 26329970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 16622541 - 16622581
Alignment:
Q  205 gaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  16622541 gaacttgaaatgaattttcttcaatttgtattgtcttcaaa 16622581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 18872912 - 18872955
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||    
T  18872912 cttggaacttcaaatgaattttcttcaatttgtattgtcttcaa 18872955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 22643746 - 22643811
Alignment:
Q  182 ttctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    ||||||| ||||  ||| |||||||  |||||||||||| |||||| |||||||||| ||||||||    
T  22643746 ttctttcgtcttgcaataccttggagtttgaaatgaattttcttcagtttgtattgtattcaaata 22643811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 7742730 - 7742774
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||| ||||||||| || || ||||||||||||||||||||||||    
T  7742730 cttgaaacttgaaacgatttttcttcactttgtattgtcttcaaa 7742774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 17027778 - 17027738
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||| ||||||| |||| |||||||||||||||||||||||    
T  17027778 ggaaattgaaattaattttcttcactttgtattgtcttcaa 17027738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 18452677 - 18452709
Alignment:
Q  206 aacttgaaatgaattatcttcactttgtattgt 238  Q
    ||||||||||||||| |||||||||||||||||    
T  18452677 aacttgaaatgaattttcttcactttgtattgt 18452709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 19331759 - 19331719
Alignment:
Q  206 aacttgaaatgaattatcttcactttgtattgtcttcaaat 246  Q
    ||||| |||||| |||||||||| |||||||||||||||||    
T  19331759 aacttcaaatgacttatcttcacattgtattgtcttcaaat 19331719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 30072366 - 30072330
Alignment:
Q  205 gaacttgaaatgaattatcttcactttgtattgtctt 241  Q
    |||||||||||||| | ||||||||||||||||||||    
T  30072366 gaacttgaaatgaaatttcttcactttgtattgtctt 30072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 18474458 - 18474378
Alignment:
Q  167 accctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||||||  | ||||||| ||||  ||| | ||||||||||||||||||| ||||||||||||||||||||||||||    
T  18474458 accctttttcgctcgttctttcgtcttgcaatgcattggaacttgaaatgaattttcttcactttgtattgtcttcaaata 18474378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 19542950 - 19543030
Alignment:
Q  167 accctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||||||  |  |||||| ||||  ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19542950 accctttttcgctctatctttcgtcttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttcaaata 19543030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 25883354 - 25883314
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  25883354 ggaacttgaaatgaattttcttcactttgtattgtcttcaa 25883314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 19219071 - 19219115
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||    
T  19219071 cttggaatttgaaatgaattttattcactttgtattgtcttcaaa 19219115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 5632402 - 5632449
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    ||||||||||||||||||||| |||||| ||| |||| ||||||||||    
T  5632402 ccttggaacttgaaatgaattttcttcaatttttattatcttcaaata 5632449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 19263769 - 19263804
Alignment:
Q  206 aacttgaaatgaattatcttcactttgtattgtctt 241  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19263769 aacttgaaatgaattttcttcactttgtattgtctt 19263804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 18066048 - 18066007
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  18066048 ggaagttgaaatgaattttcttcactttgtattttcttcaaa 18066007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 1475143 - 1475183
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
T  1475143 ggaacttgaaataaattttcttcactttgtattatcttcaa 1475183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 8402413 - 8402457
Alignment:
Q  203 tggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||||||||||||  |||||||||| |||| ||||||||||    
T  8402413 tggaacttgaaatgaatgttcttcactttatattttcttcaaata 8402457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 11521416 - 11521376
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| ||||| ||||||||| |||||||    
T  11521416 ggaacttgaaatgaattttcttcgctttgtattatcttcaa 11521376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 2098 - 2020
Alignment:
Q  165 cgaccctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttca 243  Q
    |||||||||||||||| ||||| |||||| | |  |||||||||||||||| |||| ||||||||||||||| ||||||    
T  2098 cgaccctttttcggcccttcttccatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttca 2020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 12534 - 12456
Alignment:
Q  165 cgaccctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttca 243  Q
    |||||||||||||||| ||||| |||||| | |  |||||||||||||||| |||| ||||||||||||||| ||||||    
T  12534 cgaccctttttcggcccttcttccatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttca 12456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 228047 - 228093
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  228047 cttggaacttgaaatgaattttcttcactttgtattgtcttcaaata 228093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 247
Target Start/End: Complemental strand, 30544095 - 30543970
Alignment:
Q  121 ggggctcatgaggcactcccctcatgtgcgattttagcagcttacgaccctttttcggccattctttcatcttttaatcccttggaacttgaaatgaatt 220  Q
    ||||| |||||||||  |||||||||  |||||| ||||| || ||||||||||||   ||||||| |  |||  ||| |||||||||||||||||||||    
T  30544095 ggggcacatgaggcaa-cccctcatgcacgatttcagcagttttcgaccctttttcactcattcttccgccttgcaatgccttggaacttgaaatgaatt 30543997  T
Q  221 atcttcactttgtattgtcttcaaata 247  Q
     |||||||||| ||||||||| |||||    
T  30543996 ttcttcactttatattgtctttaaata 30543970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 11437673 - 11437629
Alignment:
Q  202 ttggaacttgaaatgaattatcttcactttgtattgtcttcaaat 246  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||    
T  11437673 ttggaacttcaaatgaattatcttcactctgtattgtcttcaaat 11437629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 12357754 - 12357696
Alignment:
Q  180 cattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgt 238  Q
    ||||||||| |||| |||| |||||||| |||||||||||| |||||||||| ||||||    
T  12357754 cattctttcctcttataatgccttggaatttgaaatgaattttcttcactttttattgt 12357696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 12358882 - 12358824
Alignment:
Q  180 cattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgt 238  Q
    ||||||||| |||| |||| |||||||| |||||||||||| |||||||||| ||||||    
T  12358882 cattctttcctcttataatgccttggaatttgaaatgaattttcttcactttttattgt 12358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 16052140 - 16052181
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  16052140 ggaacttgaaatgaattttcttcattttgtattgtcttcaaa 16052181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 22894391 - 22894436
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  22894391 ccttggaacttcaaaagaattttcttcactttgtattgtcttcaaa 22894436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 16054545 - 16054505
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  16054545 ggaacttgaaatgaattttcttcactttgtattttcttcaa 16054505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 28901217 - 28901252
Alignment:
Q  208 cttgaaatgaattatcttcactttgtattgtcttca 243  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28901217 cttgaaatgaattttcttcactttgtattgtcttca 28901252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 31436724 - 31436678
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||    
T  31436724 ccttggaacttgaaat-aatttttttcactttgtattgtcttcaaata 31436678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 13081800 - 13081838
Alignment:
Q  206 aacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  13081800 aacttgaaatgaattttcttcattttgtattgtcttcaa 13081838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 27097661 - 27097706
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||||||||| |||||| ||||||  ||||||||||||||||    
T  27097661 ccttggaacttgaattgaattttcttcaacttgtattgtcttcaaa 27097706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 32239543 - 32239502
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtctt 241  Q
    ||||| ||||||||||||||| |||||||||| |||||||||    
T  32239543 ccttgaaacttgaaatgaattttcttcactttttattgtctt 32239502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 28291961 - 28292005
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||||||||||  ||| |||||| |||||||||||||||||    
T  28291961 cttggaacttgaaatttattttcttcattttgtattgtcttcaaa 28292005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 28902340 - 28902300
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||| ||||||||| | |||||||||||||||||||||    
T  28902340 ggaacttaaaatgaattttattcactttgtattgtcttcaa 28902300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 30850960 - 30851004
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||| |||| ||||||||||||||| | ||||||    
T  30850960 cttggaacttgaaattaattttcttcactttgtattatattcaaa 30851004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 23506010 - 23505965
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaat 246  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  23506010 cttggaacttgaaatgaattttcttcactttgtattgtcttcaaat 23505965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 26854161 - 26854226
Alignment:
Q  182 ttctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    ||||| ||||||  ||| ||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  26854161 ttcttccatcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaata 26854226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 52271104 - 52271151
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  52271104 ccttggaatttgaaatgaattttcttcactttgtattgtcttcaaata 52271151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 11769857 - 11769898
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  11769857 ggaacttgaaatgaattttcttcactttgtattgtcttcaaa 11769898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 19257665 - 19257710
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||    
T  19257665 ccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 19257710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 23223665 - 23223624
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  23223665 ggaacttgaaatgaatttttttcactttgtattgtcttcaaa 23223624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 25126735 - 25126690
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||    
T  25126735 ccttggaacttgaaatgaattttcttcattttgtattgtattcaaa 25126690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 26657727 - 26657686
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  26657727 ggaacttgaaatgaattttcttcactttgttttgtcttcaaa 26657686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 30675735 - 30675694
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  30675735 ggaacttgaaatgaattttcttcactttgtattatcttcaaa 30675694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 12423778 - 12423818
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  12423778 ggaacttgaaatgaatttccttcactttgtattgtcttcaa 12423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 25494357 - 25494393
Alignment:
Q  209 ttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||||||| ||||||||||||||||||||||||    
T  25494357 ttgaaatgaattttcttcactttgtattgtcttcaaa 25494393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 30782011 - 30781971
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  30782011 ggaacttgaaatcaattttcttcactttgtattgtcttcaa 30781971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 21548936 - 21548857
Alignment:
Q  167 accctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaat 246  Q
    ||||||||||   ||||||||| |||| |||| ||||||||||| ||||||||| | ||||  ||||||| |||||||||    
T  21548936 accctttttctagcattctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaacttgtattatcttcaaat 21548857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 25665629 - 25665676
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    ||||||||||| |||||| || |||||||||||||||||||| |||||    
T  25665629 ccttggaacttcaaatgatttttcttcactttgtattgtctttaaata 25665676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 23519632 - 23519672
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||||| |||| |||||||||| ||||||||||||    
T  23519632 ggaacttgaaataaattttcttcactttctattgtcttcaa 23519672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 50047426 - 50047386
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||| ||||||||| |||||| ||||||||||||||||    
T  50047426 ggaacttaaaatgaattttcttcattttgtattgtcttcaa 50047386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 31859760 - 31859807
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||    
T  31859760 ccttggaacttgaaataaattttcttcactttgtattgtcttcaaata 31859807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 21077507 - 21077446
Alignment:
Q  181 attctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttc 242  Q
    |||||| ||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||    
T  21077507 attcttccatctttcaatgccttggaacttgaaatgaattttattcaatttgtattgtcttc 21077446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 23353873 - 23353832
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtctt 241  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  23353873 ccttggaacttgaaatgaattttcttcactttgtattgtctt 23353832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 17187427 - 17187380
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaataa 248  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  17187427 cttgaaacttgaaatgaattttctttactttgtattgtcttcaaataa 17187380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 17026560 - 17026601
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  17026560 ggaacttgaaattaattttcttcactttgtattgtcttcaaa 17026601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 1695710 - 1695750
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  1695710 ggaacttgaaatgaattttattcactttgtattgtcttcaa 1695750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 15192454 - 15192414
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  15192454 ggaacttgaaatgaattgtcttcactttgaattgtcttcaa 15192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 29437716 - 29437674
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttc 242  Q
    ||||||||||| ||||||| | |||||||||||||||||||||    
T  29437716 ccttggaacttcaaatgaagtttcttcactttgtattgtcttc 29437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 18898233 - 18898192
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||| |||| |||||||||||| ||||||    
T  18898233 ggaacttgaaatgaattttctttactttgtattgtattcaaa 18898192  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 33519285 - 33519240
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||| |||||||||||| ||||||  ||||||||||||||||    
T  33519285 ccttggaatttgaaatgaattttcttcaacttgtattgtcttcaaa 33519240  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 19602052 - 19602008
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||| ||||||||||| ||| |||||| |||||||||||||    
T  19602052 cttggaacatgaaatgaattttctccactttttattgtcttcaaa 19602008  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 51884853 - 51884813
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||||| |||| ||||||||||||||||| |||||    
T  51884853 ggaacttgaaattaattttcttcactttgtattgtattcaa 51884813  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 24507267 - 24507345
Alignment:
Q  165 cgaccctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttca 243  Q
    |||||||||||||||| |||||  ||||| | |  |||||||||||||||| |||| ||||||||||||||| ||||||    
T  24507267 cgaccctttttcggcccttcttctatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttca 24507345  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 15575175 - 15575135
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  15575175 ggaacttgaaatgaattttcttcactttgtattgtcttcaa 15575135  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 17860312 - 17860353
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  17860312 ggaacttgaaatgaattttcttcactttgtattgtctacaaa 17860353  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 26499706 - 26499751
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||    
T  26499706 ccttgaaacttgaaatgaattttctttactttgtattgtcttcaaa 26499751  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 15998761 - 15998725
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtct 240  Q
    |||||||||||||||||  ||||||||||||||||||    
T  15998761 ggaacttgaaatgaatttgcttcactttgtattgtct 15998725  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 30355567 - 30355527
Alignment:
Q  205 gaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||||||||||||| | |||||||| |||||||||||||    
T  30355567 gaacttgaaatgaattttattcactttttattgtcttcaaa 30355527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 34063700 - 34063746
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaat 246  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  34063700 ccttggaacttcaaatgaattttcttcactttgtattgtcttcaaat 34063746  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 27417122 - 27417167
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  27417122 ccttggaacttgaaatgaattttcttcactttgtattgttttcaaa 27417167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 16593614 - 16593654
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  16593614 ggaacttgaaatgaattttcttcactttgtattgtcttcaa 16593654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 18236130 - 18236206
Alignment:
Q  168 ccctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||  ||||||| | ||||| ||| |||| |||||||||||||||| ||||||  |||||||||||||||    
T  18236130 ccctttttcgatcattcttccgtctttaaatgcctttgaacttgaaatgaattttcttcatcttgtattgtcttcaa 18236206  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 18818956 - 18818912
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  18818956 cttggaacttgaattgaattttcttcactttgtattgtcttcaaa 18818912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 17415028 - 17415071
Alignment:
Q  205 gaacttgaaatgaattatcttcactttgtattgtcttcaaataa 248  Q
    |||||||||||||||| |||||||||| | ||||||||||||||    
T  17415028 gaacttgaaatgaattttcttcactttttgttgtcttcaaataa 17415071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 22525679 - 22525726
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    ||||| |||||||||| |||| |||||||||||| |||||||||||||    
T  22525679 ccttgaaacttgaaataaattttcttcactttgtgttgtcttcaaata 22525726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 30999021 - 30998982
Alignment:
Q  205 gaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  30999021 gaacttgaaatgaattttctccactttgtattgtcttcaa 30998982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 24188224 - 24188179
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    |||||| ||||| |||||||  ||||||||||||||||||||||||    
T  24188224 ccttggcacttggaatgaatcttcttcactttgtattgtcttcaaa 24188179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 25474288 - 25474248
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  25474288 ggaacctgaaatgaattttcttcactttatattgtcttcaa 25474248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 11564 - 11604
Alignment:
Q  207 acttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11564 acttgaaatgaattttcttcactttgtattgtcttcaaata 11604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 2040 - 1997
Alignment:
Q  202 ttggaacttgaaatgaattatcttcactttgtattgtcttcaaa 245  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  2040 ttggaacttgaaatgaattttctttactttgtattgtcttcaaa 1997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 26819 - 26858
Alignment:
Q  205 gaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  26819 gaacttgaaacgaattttcttcactttgtattgtcttcaa 26858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 2863 - 2817
Alignment:
Q  200 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaat 246  Q
    ||||||| ||| ||||||||| |||||||||||||||||| ||||||    
T  2863 ccttggatctttaaatgaattttcttcactttgtattgtcatcaaat 2817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 22477 - 22514
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtctt 241  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  22477 ggaacttgaaatgaattttcttcaccttgtattgtctt 22514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 2754 - 2709
Alignment:
Q  201 cttggaacttgaaatgaattatcttcactttgtattgtcttcaaat 246  Q
    |||||||| |||||||| || |||||||| ||||||||||||||||    
T  2754 cttggaacatgaaatgagttttcttcactctgtattgtcttcaaat 2709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 59038 - 58958
Alignment:
Q  166 gaccctttttcggccattctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 247  Q
    |||||||||||   | ||||||| |||| | || ||||||||||| ||||||||| |||||| |||| ||||||||||||||    
T  59038 gaccctttttcaagcgttctttcgtcttgtgataccttggaactttaaatgaatt-tcttcattttgcattgtcttcaaata 58958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 7870 - 7830
Alignment:
Q  204 ggaacttgaaatgaattatcttcactttgtattgtcttcaa 244  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  7870 ggaacttgaaatgaattttcttgactttgtactgtcttcaa 7830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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