View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_257 (Length: 248)

Name: NF6876A_low_257
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_257
NF6876A_low_257
[»] chr7 (7 HSPs)
chr7 (15-240)||(28428878-28429103)
chr7 (70-148)||(25102630-25102708)
chr7 (98-183)||(15673010-15673095)
chr7 (72-148)||(18503171-18503247)
chr7 (73-183)||(34703029-34703139)
chr7 (114-179)||(34183106-34183171)
chr7 (114-179)||(34203695-34203760)
[»] chr5 (9 HSPs)
chr5 (80-179)||(33134088-33134187)
chr5 (66-148)||(5868363-5868445)
chr5 (45-148)||(7883867-7883970)
chr5 (66-147)||(29860855-29860936)
chr5 (46-184)||(42683969-42684107)
chr5 (98-183)||(31077867-31077952)
chr5 (107-235)||(8095895-8096023)
chr5 (72-186)||(15922239-15922353)
chr5 (98-148)||(25347155-25347205)
[»] scaffold0957 (1 HSPs)
scaffold0957 (97-179)||(1674-1756)
[»] chr3 (4 HSPs)
chr3 (66-179)||(28457840-28457953)
chr3 (73-148)||(46663198-46663272)
chr3 (66-148)||(21495073-21495154)
chr3 (46-239)||(33072591-33072784)
[»] chr8 (5 HSPs)
chr8 (98-178)||(16456515-16456595)
chr8 (70-179)||(32962047-32962156)
chr8 (66-140)||(37246152-37246226)
chr8 (66-183)||(16295325-16295442)
chr8 (66-183)||(16303027-16303144)
[»] chr2 (4 HSPs)
chr2 (74-142)||(41595236-41595304)
chr2 (46-179)||(13349562-13349695)
chr2 (66-179)||(37485588-37485701)
chr2 (72-148)||(40619788-40619864)
[»] scaffold0702 (1 HSPs)
scaffold0702 (81-238)||(3976-4132)
[»] scaffold0662 (1 HSPs)
scaffold0662 (81-238)||(3970-4126)
[»] chr6 (5 HSPs)
chr6 (66-183)||(23404474-23404591)
chr6 (75-148)||(29979489-29979562)
chr6 (73-148)||(12255105-12255180)
chr6 (95-183)||(32329367-32329454)
chr6 (60-141)||(12267329-12267410)
[»] chr1 (5 HSPs)
chr1 (66-179)||(28622974-28623087)
chr1 (73-148)||(37347104-37347179)
chr1 (72-183)||(49549507-49549618)
chr1 (46-148)||(48527351-48527453)
chr1 (95-148)||(46239074-46239127)
[»] chr4 (6 HSPs)
chr4 (68-179)||(34513815-34513926)
chr4 (69-179)||(28115987-28116097)
chr4 (70-141)||(3767727-3767798)
chr4 (98-148)||(17702147-17702197)
chr4 (97-179)||(34940309-34940391)
chr4 (114-147)||(53923754-53923787)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 28428878 - 28429103
Alignment:
Q  15 gacatcaaggaggaattaggacaaatgtcatgtttgatagttatgatatgaagacatgatatgataaatttatcacatcatgtttaaatcttatgtttaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28428878 gacatcaaggaggaattaggacaaatgtcatgtttgatagttatgatacgaagacatgatatgataaatttatcacatcatgtttaaatcttatgtttaa 28428977  T
Q  115 tgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaatttatattttacatatatgttaggttagaaactttcct 214  Q
    ||||||||||| || |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||| |||| | ||||    
T  28428978 tgcaccaaagaaataggataaaataaattattttgtaatcttatcctaacttatctttgtaatttatattttaaatatatgttaggtttgaaattatcct 28429077  T
Q  215 aataggattataaattcattccttag 240  Q
    ||||||||||||||||||||||||||    
T  28429078 aataggattataaattcattccttag 28429103  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 25102630 - 25102708
Alignment:
Q  70 atgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    ||||||||||| |||||||||||  |  |||||||| |||||| |||||||||| |||| |||||||||||| ||||||    
T  25102630 atgatatgatatatttatcacattctacttaaatctcatgtttgatgcaccaaatagataggataaaataaattatttt 25102708  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 15673095 - 15673010
Alignment:
Q  98 ttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaatttatat 183  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||| |||||   ||| |||||| |||| | |||| |||||||||    
T  15673095 ttaaatctcatgtttgatgcaccaaagagataggataaaataaaccattttcctatcatatcctgactttcctttgcaatttatat 15673010  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 18503247 - 18503171
Alignment:
Q  72 gatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    ||||||||| ||| |||| ||| || |||||| | |||||| ||||||||||||||| ||||||||||||| |||||    
T  18503247 gatatgatacattaatcatatcctgcttaaatatcatgtttgatgcaccaaagagataggataaaataaaccatttt 18503171  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 34703029 - 34703139
Alignment:
Q  73 atatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgctttt 172  Q
    |||||||| ||| |||| ||| || |||||||  |||||| ||||||||||   ||  ||||||||||||||||||   ||| |||||| |||| | |||    
T  34703029 atatgatacattaatcatatcctgcttaaatcacatgtttgatgcaccaaaagtatatgataaaataaactattttcctatcatatcctgactttccttt 34703128  T
Q  173 gtaatttatat 183  Q
    |||||||||||    
T  34703129 gtaatttatat 34703139  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 34183106 - 34183171
Alignment:
Q  114 atgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaattt 179  Q
    |||||| |||||||| |||||||||||||||||||   ||| |||||| |||||| ||| ||||||    
T  34183106 atgcactaaagagataggataaaataaactatttttctatcctatcctgacttgcctttataattt 34183171  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 34203695 - 34203760
Alignment:
Q  114 atgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaattt 179  Q
    |||||| |||||||| |||||||||||||||||||   ||| |||||| |||||| ||| ||||||    
T  34203695 atgcactaaagagataggataaaataaactatttttctatcctatcctgacttgcctttataattt 34203760  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 33134088 - 33134187
Alignment:
Q  80 aaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaattt 179  Q
    ||||| |||| ||| || ||||||||||||||||||||||||||| ||| ||||||||||||| |||||   ||| |||||| |||| | ||||||||||    
T  33134088 aaattaatcatatcctgcttaaatcttatgtttaatgcaccaaagggataggataaaataaaccattttcctatcctatcctgactttcctttgtaattt 33134187  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 5868445 - 5868363
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    ||||| ||||||||| ||| |||||||| |  |||||||| |||||| ||||||||||||||| ||||||||||||| |||||    
T  5868445 agacaagatatgatatattaatcacatcctacttaaatctcatgtttgatgcaccaaagagataggataaaataaaccatttt 5868363  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 7883970 - 7883867
Alignment:
Q  45 tgtttgatagttatgatatgaagacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaacta 144  Q
    |||||||| || | |||| | ||||| ||||||||| ||| |||| ||| || ||||||||||||||| ||||| ||||| ||| ||||||||||||| |    
T  7883970 tgtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttatgtttgatgcatcaaagggataggataaaataaacca 7883871  T
Q  145 tttt 148  Q
    ||||    
T  7883870 tttt 7883867  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 29860855 - 29860936
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattt 147  Q
    ||||||||||||||| ||| |||| ||  || |||||| | |||||| ||||||||||||||| ||||||||||||| ||||    
T  29860855 agacatgatatgatacattaatcatattctgcttaaatttcatgtttgatgcaccaaagagataggataaaataaaccattt 29860936  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 42684107 - 42683969
Alignment:
Q  46 gtttgatagttatgatatgaagacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactat 145  Q
    ||||||| |||| |||| | ||||||||||||||| ||| |||| ||| || |||||||| |||||| | ||| ||||| |||  |||||||||||  ||    
T  42684107 gtttgatggttaggatagggagacatgatatgatacattaatcatatcctgcttaaatctcatgtttcaagcatcaaagggataagataaaataaatcat 42684008  T
Q  146 tttgtaatcttatcctaacttgcttttgtaatttatatt 184  Q
    |||   ||| |||||| |||| | |||||||||| ||||    
T  42684007 ttttctatcatatcctgactttcctttgtaatttctatt 42683969  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 31077867 - 31077952
Alignment:
Q  98 ttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaatttatat 183  Q
    |||||||| |||||| ||||||||||| | | ||||||||||||||||||| | ||  |||| | |||| | ||||||||||||||    
T  31077867 ttaaatctaatgtttgatgcaccaaagggttaggataaaataaactattttcttattctatcatgactttcctttgtaatttatat 31077952  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 235
Target Start/End: Original strand, 8095895 - 8096023
Alignment:
Q  107 atgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaatttatattttacatatatgttaggttagaa 206  Q
    |||||||||||| ||||||||| | |||||||||| ||||||   ||  |||||||||||   |||||||||| |||  |  |||||||||  |||||||    
T  8095895 atgtttaatgcatcaaagagatagaataaaataaattatttttctattctatcctaacttatatttgtaatttttatcctgaatatatgttgagttagaa 8095994  T
Q  207 actttcctaataggattataaattcattc 235  Q
    ||| || | ||| ||||| ||||||||||    
T  8095995 actatcttgataagattaaaaattcattc 8096023  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 15922353 - 15922239
Alignment:
Q  72 gatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttt 171  Q
    ||||||||| ||| |||| ||| || |||||||| |||||| ||||| ||||| |||  ||||||||||| ||||||   ||| |||| | |||| | ||    
T  15922353 gatatgatacattaatcatatcttgcttaaatctcatgtttgatgcatcaaagtgatatgataaaataaattatttttctatcatatcatgactttcctt 15922254  T
Q  172 tgtaatttatatttt 186  Q
    |||||||| ||||||    
T  15922253 tgtaatttctatttt 15922239  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 25347205 - 25347155
Alignment:
Q  98 ttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    |||||||| |||||| ||||||||||| ||| ||||||||||||| |||||    
T  25347205 ttaaatctcatgtttgatgcaccaaagggataggataaaataaaccatttt 25347155  T

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Target: scaffold0957 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 1674 - 1756
Alignment:
Q  97 tttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaattt 179  Q
    ||||||||||||||||  |||||||||||||| |||| |||||||  |||||   |||||||||||||||| |||||||||||    
T  1674 tttaaatcttatgtttggtgcaccaaagagataggatgaaataaatcatttttctatcttatcctaacttggttttgtaattt 1756  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 28457953 - 28457840
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaact 165  Q
    ||||| ||||||||| ||| |||| ||| || ||||||||| ||||| ||||||||||| |||  |||||||||||| |||||   ||||||||| ||||    
T  28457953 agacaggatatgatacattaatcatatcctgcttaaatcttgtgtttgatgcaccaaagtgatatgataaaataaaccatttttctatcttatcccaact 28457854  T
Q  166 tgcttttgtaattt 179  Q
    | | ||||||||||    
T  28457853 ttcctttgtaattt 28457840  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 46663198 - 46663272
Alignment:
Q  73 atatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    |||||||| |||||||| ||||||||||||||| || ||| |||||||||| |||| |||| | ||||||||||||    
T  46663198 atatgatacatttatcatatcatgtttaaatctcatatttgatgcaccaaacagataggat-atataaactatttt 46663272  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 21495073 - 21495154
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    ||||||||||||||| ||| |||| ||| |||| |||||| |||||| ||||||||||  ||| ||||||||||||| |||||    
T  21495073 agacatgatatgatatattaatcatatcttgtt-aaatctcatgtttgatgcaccaaattgataggataaaataaacgatttt 21495154  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 33072591 - 33072784
Alignment:
Q  46 gtttgatagttatgatatgaagacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactat 145  Q
    |||||||||| | |||| | |||||  |||||||| ||| |||| ||| | ||||||| | |||||| ||||||| |||  ||  |||||||||||| ||    
T  33072591 gtttgatagtcaggatagggagacaaaatatgatacattaatcatatcctatttaaatttcatgtttgatgcacctaaggaatatgataaaataaaccat 33072690  T
Q  146 tttgtaatcttatcctaacttgcttttgtaatttatattttacatatatgttaggttagaaactttcctaataggattataaattcattcctta 239  Q
    |||   ||| |||||||| || | |||||||||| |||  |   |||| | ||||||||||| | || | ||||||||||||  ||||||||||    
T  33072691 tttcctatcatatcctaagtttcctttgtaatttctatcctgagtataggctaggttagaaattatcatgataggattataagatcattcctta 33072784  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 16456515 - 16456595
Alignment:
Q  98 ttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaatt 178  Q
    |||||| | |||||| |||||||||||||||  |||||||||||||||||| | ||| |||||| | ||||||||||||||    
T  16456515 ttaaatatcatgtttgatgcaccaaagagataagataaaataaactatttttttatcctatcctgatttgcttttgtaatt 16456595  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 32962047 - 32962156
Alignment:
Q  70 atgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgct 169  Q
    ||||||||||| ||| |||| ||| || |||||||| |||||| ||||||||| | ||| | |||||||||||||||||   ||| |||||| |||| |     
T  32962047 atgatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaatgggatagaataaaataaactattttcctatcatatcctgactttcc 32962146  T
Q  170 tttgtaattt 179  Q
    ||||||||||    
T  32962147 tttgtaattt 32962156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 37246152 - 37246226
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataa 140  Q
    ||||||||||||||| ||| |||| ||| || |||||| | |||||| |||||| ||| |||| |||||||||||    
T  37246152 agacatgatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaaaagataggataaaataa 37246226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 16295325 - 16295442
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaact 165  Q
    |||||| |||||||| ||| |||| ||| || |||||| | |||||| |||||| |||||||| | ||| ||||||| ||||    ||| |||||| |||    
T  16295325 agacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaatttccctatcatatcctgact 16295424  T
Q  166 tgcttttgtaatttatat 183  Q
    | | ||||||||||||||    
T  16295425 ttcctttgtaatttatat 16295442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 16303027 - 16303144
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaact 165  Q
    |||||| |||||||| ||| |||| ||| || |||||| | |||||| |||||| |||||||| | ||| ||||||| ||||    ||| |||||| |||    
T  16303027 agacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaatttccctatcatatcctgact 16303126  T
Q  166 tgcttttgtaatttatat 183  Q
    | | ||||||||||||||    
T  16303127 ttcctttgtaatttatat 16303144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 41595236 - 41595304
Alignment:
Q  74 tatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaac 142  Q
    ||||||| ||| |||| ||| || |||||||| |||||| |||||||||||||||||||||||||||||    
T  41595236 tatgatacattaatcatatcgtgcttaaatctcatgtttgatgcaccaaagagattggataaaataaac 41595304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 13349695 - 13349562
Alignment:
Q  46 gtttgatagttatgatatgaagacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactat 145  Q
    |||||||||| | |||| ||||||| ||||||||| ||| || | ||| |  |||||||| |||||| ||||||||||  ||| ||||||||||||| ||    
T  13349695 gtttgatagtcaggataggaagacaggatatgatacattaattatatcctacttaaatctcatgtttgatgcaccaaatggataggataaaataaacaat 13349596  T
Q  146 tttgtaatcttatcctaacttgcttttgtaattt 179  Q
     || | ||| | ||||||||| | ||||||||||    
T  13349595 attcttatcctctcctaactttcctttgtaattt 13349562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 37485588 - 37485701
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaact 165  Q
    ||||| ||||| ||| ||| |||| ||| || |||||||| |||||| |||||||||| ||||  |||||||||||| |||||   ||| |||||| |||    
T  37485588 agacaagatataatatattaatcatatcctgcttaaatctcatgtttgatgcaccaaaaagatatgataaaataaaccattttcctatcatatcctgact 37485687  T
Q  166 tgcttttgtaattt 179  Q
    | | ||||||||||    
T  37485688 ttcctttgtaattt 37485701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 40619864 - 40619788
Alignment:
Q  72 gatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    ||||||||| ||| |||| ||| || |||||||| |||||| ||||||||||| |||  |||||||||||| |||||    
T  40619864 gatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatatgataaaataaaccatttt 40619788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 4132 - 3976
Alignment:
Q  81 aatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaattta 180  Q
    ||||||||| |||  | |||||| | |||||| ||||||||||||| | ||||||||||||||||||    |||||||||||||||   ||||||||||     
T  4132 aatttatcatatccggcttaaatatcatgtttgatgcaccaaagaggt-ggataaaataaactatttacctatcttatcctaacttatctttgtaatttt 4034  T
Q  181 tattttacatatatgttaggttagaaactttcctaataggattataaattcattcctt 238  Q
    ||| |||  |||| | |  ||| |||||| || | ||||||||| |||||||||||||    
T  4033 tatcttaagtataagatgagttggaaactatcatgataggattacaaattcattcctt 3976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 238
Target Start/End: Original strand, 3970 - 4126
Alignment:
Q  81 aatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaattta 180  Q
    ||||||||| |||  | |||||| | |||||| ||||||||||||| | ||||||||||||||||||    |||||||||||||||   ||||||||||     
T  3970 aatttatcatatccggcttaaatatcatgtttgatgcaccaaagaggt-ggataaaataaactatttacctatcttatcctaacttatctttgtaatttt 4068  T
Q  181 tattttacatatatgttaggttagaaactttcctaataggattataaattcattcctt 238  Q
    ||| |||  |||| | |  ||| |||||| || | ||||||||| |||||||||||||    
T  4069 tatcttaagtataagatgagttggaaactatcatgataggattacaaattcattcctt 4126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 23404474 - 23404591
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaact 165  Q
    ||||||||||||||| ||| || | ||| ||  ||||| | |||||| ||||||||||||||| ||||||||||||| ||||    ||| |||||| |||    
T  23404474 agacatgatatgatacattaataatatcctgcataaatttcatgtttgatgcaccaaagagataggataaaataaaccatttccatatcatatcctgact 23404573  T
Q  166 tgcttttgtaatttatat 183  Q
    | | ||||||||||||||    
T  23404574 ttcctttgtaatttatat 23404591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 29979562 - 29979489
Alignment:
Q  75 atgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    |||||| ||| |||| ||||||||||||||| |||||| ||||||||||| |||  |||||||||||| |||||    
T  29979562 atgatacattaatcatatcatgtttaaatctcatgtttgatgcaccaaagggatatgataaaataaaccatttt 29979489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 12255105 - 12255180
Alignment:
Q  73 atatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    |||||||| ||| |||| ||| || |||||||| |||||| ||||||||||| ||| ||||||||||||| |||||    
T  12255105 atatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatgggataaaataaaccatttt 12255180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 32329367 - 32329454
Alignment:
Q  95 tgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaatttatat 183  Q
    ||||||||||  |||||| ||||||||||| |||  |||||||||||| |||||   |||||||||| |||| | ||||||||||||||    
T  32329367 tgtttaaatcgcatgtttgatgcaccaaag-gatatgataaaataaaccattttcatatcttatcctgactttcctttgtaatttatat 32329454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 12267329 - 12267410
Alignment:
Q  60 atatgaagacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaa 141  Q
    ||||| ||||||||||| ||| ||| || | ||| ||||||||| |||||||| |||||||||| ||||  ||| |||||||    
T  12267329 atatggagacatgatattatatattaattatatcctgtttaaattttatgtttgatgcaccaaacagatatgatgaaataaa 12267410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 28623087 - 28622974
Alignment:
Q  66 agacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaact 165  Q
    ||||||||||||||| ||| |||| ||| | |||||||   |||||| ||||||||||| ||| | |||||||||||||||||   ||| |||||| |||    
T  28623087 agacatgatatgatacattaatcatatcctatttaaattccatgtttgatgcaccaaagggatagaataaaataaactatttttctatcctatcctgact 28622988  T
Q  166 tgcttttgtaattt 179  Q
    | | ||||||||||    
T  28622987 ttcctttgtaattt 28622974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 37347179 - 37347104
Alignment:
Q  73 atatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    |||||||| ||| |||| ||| || ||||||||||||||| ||||||||||| |||  |||||||||||| |||||    
T  37347179 atatgatacattaatcatatcttgcttaaatcttatgtttgatgcaccaaagggatatgataaaataaaccatttt 37347104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 49549507 - 49549618
Alignment:
Q  72 gatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttt 171  Q
    ||||||||| ||| |||| ||| || |||||||| || ||| ||||||||||| ||| ||||||||||||  ||||    ||| |||||| |||| | ||    
T  49549507 gatatgatacattaatcatatcctgcttaaatctcatatttgatgcaccaaagggataggataaaataaatcatttccctatcatatcctgactttcctt 49549606  T
Q  172 tgtaatttatat 183  Q
    ||||||||||||    
T  49549607 tgtaatttatat 49549618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 48527351 - 48527453
Alignment:
Q  46 gtttgatagttatgatatgaagacatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactat 145  Q
    |||||||  ||||| |||| ||| | ||||||||| |||||||| ||| || |||||| | |||||| ||||| |||| ||||  |||||||||||| ||    
T  48527351 gtttgatgattatggtatgtagaaaggatatgatatatttatcatatcttgcttaaatttcatgtttgatgcatcaaaaagatatgataaaataaacaat 48527450  T
Q  146 ttt 148  Q
    |||    
T  48527451 ttt 48527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 46239074 - 46239127
Alignment:
Q  95 tgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    |||||||||| ||||| | ||||| ||||||||| ||||||||||||| |||||    
T  46239074 tgtttaaatcctatgtatgatgcatcaaagagataggataaaataaacaatttt 46239127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 34513926 - 34513815
Alignment:
Q  68 acatgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttg 167  Q
    ||||||||||||| ||| || | ||| || |||||||| |||||| ||||||||||  ||| ||||||||||||| |||||   ||| |||||| ||||     
T  34513926 acatgatatgatacattaattatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaaataaaccatttttctatcatatcctgacttt 34513827  T
Q  168 cttttgtaattt 179  Q
    | ||||||||||    
T  34513826 cctttgtaattt 34513815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 28116097 - 28115987
Alignment:
Q  69 catgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgc 168  Q
    |||||||||||| ||| |||| || ||| |||||||| || ||| ||||||| ||| |||  |||||||||||| |||||   ||| ||||||||||| |    
T  28116097 catgatatgatacattaatcatattatgcttaaatctcatatttgatgcacctaagtgataagataaaataaaccattttcctatcctatcctaactttc 28115998  T
Q  169 ttttgtaattt 179  Q
     ||||||||||    
T  28115997 ctttgtaattt 28115987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 3767727 - 3767798
Alignment:
Q  70 atgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagagattggataaaataaa 141  Q
    ||||||||||| ||| |||| ||| || |||||| | |||||| ||||||||||| ||| ||||||||||||    
T  3767727 atgatatgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 3767798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 17702147 - 17702197
Alignment:
Q  98 ttaaatcttatgtttaatgcaccaaagagattggataaaataaactatttt 148  Q
    |||||||| |||||| |||||||||||||||  ||||||||||||| ||||    
T  17702147 ttaaatctcatgtttgatgcaccaaagagataagataaaataaactgtttt 17702197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 34940309 - 34940391
Alignment:
Q  97 tttaaatcttatgtttaatgcaccaaagagattggataaaataaactattttgtaatcttatcctaacttgcttttgtaattt 179  Q
    ||||||||| |||||| ||||||||||  ||| ||||||||||||| |||||   ||| |||||| |||| | ||||||||||    
T  34940309 tttaaatctcatgtttgatgcaccaaaaggataggataaaataaaccattttcatatcctatcctgactttcctttgtaattt 34940391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 53923754 - 53923787
Alignment:
Q  114 atgcaccaaagagattggataaaataaactattt 147  Q
    ||||||||||||||| ||||||||||||||||||    
T  53923754 atgcaccaaagagataggataaaataaactattt 53923787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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