View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_263 (Length: 247)
Name: NF6876A_low_263
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_263 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10289951 - 10289724
Alignment:
| Q |
1 |
agcaagaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgat |
100 |
Q |
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| T |
10289951 |
agcaagaaacaatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgat |
10289852 |
T |
|
| Q |
101 |
accatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatatt-ttttcaatgcagt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10289851 |
accatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatatttttttcaatgcagt |
10289752 |
T |
|
| Q |
200 |
gtgaatattttttcgaactctttctgat |
227 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
10289751 |
gtgaatattttttcgaactctttctgat |
10289724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 9747568 - 9747748
Alignment:
| Q |
11 |
gatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttt |
110 |
Q |
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| T |
9747568 |
gatactgctgtgccacaa-gttttccgagacatcagctctggtctaaatggtacgatagaattcttaagtttcaagcattgagcaatgataccatagttt |
9747666 |
T |
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| Q |
111 |
tgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatattttttcaa |
193 |
Q |
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| T |
9747667 |
tgatttaag-aaaagccggttaatgttgttttattatgttcttacttcatgtgcaattttatcgacaaataatcttttttcaa |
9747748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 10298086 - 10297883
Alignment:
| Q |
3 |
caagaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgatac |
102 |
Q |
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||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| | | |||| |
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| T |
10298086 |
caagagacgatactgttgtgccacaa-gttttcagagacatcagctctggtttaaatggtacaataaaattcttaagt--------------attcatac |
10298002 |
T |
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| Q |
103 |
catagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataat-attttttcaatgcagtgt |
201 |
Q |
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| T |
10298001 |
catagttttgatacaa-aaaaaggcggttaatgttgttttattatgcttttacttcccgtgcaattatattggtgaataatctttttttcaatgc----t |
10297907 |
T |
|
| Q |
202 |
gaatattttttcgaactctttctg |
225 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
10297906 |
gaactttttttcgaactctttctg |
10297883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 34694292 - 34694209
Alignment:
| Q |
38 |
agacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttttgattcaagaa |
121 |
Q |
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|
||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34694292 |
agacatcagctctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactatagttttgattcaagaa |
34694209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 34716704 - 34716621
Alignment:
| Q |
38 |
agacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttttgattcaagaa |
121 |
Q |
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||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34716704 |
agacatcagctctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactatagttttgattcaagaa |
34716621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 37744082 - 37744192
Alignment:
| Q |
11 |
gatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttt |
110 |
Q |
| |
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|||||||||||||||||| |||| ||| |||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| |
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| T |
37744082 |
gatactgttgtgccacaag--tttccgagaaatcaactctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactttagttt |
37744179 |
T |
|
| Q |
111 |
tgattcaagaaaa |
123 |
Q |
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||||| ||||||| |
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| T |
37744180 |
tgatttaagaaaa |
37744192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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