View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_264 (Length: 247)

Name: NF6876A_low_264
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_264
NF6876A_low_264
[»] chr7 (10 HSPs)
chr7 (13-238)||(20053227-20053452)
chr7 (13-167)||(2278236-2278391)
chr7 (49-179)||(19842384-19842514)
chr7 (82-168)||(2641637-2641723)
chr7 (14-168)||(17915651-17915805)
chr7 (40-163)||(17918788-17918910)
chr7 (193-238)||(17915569-17915614)
chr7 (100-167)||(19142741-19142808)
chr7 (100-167)||(20742140-20742207)
chr7 (10-67)||(8807580-8807637)
[»] chr5 (3 HSPs)
chr5 (32-178)||(24885134-24885280)
chr5 (40-167)||(21216340-21216467)
chr5 (82-167)||(9824313-9824398)
[»] chr8 (4 HSPs)
chr8 (13-189)||(5826350-5826526)
chr8 (40-138)||(18565905-18566003)
chr8 (13-130)||(23432813-23432931)
chr8 (100-189)||(5828949-5829038)
[»] chr4 (2 HSPs)
chr4 (55-163)||(22316639-22316747)
chr4 (25-181)||(5842712-5842869)
[»] scaffold0062 (1 HSPs)
scaffold0062 (40-168)||(2667-2795)
[»] chr3 (3 HSPs)
chr3 (62-181)||(21318506-21318624)
chr3 (32-134)||(11829429-11829531)
chr3 (110-167)||(13340747-13340804)
[»] chr6 (1 HSPs)
chr6 (88-168)||(19731562-19731642)
[»] chr2 (4 HSPs)
chr2 (32-168)||(16197371-16197507)
chr2 (13-129)||(25348187-25348303)
chr2 (14-167)||(8685730-8685884)
chr2 (60-132)||(16152144-16152216)
[»] scaffold0041 (1 HSPs)
scaffold0041 (52-164)||(26530-26641)
[»] chr1 (2 HSPs)
chr1 (36-168)||(9756448-9756580)
chr1 (82-178)||(19223698-19223794)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 20053452 - 20053227
Alignment:
Q  13 ggacatcaaacgcaaaatttgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatc 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20053452 ggacatcaaacacaaaatttgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatc 20053353  T
Q  113 tgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggacactaggaacgaagataacaacgaatagcaaaggaaattcaaagga 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20053352 tgatatagcagttcttttgtcttcttccataaacgtgttcaaccagacaaaggacactaggaacgaagataacaacgaatagcaaaggaaattcaaagga 20053253  T
Q  213 cttttcattgggattattcatatcag 238  Q
    ||||||||||||||||||||||||||    
T  20053252 cttttcattgggattattcatatcag 20053227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 2278391 - 2278236
Alignment:
Q  13 ggacatcaaacgcaaaatttgactggc-tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcat 111  Q
    ||||||||||| || || ||||||||| |||||||||| |||||||||| |||||||||||||| || | |||||||||||| || ||||||||||| ||    
T  2278391 ggacatcaaacacagaagttgactggcatacttggatccaagggacccagaatccacataagcttttgtcttattttgtgagctaactctatcatagtat 2278292  T
Q  112 ctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggac 167  Q
     ||||| | || || |||||||||||||  | ||||| | |||||| |||||||||    
T  2278291 atgataaatcaattattttgtcttcttctgtctacgtttgcaaccaaacaaaggac 2278236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 19842384 - 19842514
Alignment:
Q  49 ctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttccatatacgt 148  Q
    |||||||| ||| |||||||||||||| || | ||||| ||||| || | |||||||||| |||||||| |||||||||||||||||||||  | |||||    
T  19842384 ctaagggagccagaatccacataagcttttgttttattctgtgaattgtgtctatcatagtatctgatagagcagttcttttgtcttcttctgtctacgt 19842483  T
Q  149 gttcaaccagacaaaggacactaggaacgaa 179  Q
    || |||||||| || |||||  |||||||||    
T  19842484 gtacaaccagaaaagggacataaggaacgaa 19842514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 2641637 - 2641723
Alignment:
Q  82 ttattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggaca 168  Q
    ||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||  | || |||| |||||||||||||||||    
T  2641637 ttattctgtgagctatctctatcatagtatctgatagagcagttcttttgtcttcttctgtttatgtgtgcaaccagacaaaggaca 2641723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 17915805 - 17915651
Alignment:
Q  14 gacatcaaacgcaaaatttgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatct 113  Q
    ||||||| || || ||| ||||| ||||||||||||| ||||||||| ||||||| |||||| || | ||||| |||||| | |||||  ||||| ||||    
T  17915805 gacatcagacacataatctgactagctacttggatcttagggacccagaatccacgtaagcttttgtcttattctgtgagctgtctctgccatagtatct 17915706  T
Q  114 gatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggaca 168  Q
    |||| || ||| ||||||||||||||  | ||| ||| ||||  |||||||||||    
T  17915705 gatagagtagtgcttttgtcttcttctgtctacatgtacaacacgacaaaggaca 17915651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 17918910 - 17918788
Alignment:
Q  40 tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttc 139  Q
    ||||||||| ||||||||||| |||||||||||||| || | ||||  ||||| || || ||||||||| ||| |||| |||| ||||||| ||||||||    
T  17918910 tacttggatataagggacccagaatccacataagct-ttgtcttatcatgtgaattgtccctatcatagtatccgatagagcatttcttttatcttcttc 17918812  T
Q  140 catatacgtgttcaaccagacaaa 163  Q
      | ||||||| ||| ||||||||    
T  17918811 tgtctacgtgtgcaaacagacaaa 17918788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 17915614 - 17915569
Alignment:
Q  193 agcaaaggaaattcaaaggacttttcattgggattattcatatcag 238  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||    
T  17915614 agcaaaggaaattcaaaggactttccaatgggattatccatatcag 17915569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 19142741 - 19142808
Alignment:
Q  100 ctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggac 167  Q
    |||| |||| |||||||| || ||||||||||||||||||  | ||||||| ||| ||||||||||||    
T  19142741 ctataatagtatctgataaagtagttcttttgtcttcttctgtctacgtgtgcaaacagacaaaggac 19142808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 20742140 - 20742207
Alignment:
Q  100 ctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggac 167  Q
    |||| |||| |||||||| || ||||||||||||||||||  | ||||||| ||| ||||||||||||    
T  20742140 ctataatagtatctgataaagtagttcttttgtcttcttctgtctacgtgtgcaaacagacaaaggac 20742207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 8807637 - 8807580
Alignment:
Q  10 gatggacatcaaacgcaaaatttgactggctacttggatctaagggacccataatcca 67  Q
    |||||| |||| || |||||| ||||||||||||||||||  ||||||||| ||||||    
T  8807637 gatggaaatcagacacaaaatctgactggctacttggatcagagggacccagaatcca 8807580  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 24885134 - 24885280
Alignment:
Q  32 tgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttg 131  Q
    |||| ||||||||| |||||||||||| | |||||||||||||| || | ||||| |||||||| | |||||||||||||||  || |||||||||||||    
T  24885134 tgacaggctacttgaatctaagggacctagaatccacataagcttttgtcttattatgtgagttttttctatcatagcatctagtagagcagttcttttg 24885233  T
Q  132 tcttcttccatatacgtgttcaaccagacaaaggacactaggaacga 178  Q
    |||||||   | || |||| ||||| ||||||||||| |||||||||    
T  24885234 tcttcttttgtttatgtgtacaaccggacaaaggacattaggaacga 24885280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 21216340 - 21216467
Alignment:
Q  40 tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttc 139  Q
    ||||||||||  ||||||||| |||| || |||||  || | ||||||| | |||| | ||| |||||| |||||||| | ||||| |||||||||||||    
T  21216340 tacttggatccgagggacccaaaatcaacgtaagcctttgtcttattttataagttgtatctgtcatagtatctgatagatcagttattttgtcttcttc 21216439  T
Q  140 catatacgtgttcaaccagacaaaggac 167  Q
      | || |||| ||| ||||||||||||    
T  21216440 tgtctatgtgtgcaaacagacaaaggac 21216467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 9824398 - 9824313
Alignment:
Q  82 ttattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggac 167  Q
    ||||| ||||| || || ||||| ||| |||||||| |||||||||||||||||| ||  | ||||| | ||| ||||||||||||    
T  9824398 ttattatgtgaattgtccctatcttagtatctgatagagcagttcttttgtcttcctctctctacgtatgcaaacagacaaaggac 9824313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 5826526 - 5826350
Alignment:
Q  13 ggacatcaaacgcaaaatttgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatc 112  Q
    |||||||| ||||| |||||| |||||||||||||||| || ||| || ||| ||| |||| | || | ||||| |||||||| |  ||||||||  |||    
T  5826526 ggacatcagacgcagaatttggctggctacttggatctgagagactcagaattcacgtaagattttgtcttattatgtgagttgttactatcataatatc 5826427  T
Q  113 tgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggacactaggaacgaagataacaacg 189  Q
    ||||| |||| | |||||||||| ||| || ||||||| |||||||||||||||||  | ||||||||| |||||||    
T  5826426 tgatagagcaatgcttttgtctttttctatctacgtgtgcaaccagacaaaggacatcaagaacgaagagaacaacg 5826350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 18566003 - 18565905
Alignment:
Q  40 tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttctt 138  Q
    ||||||||||| ||||||||| ||||||| ||  || || | ||||||||||||   |||||||||||  |||||||| || |||||||||||||||||    
T  18566003 tacttggatctgagggacccagaatccacgtagacttttgtcttattttgtgagaggtctctatcatattatctgataaagaagttcttttgtcttctt 18565905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 23432813 - 23432931
Alignment:
Q  13 ggacatcaaacgcaaaatttgactggc-tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcat 111  Q
    ||||||||||| || ||| |||||||| ||||||||||| |||||||   |||| || |||||| || | ||||| ||||||||  ||||||||||| ||    
T  23432813 ggacatcaaacacagaatctgactggcatacttggatctgagggaccaggaatctacgtaagcttttgtcttattctgtgagttgcctctatcatagtat 23432912  T
Q  112 ctgatatagcagttctttt 130  Q
    |||||| ||||||| ||||    
T  23432913 ctgatagagcagttttttt 23432931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 5829038 - 5828949
Alignment:
Q  100 ctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggacactaggaacgaagataacaacg 189  Q
    ||||||||  |||||||| |||| | |||||||||| ||| || ||||||| |||||||||||||||||  | ||||||||| |||||||    
T  5829038 ctatcataatatctgatagagcaatgcttttgtctttttctatctacgtgtgcaaccagacaaaggacatcaagaacgaagagaacaacg 5828949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 22316639 - 22316747
Alignment:
Q  55 gacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaa 154  Q
    |||||| ||||||| |||||| || | ||||| |||||||| |||||||||||| | |||||| ||||||||||||||||||||| || ||||||| |||    
T  22316639 gacccagaatccacgtaagcttttgtcttattctgtgagttgtctctatcatagtaactgatagagcagttcttttgtcttcttctatgtacgtgtgcaa 22316738  T
Q  155 ccagacaaa 163  Q
    |||||||||    
T  22316739 ccagacaaa 22316747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 5842712 - 5842869
Alignment:
Q  25 caaaatttgactggc-tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcag 123  Q
    |||||| |||||||| |||||| |||| | ||||||| |||| |||||| || || | ||||| |||||||| |||||||||||| |||||||| |||||    
T  5842712 caaaatctgactggcatacttgaatctgaaggacccagaatctacataatcttttatcttattatgtgagttgtctctatcatagtatctgatagagcag 5842811  T
Q  124 ttcttttgtcttcttccatatacgtgttcaaccagacaaaggacactaggaacgaaga 181  Q
    |||||||||||||||   | ||||||| |||||| | |||||||| || |||| ||||    
T  5842812 ttcttttgtcttcttatgtctacgtgtgcaaccaaataaaggacattaagaacaaaga 5842869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 2795 - 2667
Alignment:
Q  40 tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttc 139  Q
    ||||||||| | ||||||||||||| |||||||||| || | ||||  |||||||| |||||||||||| |||||||| || ||||||||||||||||||    
T  2795 tacttggatatgagggacccataattcacataagcttttgtcttatactgtgagttgtctctatcatagtatctgatagagtagttcttttgtcttcttc 2696  T
Q  140 catatacgtgttcaaccagacaaaggaca 168  Q
      | || |||| |||| ||| ||||||||    
T  2695 tgtctatgtgtgcaacaagaaaaaggaca 2667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 21318624 - 21318506
Alignment:
Q  62 aatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagaca 161  Q
    ||||||| |||||| || | ||||| ||||||||||||||||||||| |||||||| || ||| ||||||||||||||  | ||||||| ||||||||||    
T  21318624 aatccacgtaagcttttgtcttattctgtgagttatctctatcatagtatctgatagagtagtgcttttgtcttcttctgtctacgtgtgcaaccagaca 21318525  T
Q  162 aaggacactaggaacgaaga 181  Q
    || | || ||||||||||||    
T  21318524 aaag-cattaggaacgaaga 21318506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 11829429 - 11829531
Alignment:
Q  32 tgactggc-tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttctttt 130  Q
    |||||||| ||||||||||| ||||||||  |||| || |||||| | || |||||||||||||| ||||| |||||| || ||| ||||||||||||||    
T  11829429 tgactggcatacttggatctgagggaccctgaatctacgtaagctttgtt-ttattttgtgagttgtctctctcatagtatttgaaatagcagttctttt 11829527  T
Q  131 gtct 134  Q
    ||||    
T  11829528 gtct 11829531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 13340747 - 13340804
Alignment:
Q  110 atctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggac 167  Q
    |||||||| || ||||||||||||||||||  | ||||||| |||| |||||||||||    
T  13340747 atctgatagaggagttcttttgtcttcttctgtctacgtgtgcaactagacaaaggac 13340804  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 19731642 - 19731562
Alignment:
Q  88 tgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggaca 168  Q
    |||||| |||||||||||||| |||||||| ||||||| |||||||||||||  | ||||||| |||||||||||||||||    
T  19731642 tgtgagctatctctatcatagtatctgatagagcagttattttgtcttcttctgtctacgtgtgcaaccagacaaaggaca 19731562  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 16197371 - 16197507
Alignment:
Q  32 tgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttg 131  Q
    ||||||| ||||||||||| |||||| |||||||||  ||| || || | |||||||||| ||| || ||||||||  |||||||| |||||||||||||    
T  16197371 tgactgggtacttggatctgagggactcataatccatgtaaacttttatcttattttgtgtgttgtcactatcataatatctgatagagcagttcttttg 16197470  T
Q  132 tcttcttccatatacgtgttcaaccagacaaaggaca 168  Q
    ||| ||||  | ||||| | |||| ||||||||||||    
T  16197471 tctccttctgtctacgtatacaactagacaaaggaca 16197507  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 25348303 - 25348187
Alignment:
Q  13 ggacatcaaacgcaaaatttgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatc 112  Q
    |||||||| |||||||||||||| || || |||||||| ||||||| | ||||||| |||| | || | ||||| |||||||| ||||||||||||||||    
T  25348303 ggacatcagacgcaaaatttgacaggataattggatctcagggacctagaatccacgtaagattttgtgttattctgtgagttgtctctatcatagcatc 25348204  T
Q  113 tgatatagcagttcttt 129  Q
    || || || ||||||||    
T  25348203 tggtagagaagttcttt 25348187  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 8685884 - 8685730
Alignment:
Q  14 gacatcaaacgcaaaatttgactggc-tacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatc 112  Q
    |||||||||| || ||| ||| |||| ||||||||| | |||||||   |||| || |||||| || | ||||| |||||||| |||||||||||| |||    
T  8685884 gacatcaaacacagaatctgattggcatacttggatatgagggaccaggaatctacgtaagcttttgtcttattatgtgagttttctctatcatagtatc 8685785  T
Q  113 tgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggac 167  Q
    | ||| || |||| ||||||||| |||  | ||| ||| ||| ||||||||||||    
T  8685784 taatagagaagtttttttgtcttattctgtctacatgtgcaaacagacaaaggac 8685730  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 16152144 - 16152216
Alignment:
Q  60 ataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgt 132  Q
    |||||||||||| ||| || | ||||| | ||| || |||||||||||| |||||||| || |||||||||||    
T  16152144 ataatccacatatgcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgt 16152216  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 26641 - 26530
Alignment:
Q  52 agggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgtt 151  Q
    ||||||||||||||||||||  || || | ||||| ||||| ||||| ||||| ||| || | ||| ||||||| ||||||||||||| || |||||||     
T  26641 agggacccataatccacatatact-ttgtcttattctgtgaattatccctatcgtagtatgttatagagcagttattttgtcttcttctatctacgtgtg 26543  T
Q  152 caaccagacaaag 164  Q
    ||| |||||||||    
T  26542 caaacagacaaag 26530  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 9756448 - 9756580
Alignment:
Q  36 tggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagcagttcttttgtctt 135  Q
    |||||||||||||   ||||||||| | ||||| |||||| || | ||||| |||||||| ||||||| |||| |||||||| || |||| |||||||||    
T  9756448 tggctacttggatacgagggacccagattccacgtaagcttttgtcttattctgtgagttgtctctataatagtatctgatagagaagttattttgtctt 9756547  T
Q  136 cttccatatacgtgttcaaccagacaaaggaca 168  Q
     |||  | || |||| ||| ||||||| |||||    
T  9756548 tttctgtctatgtgtacaaacagacaacggaca 9756580  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 19223698 - 19223794
Alignment:
Q  82 ttattttgtgagttatctctatcatagcatctgatatagcagttcttttgtcttcttccatatacgtgttcaaccagacaaaggacactaggaacga 178  Q
    ||||| |||||||| | || ||||  |||||||||| |||| ||||||||||||||||| | ||||||| | ||  |||||||||||  ||||||||    
T  19223698 ttattctgtgagttttgtcaatcagtgcatctgatagagcaattcttttgtcttcttccgtctacgtgtacgacaggacaaaggacatcaggaacga 19223794  T

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