View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_266 (Length: 246)

Name: NF6876A_low_266
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_266
NF6876A_low_266
[»] chr8 (4 HSPs)
chr8 (34-238)||(16373860-16374064)
chr8 (70-113)||(4985947-4985990)
chr8 (43-122)||(36159341-36159420)
chr8 (73-122)||(8302021-8302070)
[»] chr1 (4 HSPs)
chr1 (34-246)||(32351081-32351293)
chr1 (37-246)||(5499196-5499405)
chr1 (73-127)||(13862351-13862405)
chr1 (70-113)||(25502875-25502918)
[»] chr4 (8 HSPs)
chr4 (38-246)||(8485967-8486175)
chr4 (70-113)||(19649910-19649953)
chr4 (43-119)||(34978111-34978187)
chr4 (73-125)||(40690277-40690329)
chr4 (43-94)||(13155402-13155453)
chr4 (70-125)||(20397780-20397835)
chr4 (43-92)||(8811490-8811539)
chr4 (70-122)||(47421019-47421071)
[»] chr7 (4 HSPs)
chr7 (34-246)||(13442237-13442449)
chr7 (70-113)||(45994791-45994834)
chr7 (76-131)||(17722856-17722911)
chr7 (70-122)||(4936001-4936053)
[»] chr6 (1 HSPs)
chr6 (34-216)||(15676011-15676193)
[»] chr5 (3 HSPs)
chr5 (43-119)||(6051428-6051504)
chr5 (76-122)||(42928920-42928966)
chr5 (43-119)||(33171846-33171922)
[»] chr2 (1 HSPs)
chr2 (79-125)||(13417883-13417929)
[»] chr3 (3 HSPs)
chr3 (73-122)||(10620536-10620585)
chr3 (79-121)||(8132197-8132239)
chr3 (73-122)||(16186528-16186577)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 16374064 - 16373860
Alignment:
Q  34 ttcgagtttgcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctgatgatatgc 133  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||  ||||    
T  16374064 ttcgagttggcatccccatcacgtaaccaacgcactcgagactattgccaacaaatactagcattaagacgggacaacgaatgaatatcagatgcaatgc 16373965  T
Q  134 ttcgcacctcatcatactcaccttcagacaacaactcgccttcgcctttcccatctaactctgccaacctatccttcagagcgattatctttcctggtaa 233  Q
    |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  16373964 ttcgcacctcatcacactcaccatcagacaacaactcgccttctcctttcccatctaactctgccaacctgtccttcagagcggttatcttgcctggtaa 16373865  T
Q  234 gtttt 238  Q
    |||||    
T  16373864 gtttt 16373860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 4985990 - 4985947
Alignment:
Q  70 cgagactgttgccaacaaatactagcattaagacgggacaaaga 113  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  4985990 cgagactgttgccaacaaatactagtattaagacgggtcaaaga 4985947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 36159341 - 36159420
Alignment:
Q  43 gcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatc 122  Q
    ||||| |||||||| |||||  | || || ||||||||||| |||||||||| |||||| |||||||| |||||||||||    
T  36159341 gcatcaccatcacgcaaccactgaacccgggactgttgccagcaaatactagtattaagtcgggacaaggaatgaatatc 36159420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 8302021 - 8302070
Alignment:
Q  73 gactgttgccaacaaatactagcattaagacgggacaaagaatgaatatc 122  Q
    ||||| |||||||||||||| | ||||||||| |||||||||||||||||    
T  8302021 gactgctgccaacaaatacttgtattaagacgagacaaagaatgaatatc 8302070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 32351293 - 32351081
Alignment:
Q  34 ttcgagtttgcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctgatgatatgc 133  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  || |    
T  32351293 ttcgagttagcatcaccatcacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatatctgttgcaatac 32351194  T
Q  134 ttcgcacctcatcatactcaccttcagacaacaactcgccttcgcctttcccatctaactctgccaacctatccttcagagcgattatctttcctggtaa 233  Q
      |||| |||| || ||||| | |||||||||||||||||||| |||||| |||||||||| |||||||| ||||| || ||| ||||||| ||||||||    
T  32351193 cacgcatctcaacacactcaacatcagacaacaactcgccttctcctttcgcatctaactccgccaacctgtcctttagtgcggttatcttacctggtaa 32351094  T
Q  234 gttttgagtatgg 246  Q
    |||||||||||||    
T  32351093 gttttgagtatgg 32351081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 5499196 - 5499405
Alignment:
Q  37 gagtttgcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctgatgatatgcttc 136  Q
    ||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||| |||||||| |     || ||      
T  5499196 gagttggcatcaccatcacgcaaccaacgcacccgagactgttgccaacaaatactagagttaagacgggacagagattgaatatccgtcacaatactat 5499295  T
Q  137 gcacctcatcatactcaccttcagacaacaactcgccttcgcctttcccatctaactctgccaacctatccttcagagcgattatctttcctggtaagtt 236  Q
    | | ||||||| ||||| | ||||||||||   || |||| | ||||||||||||| | |||| ||||||||||||| |  |||||||| ||||||||||    
T  5499296 gtaactcatcacactcaacatcagacaacagtccgacttctcatttcccatctaacaccgccatcctatccttcagaccagttatctttactggtaagtt 5499395  T
Q  237 ttgagtatgg 246  Q
    ||||||||||    
T  5499396 ttgagtatgg 5499405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 13862405 - 13862351
Alignment:
Q  73 gactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctgatg 127  Q
    |||||||||||||||||||||| ||||| ||| ||||||||| |||| |||||||    
T  13862405 gactgttgccaacaaatactagtattaatacgagacaaagaaagaatgtctgatg 13862351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 25502918 - 25502875
Alignment:
Q  70 cgagactgttgccaacaaatactagcattaagacgggacaaaga 113  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||    
T  25502918 cgagactgtttccaacaaatactagtattaagacgggtcaaaga 25502875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 8486175 - 8485967
Alignment:
Q  38 agtttgcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctgatgatatgcttcg 137  Q
    |||| ||||| |||||||| | ||||||||||| | ||||||||||||| |||||||||||||||| ||||||||| |||||||||| ||  || || ||    
T  8486175 agttggcatcaccatcacgcagccaacgcactcaaaactgttgccaacatatactagcattaagacaggacaaagattgaatatctgttgcaatactacg 8486076  T
Q  138 cacctcatcatactcaccttcagacaacaactcgccttcgcctttcccatctaactctgccaacctatccttcagagcgattatctttcctggtaagttt 237  Q
    |||||||||| ||||| | |||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||| |||  |||||||||||||||    
T  8486075 cacctcatcacactcaacatcagacaacaactcgccttctcctttcccatctaacaccgccaacctgtccttcagagcggttaaatttcctggtaagttt 8485976  T
Q  238 tgagtatgg 246  Q
    |||||||||    
T  8485975 tgagtatgg 8485967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 19649910 - 19649953
Alignment:
Q  70 cgagactgttgccaacaaatactagcattaagacgggacaaaga 113  Q
    |||||||||| |||||||||||||| ||||||||||||||||||    
T  19649910 cgagactgtttccaacaaatactagtattaagacgggacaaaga 19649953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 34978111 - 34978187
Alignment:
Q  43 gcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaat 119  Q
    ||||| |||||||| |||||  | || || ||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  34978111 gcatcaccatcacgcaaccactggacccgggactgttgccaacaaatactagtgttaaggcgggacaaggaatgaat 34978187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 40690277 - 40690329
Alignment:
Q  73 gactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctga 125  Q
    ||||| ||||| || ||||||| ||||||||||||||||||||| ||||||||    
T  40690277 gactgctgccagcagatactagtattaagacgggacaaagaatggatatctga 40690329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 13155453 - 13155402
Alignment:
Q  43 gcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactag 94  Q
    |||||||| |||||||||||  |||  |||||||||||||||||||||||||    
T  13155453 gcatccccttcacgtaaccattgcatccgagactgttgccaacaaatactag 13155402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 20397780 - 20397835
Alignment:
Q  70 cgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctga 125  Q
    |||||||| |||||||||||||||| |||||| |||||||| ||| |||| |||||    
T  20397780 cgagactgctgccaacaaatactagtattaaggcgggacaaggaaagaatgtctga 20397835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 8811539 - 8811490
Alignment:
Q  43 gcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatact 92  Q
    |||||||| ||||| |||||  ||| ||||||||||||||||||||||||    
T  8811539 gcatccccttcacgcaaccactgcaatcgagactgttgccaacaaatact 8811490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 47421019 - 47421071
Alignment:
Q  70 cgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatc 122  Q
    |||||||| |||||||||||||| | |||||||||||| | ||| ||||||||    
T  47421019 cgagactgctgccaacaaatacttgtattaagacgggatagagagtgaatatc 47421071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 13442237 - 13442449
Alignment:
Q  34 ttcgagtttgcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctgatgatatgc 133  Q
    |||||||| ||||| |||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||  || |    
T  13442237 ttcgagttagcatcaccatcactcaaccaacgcactcgagactgctgccaacaaatactagcattaagacgggacaaagattgaatatctgttgcaatac 13442336  T
Q  134 ttcgcacctcatcatactcaccttcagacaacaactcgccttcgcctttcccatctaactctgccaacctatccttcagagcgattatctttcctggtaa 233  Q
      |||| |||| || ||||| | |||||||||||||||||||| || ||| |||||||||| |||||||| ||||||| |||| | ||||| ||| ||||    
T  13442337 cacgcatctcaacacactcaacatcagacaacaactcgccttctcccttcgcatctaactccgccaacctgtccttcaaagcggtaatcttacctcgtaa 13442436  T
Q  234 gttttgagtatgg 246  Q
    |||||||||||||    
T  13442437 gttttgagtatgg 13442449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 45994791 - 45994834
Alignment:
Q  70 cgagactgttgccaacaaatactagcattaagacgggacaaaga 113  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  45994791 cgagactgttgccaacaaatgctagtattaagacgggacaaaga 45994834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 17722856 - 17722911
Alignment:
Q  76 tgttgccaacaaatactagcattaagacgggacaaagaatgaatatctgatgatat 131  Q
    ||||||||||||||||| |  |||||||| ||||||||||||||||| || |||||    
T  17722856 tgttgccaacaaatacttgtgttaagacgagacaaagaatgaatatccgacgatat 17722911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 4936053 - 4936001
Alignment:
Q  70 cgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatc 122  Q
    |||||||| |||||||||||||| | |||||||||||| | ||| ||||||||    
T  4936053 cgagactgctgccaacaaatacttgtattaagacgggatagagagtgaatatc 4936001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 15676011 - 15676193
Alignment:
Q  34 ttcgagtttgcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaatatctgatgatatgc 133  Q
    ||||| || ||||| |||||||| | |||  |||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||  |  || |    
T  15676011 ttcgaattggcatcaccatcacgcagccactgcactcgagattgttgccaacaaatactagcattaagacaggacaaagattgaatatctgtcgcaatac 15676110  T
Q  134 ttcgcacctcatcatactcaccttcagacaacaactcgccttcgcctttcccatctaactctgccaacctatccttcagagcg 216  Q
    | |||| ||||||| ||||| | |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  15676111 tgcgcaactcatcacactcaacatcagacaacaactcgccttctcctttcccatctaactccgccaatctatccttcagagcg 15676193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 6051428 - 6051504
Alignment:
Q  43 gcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaat 119  Q
    ||||| || ||||| |||||| | || ||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  6051428 gcatctccttcacgcaaccaatgaacccgagactgttgccaacaaatactagtattaagacgggacaaggaaagaat 6051504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 42928920 - 42928966
Alignment:
Q  76 tgttgccaacaaatactagcattaagacgggacaaagaatgaatatc 122  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||||||    
T  42928920 tgttgccaacaaatacttgtattaagacgagacaaggaatgaatatc 42928966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 33171846 - 33171922
Alignment:
Q  43 gcatccccatcacgtaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagaatgaat 119  Q
    ||||| |||||||||| ||||  || ||  || ||||||||||||||||||| ||| ||||| ||||| ||||||||    
T  33171846 gcatcgccatcacgtagccaaatcaatctcgattgttgccaacaaatactagtattgagacgagacaacgaatgaat 33171922  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 13417883 - 13417929
Alignment:
Q  79 tgccaacaaatactagcattaagacgggacaaagaatgaatatctga 125  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  13417883 tgccaacatatactagtattaagacgggacaaagaatggatatctga 13417929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 10620585 - 10620536
Alignment:
Q  73 gactgttgccaacaaatactagcattaagacgggacaaagaatgaatatc 122  Q
    ||||| |||||||||||||||| |||||||||||||||||| || |||||    
T  10620585 gactgctgccaacaaatactagtattaagacgggacaaagagtgtatatc 10620536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 8132197 - 8132239
Alignment:
Q  79 tgccaacaaatactagcattaagacgggacaaagaatgaatat 121  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||    
T  8132197 tgccaacaaatactagtattaagacgggacaacgaatggatat 8132239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 16186528 - 16186577
Alignment:
Q  73 gactgttgccaacaaatactagcattaagacgggacaaagaatgaatatc 122  Q
    |||||||||||||| || |||| ||||||||| |||||||| ||||||||    
T  16186528 gactgttgccaacagatgctagtattaagacgcgacaaagagtgaatatc 16186577  T

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