View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_267 (Length: 246)
Name: NF6876A_low_267
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_267 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 37705459 - 37705229
Alignment:
| Q |
16 |
acatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
37705459 |
acatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaacccacgagttgagtat |
37705360 |
T |
|
| Q |
116 |
cgatatccgatgacatctgatactttttctttttatatgctcaatgcattttcttttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatt |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37705359 |
cgatatccgatggcatctgatactttttctttttatatgctcaatgcattttcttttgtgctgtaacaaactttgaagaaattataaatttaaagaaatt |
37705260 |
T |
|
| Q |
216 |
tttgtagtttagttaagaaccatacaaaaaa |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37705259 |
tttgtagtttagttaagaaccatacaaaaaa |
37705229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 37438116 - 37437931
Alignment:
| Q |
61 |
tccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaat |
160 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||| | |
|
|
| T |
37438116 |
tccatgatgaaccgcttataaaggtggtttacagtagaactcaatagtagagtatcgatatcatatgacacttaatactttttctttttatatgctcagt |
37438017 |
T |
|
| Q |
161 |
gcattttcttttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagtttagttaagaaccatacaaaaaa |
246 |
Q |
| |
|
|||||||||| |||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37438016 |
gcattttcttatgtgctataataagctttgaggaaattataaatttaaagaaatttttgtagtttagttaagaaccatagaaaaaa |
37437931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 37700753 - 37700646
Alignment:
| Q |
63 |
catgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaatgc |
162 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||| |||||| ||| |
|
|
| T |
37700753 |
catgatgaaccacttataaaagtggtctacggtagaactcacgagtagagtatcaatatccgatgacacttaatatgttttctttttatgtgctcagtgc |
37700654 |
T |
|
| Q |
163 |
attttctt |
170 |
Q |
| |
|
|||||||| |
|
|
| T |
37700653 |
attttctt |
37700646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 16840622 - 16840796
Alignment:
| Q |
71 |
accaattataaaggtggtctaccgtagaactcacgagtagagtatcga-tatccgatgacatctgatactttttctttttatatgctcaatgcattttct |
169 |
Q |
| |
|
|||| ||||||| ||||| ||| |||||||||||||||||||||| | |||| |||||| | |||||||||||||||||||||| | | |||||||| |
|
|
| T |
16840622 |
accacttataaaagtggtttactttagaactcacgagtagagtatcaaatatcttatgacacttaatactttttctttttatatgcttagtacattttct |
16840721 |
T |
|
| Q |
170 |
tttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagtttagttaagaaccatacaaaa |
244 |
Q |
| |
|
| | || | |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
16840722 |
tatttgttataacaaactttgaataaattatagatttaaagaaatttttgtagtttagttaaaaactataaaaaa |
16840796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 8265959 - 8266027
Alignment:
| Q |
179 |
taacaaactttgaaaaaattataaatttaaagaaatt-tttgtagtttagttaagaaccatacaaaaaa |
246 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| | ||||||| ||||||||| ||||| ||||| |
|
|
| T |
8265959 |
taacaaaatttgagaaaattataaatttaaagaaattgtatgtagttaagttaagaatcatacgaaaaa |
8266027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 21595127 - 21595162
Alignment:
| Q |
179 |
taacaaactttgaaaaaattataaatttaaagaaat |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21595127 |
taacaaactttgaaaaaattatgaatttaaagaaat |
21595162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 2125168 - 2125101
Alignment:
| Q |
179 |
taacaaactttgaaaaaattataaatttaaagaaatttttgt-agtttagttaagaaccatacaaaaa |
245 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| | || | |||||||||||||||||| |||| |
|
|
| T |
2125168 |
taacaaactttgagaaaattataaatttaaaaaaatcatggtgaatttagttaagaaccatacgaaaa |
2125101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University