View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_268 (Length: 246)
Name: NF6876A_low_268
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_268 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34043012 - 34042787
Alignment:
| Q |
1 |
attacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcctcgagagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34043012 |
attacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcatcactcctcgagagct |
34042913 |
T |
|
| Q |
101 |
gaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaacacaaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042912 |
gaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaacacaaagc |
34042813 |
T |
|
| Q |
201 |
gggagaagaatctaacacaacggaac |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34042812 |
gggagaagaatctaacacaacggaac |
34042787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4046201 - 4046366
Alignment:
| Q |
1 |
attacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcctcgagagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| || |
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| T |
4046201 |
attacctccagattcaatttgtgctgcgatttgaaaagattgaaatagttcatcacaaggtacggaataaatgaatcaggatcatcactcctcgagaact |
4046300 |
T |
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| Q |
101 |
gaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataa |
166 |
Q |
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||||||||||||||||||||||| |||| ||||||||| |||| |||||||| ||||||| |||| |
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| T |
4046301 |
gaatgtaacaaaaaatcagcacagcaaccatatgattcagaaactaaatcaactacaaattgataa |
4046366 |
T |
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