View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_271 (Length: 246)
Name: NF6876A_low_271
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_271 |
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| [»] chr7 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 36724252 - 36724367
Alignment:
| Q |
131 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
230 |
Q |
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| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
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| Q |
231 |
attatcaaattgaagg |
246 |
Q |
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| T |
36724352 |
attatcaaattgaagg |
36724367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 36723764 - 36723895
Alignment:
| Q |
13 |
atcatcataggcgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagtttt |
112 |
Q |
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| T |
36723764 |
atcatcataggtgtgagagctagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagtttt |
36723863 |
T |
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| Q |
113 |
gaaatctactatgaaataactgtctacaagca |
144 |
Q |
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| T |
36723864 |
gaaatctactatgaaataactgtctacaagca |
36723895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 712314 - 712157
Alignment:
| Q |
89 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
188 |
Q |
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| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
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| Q |
189 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaagg |
246 |
Q |
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| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaagg |
712157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 246
Target Start/End: Complemental strand, 717577 - 717367
Alignment:
| Q |
37 |
attatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagttttgaaatctactatgaaataactgt |
135 |
Q |
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| T |
717577 |
attatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgt |
717478 |
T |
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| Q |
136 |
ctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgtattat |
235 |
Q |
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| T |
717477 |
ctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttcttagagtctagagctaaatctacattat |
717378 |
T |
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| Q |
236 |
caaattgaagg |
246 |
Q |
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| T |
717377 |
caaattgaagg |
717367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 14541248 - 14541091
Alignment:
| Q |
89 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
188 |
Q |
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| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
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| Q |
189 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaagg |
246 |
Q |
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| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaagg |
14541091 |
T |
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