View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_273 (Length: 246)

Name: NF6876A_low_273
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_273
NF6876A_low_273
[»] chr2 (5 HSPs)
chr2 (91-235)||(19103376-19103520)
chr2 (91-230)||(32131270-32131407)
chr2 (1-65)||(19103286-19103350)
chr2 (91-217)||(22021296-22021421)
chr2 (138-227)||(26406590-26406678)
[»] scaffold1024 (2 HSPs)
scaffold1024 (91-227)||(1994-2130)
scaffold1024 (4-54)||(1908-1958)
[»] chr3 (8 HSPs)
chr3 (91-231)||(18385306-18385447)
chr3 (91-231)||(33623995-33624134)
chr3 (132-192)||(36030330-36030390)
chr3 (1-65)||(36030442-36030506)
chr3 (4-54)||(33624171-33624221)
chr3 (4-54)||(18385479-18385529)
chr3 (143-218)||(21630223-21630298)
chr3 (187-231)||(27538910-27538954)
[»] chr1 (8 HSPs)
chr1 (91-231)||(11868394-11868534)
chr1 (143-230)||(47399216-47399303)
chr1 (143-230)||(21345476-21345563)
chr1 (143-230)||(39199258-39199345)
chr1 (1-65)||(11868560-11868624)
chr1 (173-230)||(46806506-46806563)
chr1 (152-231)||(16044792-16044871)
chr1 (187-231)||(32924910-32924954)
[»] chr7 (8 HSPs)
chr7 (92-233)||(34357877-34358018)
chr7 (132-233)||(22980558-22980659)
chr7 (138-230)||(22994212-22994303)
chr7 (138-230)||(20605209-20605300)
chr7 (194-228)||(42829411-42829445)
chr7 (164-216)||(7324326-7324378)
chr7 (176-230)||(26715426-26715479)
chr7 (188-216)||(11070064-11070092)
[»] chr6 (5 HSPs)
chr6 (143-230)||(22459911-22459998)
chr6 (91-230)||(21709297-21709434)
chr6 (138-230)||(13546964-13547055)
chr6 (146-231)||(18739531-18739616)
chr6 (138-178)||(14732545-14732585)
[»] chr5 (2 HSPs)
chr5 (92-191)||(33950828-33950927)
chr5 (91-230)||(22128182-22128318)
[»] scaffold0597 (1 HSPs)
scaffold0597 (91-227)||(6830-6964)
[»] scaffold0454 (1 HSPs)
scaffold0454 (138-230)||(13896-13987)
[»] scaffold0221 (1 HSPs)
scaffold0221 (163-227)||(10959-11023)
[»] chr8 (3 HSPs)
chr8 (143-212)||(44549345-44549414)
chr8 (187-231)||(27916803-27916847)
chr8 (187-231)||(27963222-27963266)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 19103376 - 19103520
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    |||||||||  |||||||||| |||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19103376 gagggtattgacctagtcccctctcttttgtacaaatttttcctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 19103475  T
Q  191 ggatgccaacctagttgggatgtttcagcttctccctgatgtcca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19103476 ggatgccaacctagttgggatgtttcagcttctccctgatgtcca 19103520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 32131407 - 32131270
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    ||||||||| ||||||||||||||| |||||| |       |||||  ||| |||||||| |||||||| | ||||||| | |||||||||| || ||||    
T  32131407 gagggtattggcctagtcccccctcctttgtacagttttc-ccttttattattaatattactacgtatt-gagaggcggtacaggatgggagctgctgtt 32131310  T
Q  191 ggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    || |||||||||||||||||||||||||||||||||||||    
T  32131309 gggtgccaacctagttgggatgtttcagcttctccctgat 32131270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19103286 - 19103350
Alignment:
Q  1 taaagacagaaatgggcttcctagttatagatcctcgtagccatttctagtcttattagtttctg 65  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  19103286 taaagacagaaatgagcttcctaattatagattctcgtagccatttctagtctttttagtttctg 19103350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 22021421 - 22021296
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    ||||||||| ||||||||||||||| |||||| |       | |||||||||||||||||||| |||| ||| |||||| | |||||||||| | |||||    
T  22021421 gagggtattggcctagtcccccctcctttgtacatatttt-cttttctttaataatattattatgtatcaggaaggcggtagaggatgggagttattgtt 22021323  T
Q  191 ggatgccaacctagttgggatgtttca 217  Q
    || ||||||||||||||||||| ||||    
T  22021322 gggtgccaacctagttgggatgcttca 22021296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 26406590 - 26406678
Alignment:
Q  138 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccct 227  Q
    |||| |||||||||||||||||||| | || | ||||||| |||| |||||  || ||||||| ||||||||||| |||| | |||||||    
T  26406590 tttattaatattattacgtattaggaatgcagtaaaggataggagttgttg-ggggtgccaacttagttgggatgcttcaacctctccct 26406678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 1994 - 2130
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    ||||||||| |||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1994 gagggtattggcctagtcccccctcttttgtacagatttttcctttctttaataatattattacgtattagggaggcgacaaaggatgggaggtgttgtt 2093  T
Q  191 ggatgccaacctagttgggatgtttcagcttctccct 227  Q
    |  ||||||||||||||||||||||||||||||||||    
T  2094 gcgtgccaacctagttgggatgtttcagcttctccct 2130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 1908 - 1958
Alignment:
Q  4 agacagaaatgggcttcctagttatagatcctcgtagccatttctagtctt 54  Q
    |||||||||||||||||||| || ||||| ||| |||||||||||||||||    
T  1908 agacagaaatgggcttcctaattttagattctcttagccatttctagtctt 1958  T

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Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 18385447 - 18385306
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnnccttt-ctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgt 189  Q
    ||||||||| |||||||||||||||||||||| |        |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  18385447 gagggtattggcctagtcccccctcttttgtacatattttttcttttctttaataatattattacgtattaggaaggcgacaaaggatgggaggtgttgt 18385348  T
Q  190 tggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  18385347 tgggtgccaacctagttgggatgtttcagcttctccctgatg 18385306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 33624134 - 33623995
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    ||||||||| |||||||||| ||||||||||| |       ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||    
T  33624134 gagggtattggcctagtccctcctcttttgtacatatttt-cctttctttaatattattattacgtattagggagacgacaaaggatgggaggtgttgtt 33624036  T
Q  191 ggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    || |||||||||| ||| |||||||||||||||||||||||    
T  33624035 gggtgccaacctaattgagatgtttcagcttctccctgatg 33623995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 36030390 - 36030330
Alignment:
Q  132 cctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttgg 192  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  36030390 cctttctttaatagtattattacgtattagggaggcggctaaggatgagaggtgctgttgg 36030330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36030506 - 36030442
Alignment:
Q  1 taaagacagaaatgggcttcctagttatagatcctcgtagccatttctagtcttattagtttctg 65  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||||  ||| ||||||||||    
T  36030506 taaaggcagaaatgggcttcctaattatagattctcgtagccatttctaacctttttagtttctg 36030442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 33624221 - 33624171
Alignment:
Q  4 agacagaaatgggcttcctagttatagatcctcgtagccatttctagtctt 54  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||    
T  33624221 agacagaaatgggcttcctaattttagattctcgtagccatttctagtctt 33624171  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 18385529 - 18385479
Alignment:
Q  4 agacagaaatgggcttcctagttatagatcctcgtagccatttctagtctt 54  Q
    |||||||||| ||||||||| || ||||| |||||||||||||||||||||    
T  18385529 agacagaaataggcttcctaattttagattctcgtagccatttctagtctt 18385479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 21630223 - 21630298
Alignment:
Q  143 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcag 218  Q
    ||||| ||||||||||| |  |||||| | |||||||| | |  |||||||||||||||||||||||||| |||||    
T  21630223 taataatattacgtattggaaaggcggtagaggatgggggtttatgttggatgccaacctagttgggatgcttcag 21630298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 27538954 - 27538910
Alignment:
Q  187 tgttggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    |||||||||||||||||||| ||||| ||||| ||||||| ||||    
T  27538954 tgttggatgccaacctagtttggatgcttcagattctcccggatg 27538910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 11868534 - 11868394
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    ||||||||| |||||||||||||||||||||| |       |||| |||||||||||||||||||||||||| ||||| ||||||||| ||| || ||||    
T  11868534 gagggtattggcctagtcccccctcttttgtacaaatatttccttactttaataatattattacgtattaggaaggcgacaaaggatgagagttgctgtt 11868435  T
Q  191 ggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  11868434 ggatgccaacctagttgggatgtttaagcttctccctgatg 11868394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 47399303 - 47399216
Alignment:
Q  143 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    ||||| ||||||||||||| ||||||  |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  47399303 taataatattacgtattagagaggcgctaaaggatgggagttgctgttgggtgccaacctagttgggatgtttcagcttctccctgat 47399216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 21345563 - 21345476
Alignment:
Q  143 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    ||||| ||||||||||||| |||| || |||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||    
T  21345563 taataatattacgtattagagaggtggtaaaggatgggagttactgttgggtgccaacctagttgggatgtttcagcttctccctgat 21345476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 39199258 - 39199345
Alignment:
Q  143 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    ||||| ||||||||||||| ||||||  |||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||    
T  39199258 taataatattacgtattagagaggcgataaaggatgggagttgctgttgggtgccaacctagttgggatgtttcagcttctccgtgat 39199345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11868624 - 11868560
Alignment:
Q  1 taaagacagaaatgggcttcctagttatagatcctcgtagccatttctagtcttattagtttctg 65  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||| ||||||| ||||||||||    
T  11868624 taaagacataaatgggcttcctaattatagattctcgtagccatttatagtctttttagtttctg 11868560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 46806506 - 46806563
Alignment:
Q  173 aggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    |||||||||| || |||||| |||||| ||||||||||||||||||||||||| ||||    
T  46806506 aggatgggagctgctgttgggtgccaatctagttgggatgtttcagcttctccttgat 46806563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 16044792 - 16044871
Alignment:
Q  152 tacgtattagggaggcggcaaaggatgggaggtgt-tgttggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    ||||||||||  |||||| | ||||||| |||||| |||||| |||||||||||||||||| ||||||  |||||| ||||    
T  16044792 tacgtattagaaaggcggtagaggatgg-aggtgtctgttgggtgccaacctagttgggatctttcagactctcccggatg 16044871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 32924954 - 32924910
Alignment:
Q  187 tgttggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    |||||| ||||||||||||||||||| ||||| ||||||| ||||    
T  32924954 tgttgggtgccaacctagttgggatgcttcagattctcccggatg 32924910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 34358018 - 34357877
Alignment:
Q  92 agggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttg 191  Q
    |||||||| |||||||||||||||||||||| |       |||||||||||||||||||||||||||||| ||| ||||| |||||||||| |  |||||    
T  34358018 agggtattggcctagtcccccctcttttgtacagatttttcctttctttaataatattattacgtattagtgagtcggcagaggatgggagataatgttg 34357919  T
Q  192 gatgccaacctagttgggatgtttcagcttctccctgatgtc 233  Q
    | || |||||||||||| ||||||||||||||||||||||||    
T  34357918 ggtgtcaacctagttggaatgtttcagcttctccctgatgtc 34357877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 22980659 - 22980558
Alignment:
Q  132 cctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||  ||| || |||||| ||||||||||||||||||||||||| ||||||||||||    
T  22980659 cctttctttaataatattattacgtattagggtggcggcagaggataagagttgatgttgggtgccaacctagttgggatgtttcagtttctccctgatg 22980560  T
Q  232 tc 233  Q
    ||    
T  22980559 tc 22980558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 22994303 - 22994212
Alignment:
Q  138 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    |||| |||||||| |||||||| | ||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22994303 tttattaatattactacgtatt-gagaggcggtacaggatgggagctgttgttgggtgccaacctagttgggatgtttcagcttctccctgat 22994212  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 20605209 - 20605300
Alignment:
Q  138 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    |||| |||||||| | |||||| | ||||||| | |||||||||| || |||||  |||||||||||||||||||||||||||||||||||||    
T  20605209 tttattaatattactgcgtatt-gagaggcggtacaggatgggagctgctgttgtgtgccaacctagttgggatgtttcagcttctccctgat 20605300  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 42829411 - 42829445
Alignment:
Q  194 tgccaacctagttgggatgtttcagcttctccctg 228  Q
    |||||||||||||||||||||||||||||||||||    
T  42829411 tgccaacctagttgggatgtttcagcttctccctg 42829445  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 7324326 - 7324378
Alignment:
Q  164 aggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttc 216  Q
    |||||| | |||||||||| | | |||||||||||||||||||||||||||||    
T  7324326 aggcggtagaggatgggagctctagttggatgccaacctagttgggatgtttc 7324378  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 26715426 - 26715479
Alignment:
Q  176 atgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    ||||||| || |||||| ||||||||||||||  |||||||||||||||||||||    
T  26715426 atgggagctgctgttgggtgccaacctagttga-atgtttcagcttctccctgat 26715479  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 11070064 - 11070092
Alignment:
Q  188 gttggatgccaacctagttgggatgtttc 216  Q
    |||||||||||||||||||||||||||||    
T  11070064 gttggatgccaacctagttgggatgtttc 11070092  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 22459911 - 22459998
Alignment:
Q  143 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    ||||| ||||||||||||| ||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22459911 taataatattacgtattagagaggcggtaaagaatgggagttgttgttgggtgccaacctagttgggatgtttcagcttctccctgat 22459998  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 21709434 - 21709297
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    ||||||||| ||||||||||||||| |||||| |       ||||| |||| |||||||| |||||| | | |||||||   |||||||||| || ||||    
T  21709434 gagggtattggcctagtcccccctcctttgtacagttttccccttt-tttattaatattactacgtaat-gagaggcggttcaggatgggagctgctgtt 21709337  T
Q  191 ggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    || |||||||||||||||||||||||||||||||||||||    
T  21709336 gggtgccaacctagttgggatgtttcagcttctccctgat 21709297  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 13546964 - 13547055
Alignment:
Q  138 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    ||||||||||||| |||||||||| ||||||  |||| |||| || ||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  13546964 tttaataatattactacgtattagagaggcgttaaagaatggaagttgttgttgggtgc-aacctagttgggatgtttcagcttctccatgat 13547055  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 18739616 - 18739531
Alignment:
Q  146 tattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    ||||||||||||||||| |||||| | |||||| ||| ||||||||| |||||| |||||||| ||| |||| | ||| |||||||    
T  18739616 tattattacgtattaggaaggcggtagaggatgagagttgttgttgggtgccaatctagttggaatgcttcaacctcttcctgatg 18739531  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 14732585 - 14732545
Alignment:
Q  138 tttaataatattattacgtattagggaggcggcaaaggatg 178  Q
    |||||||||||||||||||||| | ||||||||| ||||||    
T  14732585 tttaataatattattacgtattcgagaggcggcagaggatg 14732545  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 33950927 - 33950828
Alignment:
Q  92 agggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttg 191  Q
    |||||||| |||| ||||||| ||||||||| |       |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33950927 agggtattggcctggtcccccttcttttgtacagatttttcctttctttaataatattattatgtattagggaggcggcaaaggatgggaggtgttgttg 33950828  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 22128182 - 22128318
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    ||||||||| ||||||||||||||| |||||| |       || || |||||||||||||    ||||||| |||| || ||| |||||||| || ||||    
T  22128182 gagggtattggcctagtcccccctcctttgtacagttttcccccttttttaataatattaa---gtattagagaggtggtaaatgatgggagttgctgtt 22128278  T
Q  191 ggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    || |||||||||||||||||||||||||||||||||||||    
T  22128279 gggtgccaacctagttgggatgtttcagcttctccctgat 22128318  T

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Target: scaffold0597 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 6964 - 6830
Alignment:
Q  91 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 190  Q
    ||||||||| ||||||||||||||| |||||| |       ||||| |||  ||||| ||||||||||||| |||| || |||||||||||| || ||||    
T  6964 gagggtattggcctagtcccccctcctttgtacaatttttcccttttttt--taataatattacgtattagagaggtggtaaaggatgggagttgctgtt 6867  T
Q  191 ggatgccaacctagttgggatgtttcagcttctccct 227  Q
    |  ||||||||||||||||||||||||||||||||||    
T  6866 gcgtgccaacctagttgggatgtttcagcttctccct 6830  T

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Target: scaffold0454 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 13987 - 13896
Alignment:
Q  138 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 230  Q
    |||| |||||||| |||||||| | ||||||| | |||||||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  13987 tttattaatattactacgtatt-gagaggcggtacaggatgggagctgctgttgggtgccaacctagttgggatgtttcagcttctccctgat 13896  T

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Target: scaffold0221 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 11023 - 10959
Alignment:
Q  163 gaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccct 227  Q
    ||||||| ||| |||| ||| || |||||| ||||||||||||||||||||||||| ||||||||    
T  11023 gaggcggtaaatgatgagagttgctgttgggtgccaacctagttgggatgtttcagtttctccct 10959  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 44549414 - 44549345
Alignment:
Q  143 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatg 212  Q
    ||||| ||||| ||||| || |||||| | |||||||||| |  |||||| |||||||||||||||||||    
T  44549414 taataatattatgtattgggaaggcggtagaggatgggagtttctgttgggtgccaacctagttgggatg 44549345  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 27916803 - 27916847
Alignment:
Q  187 tgttggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    |||||| ||||||||||||||||||| ||||| ||||||| ||||    
T  27916803 tgttgggtgccaacctagttgggatgcttcagtttctcccggatg 27916847  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 27963222 - 27963266
Alignment:
Q  187 tgttggatgccaacctagttgggatgtttcagcttctccctgatg 231  Q
    |||||| ||||||||||||||||||| ||||| ||||||| ||||    
T  27963222 tgttgggtgccaacctagttgggatgcttcagtttctcccggatg 27963266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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