View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_279 (Length: 245)

Name: NF6876A_low_279
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_279
NF6876A_low_279
[»] chr5 (15 HSPs)
chr5 (91-221)||(10180626-10180756)
chr5 (15-86)||(1598745-1598816)
chr5 (15-85)||(5812621-5812691)
chr5 (15-84)||(39565300-39565369)
chr5 (15-84)||(40830469-40830538)
chr5 (15-84)||(16478169-16478238)
chr5 (27-84)||(22497057-22497114)
chr5 (24-84)||(22387012-22387072)
chr5 (9-86)||(22721385-22721462)
chr5 (9-85)||(36789768-36789844)
chr5 (9-85)||(16475571-16475647)
chr5 (9-84)||(25336051-25336126)
chr5 (9-84)||(28969629-28969704)
chr5 (9-84)||(1212759-1212834)
chr5 (9-84)||(23107612-23107687)
[»] chr6 (9 HSPs)
chr6 (91-221)||(18877551-18877681)
chr6 (16-85)||(22510272-22510341)
chr6 (15-85)||(18903215-18903285)
chr6 (15-85)||(19420186-19420256)
chr6 (16-84)||(19420587-19420655)
chr6 (9-84)||(14175405-14175480)
chr6 (9-84)||(14179941-14180016)
chr6 (9-84)||(4271699-4271774)
chr6 (91-137)||(18882425-18882472)
[»] chr3 (19 HSPs)
chr3 (91-221)||(33518954-33519084)
chr3 (15-85)||(37964780-37964850)
chr3 (15-84)||(28418445-28418514)
chr3 (15-79)||(33955902-33955966)
chr3 (15-85)||(4066794-4066864)
chr3 (18-86)||(33957280-33957348)
chr3 (15-84)||(3345024-3345093)
chr3 (15-79)||(23302855-23302919)
chr3 (15-86)||(22397812-22397883)
chr3 (18-84)||(23302204-23302270)
chr3 (9-84)||(44516932-44517007)
chr3 (9-85)||(10122767-10122843)
chr3 (9-85)||(43844790-43844866)
chr3 (9-84)||(38190545-38190620)
chr3 (9-84)||(54610147-54610222)
chr3 (9-79)||(30106653-30106723)
chr3 (9-85)||(26706202-26706278)
chr3 (9-84)||(1003099-1003174)
chr3 (9-84)||(35350891-35350966)
[»] chr7 (14 HSPs)
chr7 (91-221)||(39063681-39063811)
chr7 (15-85)||(21954258-21954328)
chr7 (15-85)||(46804755-46804825)
chr7 (15-84)||(6612647-6612716)
chr7 (15-84)||(42049298-42049367)
chr7 (15-79)||(34643900-34643964)
chr7 (15-86)||(47400845-47400916)
chr7 (9-85)||(18784695-18784771)
chr7 (9-85)||(35113342-35113418)
chr7 (9-85)||(44045635-44045711)
chr7 (9-84)||(37316167-37316242)
chr7 (9-86)||(35504825-35504902)
chr7 (9-86)||(42046583-42046660)
chr7 (9-84)||(19297223-19297299)
[»] chr1 (18 HSPs)
chr1 (15-86)||(43643263-43643334)
chr1 (15-85)||(28645871-28645941)
chr1 (15-85)||(42829948-42830018)
chr1 (15-84)||(2023039-2023108)
chr1 (15-84)||(24775445-24775514)
chr1 (15-84)||(45536866-45536935)
chr1 (15-86)||(21332939-21333010)
chr1 (15-88)||(32524066-32524139)
chr1 (15-84)||(38984638-38984707)
chr1 (15-84)||(49004874-49004943)
chr1 (15-86)||(18410215-18410286)
chr1 (9-84)||(20274402-20274477)
chr1 (26-84)||(2840351-2840409)
chr1 (9-86)||(13496520-13496597)
chr1 (9-86)||(42435649-42435726)
chr1 (91-137)||(39623193-39623240)
chr1 (9-84)||(24455392-24455467)
chr1 (9-84)||(32049744-32049819)
[»] scaffold0368 (1 HSPs)
scaffold0368 (15-85)||(10004-10074)
[»] chr2 (8 HSPs)
chr2 (15-84)||(6904285-6904354)
chr2 (15-87)||(3555066-3555138)
chr2 (15-84)||(4720950-4721019)
chr2 (15-84)||(40263416-40263485)
chr2 (15-84)||(4651531-4651600)
chr2 (9-86)||(12256739-12256816)
chr2 (9-85)||(42843101-42843177)
chr2 (38-85)||(42224049-42224096)
[»] chr8 (14 HSPs)
chr8 (15-79)||(9220025-9220089)
chr8 (15-86)||(6416572-6416643)
chr8 (15-86)||(39622194-39622265)
chr8 (15-85)||(18385695-18385765)
chr8 (15-84)||(12501764-12501833)
chr8 (9-84)||(13279831-13279906)
chr8 (9-84)||(16428147-16428222)
chr8 (15-85)||(31726195-31726266)
chr8 (15-79)||(16888874-16888937)
chr8 (9-85)||(33441347-33441423)
chr8 (9-85)||(40557395-40557471)
chr8 (18-85)||(29089209-29089276)
chr8 (9-84)||(36896642-36896717)
chr8 (15-85)||(22513812-22513882)
[»] chr4 (13 HSPs)
chr4 (15-85)||(48425925-48425995)
chr4 (15-84)||(5943856-5943925)
chr4 (15-84)||(25887402-25887471)
chr4 (18-85)||(36353293-36353360)
chr4 (15-69)||(34802059-34802113)
chr4 (15-75)||(48945124-48945184)
chr4 (9-84)||(27071017-27071092)
chr4 (9-84)||(27151103-27151178)
chr4 (28-78)||(27024618-27024668)
chr4 (9-86)||(4943172-4943249)
chr4 (9-86)||(9768676-9768753)
chr4 (24-84)||(6243528-6243588)
chr4 (9-84)||(7509449-7509524)
[»] scaffold0088 (4 HSPs)
scaffold0088 (15-86)||(10641-10712)
scaffold0088 (17-75)||(1356-1414)
scaffold0088 (17-75)||(8746-8804)
scaffold0088 (17-75)||(25241-25299)
[»] scaffold0009 (1 HSPs)
scaffold0009 (15-86)||(198991-199062)
[»] scaffold1289 (1 HSPs)
scaffold1289 (17-75)||(255-313)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 10180626 - 10180756
Alignment:
Q  91 tccattatttttcttctaatcacattttgcatccacttttcctattactaagtaaccgctacccactcttccattttcttataattaattagtaacagcc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  10180626 tccattatttttcttctaatcacattttgcatccacttttcctattactaagtaaccgttacccactcttccattttctcttaattaattagtaacagcc 10180725  T
Q  191 atcacatgaaaaatgttaatgctcttcaacg 221  Q
    |||||| |||||||||||||| |||||||||    
T  10180726 atcacacgaaaaatgttaatgttcttcaacg 10180756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 1598745 - 1598816
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1598745 tggacatcattagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagattt 1598816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 5812621 - 5812691
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5812621 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatt 5812691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 39565300 - 39565369
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39565300 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 39565369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 40830538 - 40830469
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40830538 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 40830469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 16478238 - 16478169
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  16478238 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 16478169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 22497057 - 22497114
Alignment:
Q  27 gaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22497057 gaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22497114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 22387012 - 22387072
Alignment:
Q  24 ttagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  22387012 ttagaggagaggattttggaataagctatttctaaaaactctaaattgttagtataaagat 22387072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 22721385 - 22721462
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  22721385 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagattt 22721462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 36789768 - 36789844
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| |||||    
T  36789768 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatt 36789844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 16475647 - 16475571
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||| |||||||| || | |||| | |||||||||||||| |||||||||||||||||||| |||||    
T  16475647 atgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagatt 16475571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 25336126 - 25336051
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| ||||| |||||||||| |||||||||||||||||||| ||||    
T  25336126 atgaggtggacatccttagaggaaaggaatttgaaatagactatttctaagaactctaaattgttagtataaagat 25336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 28969629 - 28969704
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||| | || | |||| | ||||||||||||||||||||||||||||||||||| ||||    
T  28969629 atgaggtggacatctttagagaaaaggaatttgaattaggctatttctaaaaactctaaattgttagtataaagat 28969704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 1212759 - 1212834
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| | |||||||||||||| ||||||| |||||||||||| ||||    
T  1212759 atgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctagattgttagtataaagat 1212834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 23107612 - 23107687
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| ||| |||| |||||||| || | |||| | |||||||||||||| |||||||||||||||||||| ||||    
T  23107612 atgaggtgggcatccttagaggaaaggaatttgaactaggctatttctaagaactctaaattgttagtataaagat 23107687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 18877551 - 18877681
Alignment:
Q  91 tccattatttttcttctaatcacattttgcatccacttttcctattactaagtaaccgctacccactcttccattttcttataattaattagtaacagcc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||    
T  18877551 tccattatttttcttctaatcacattttgcatccacttttcctattactaagtaaccgttacccactcttccattttctcataattaattagtaaccgcc 18877650  T
Q  191 atcacatgaaaaatgttaatgctcttcaacg 221  Q
    ||||||  ||||||||||||| |||||||||    
T  18877651 atcacacaaaaaatgttaatgttcttcaacg 18877681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 22510341 - 22510272
Alignment:
Q  16 ggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22510341 ggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatt 22510272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 18903215 - 18903285
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  18903215 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatt 18903285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 19420186 - 19420256
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  19420186 tggacatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagatt 19420256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 19420655 - 19420587
Alignment:
Q  16 ggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  19420655 ggacatctttagaggagaggattttggaataagctatttctaaaaactctaaattattagtataaagat 19420587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 14175480 - 14175405
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  14175480 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 14175405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 14180016 - 14179941
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  14180016 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 14179941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 4271699 - 4271774
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| | |||||||||||||| |||||||||||||||||||| ||||    
T  4271699 atgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 4271774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 18882425 - 18882472
Alignment:
Q  91 tccattatttttcttctaat-cacattttgcatccacttttcctatta 137  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||    
T  18882425 tccattatttttcttctaattcgcattttgcatccacttttcctatta 18882472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 33519084 - 33518954
Alignment:
Q  91 tccattatttttcttctaatcacattttgcatccacttttcctattactaagtaaccgctacccactcttccattttcttataattaattagtaacagcc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||    
T  33519084 tccattatttttcttctaatcacattttgcatccacttttcctattactaagtaaccgttacccactcttccattttctcataattaattagtaaccgcc 33518985  T
Q  191 atcacatgaaaaatgttaatgctcttcaacg 221  Q
    ||||||  ||||||||||||| |||||||||    
T  33518984 atcacacaaaaaatgttaatgttcttcaacg 33518954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 37964850 - 37964780
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  37964850 tggacatctttagaggagagaattttggaataggctatttctaaaaactctaaattgttaatataaagatt 37964780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 28418445 - 28418514
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  28418445 tggacatctttagaggagagaattttggaatatgctatttctaaaaactctaaattgttagtataaagat 28418514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 33955902 - 33955966
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtata 79  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33955902 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtata 33955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 4066794 - 4066864
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  4066794 tggacatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttaatataaagatt 4066864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 33957280 - 33957348
Alignment:
Q  18 acatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33957280 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagattt 33957348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 3345024 - 3345093
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  3345024 tggacatctttagagaagaggattttggaataggctatttctaaaaactttaaattgttagtataaagat 3345093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 23302919 - 23302855
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtata 79  Q
    |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  23302919 tggacatctttagaggagaggattttagaataagctatttctaaaaactctaaattgttagtata 23302855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 22397883 - 22397812
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| |||||||| || |||||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  22397883 tggacatctttagaggaaaggattttgaaataagctatttctaaaaactctaaattgttagtataaagattt 22397812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 23302270 - 23302204
Alignment:
Q  18 acatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||    
T  23302270 acatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 23302204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 44516932 - 44517007
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  44516932 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 44517007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 10122767 - 10122843
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||||||||| ||| |||| || | |||  |||||||||||||||| |||||||||||||||||||| |||||    
T  10122767 atgagatggacatctttaaaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagatt 10122843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 43844866 - 43844790
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||| ||| |||||||||||||||||||| |||||    
T  43844866 atgaggtggacatccttagaggaaaggaatttgaaataggctatttgtaagaactctaaattgttagtataaagatt 43844790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 38190545 - 38190620
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||  |||||||||||||||| |||||||||||||||||||| ||||    
T  38190545 atgaggtggacatccttagaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 38190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 54610222 - 54610147
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||| ||| |||||||||||||||||||| ||||    
T  54610222 atgaggtggacatccttagaggaaaggaatttgaaataggctatttttaagaactctaaattgttagtataaagat 54610147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 30106723 - 30106653
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtata 79  Q
    ||||| |||| ||| |||||||| || | |||| |||||||||||||||| ||||||||||||||||||||    
T  30106723 atgaggtggatatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtata 30106653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 26706202 - 26706278
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||  |||||||| |||| |||  ||||| |||||||||| |||||||||||||||||||| |||||    
T  26706202 atgaggtggacattcttagaggaaagaaatttaaaatagactatttctaagaactctaaattgttagtataaagatt 26706278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 1003099 - 1003174
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||  |||||| | || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  1003099 atgaggtggacattcttagagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 1003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 35350891 - 35350966
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||  |||||| | || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  35350891 atgaggtggacatacttagagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 35350966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 39063811 - 39063681
Alignment:
Q  91 tccattatttttcttctaatcacattttgcatccacttttcctattactaagtaaccgctacccactcttccattttcttataattaattagtaacagcc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||    
T  39063811 tccattatttttcttctaatcacattttgcatccacttttcctattaataagtaaccgttacccactcttccattttctcataattaattagtaaccgcc 39063712  T
Q  191 atcacatgaaaaatgttaatgctcttcaacg 221  Q
    ||||||  ||||||||||||| |||||||||    
T  39063711 atcacacaaaaaatgttaatgttcttcaacg 39063681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 21954258 - 21954328
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21954258 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatt 21954328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 46804825 - 46804755
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46804825 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatt 46804755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 6612716 - 6612647
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  6612716 tggacatctttagaggagagaattttggaataggctatttctaaaaactctaaagtgttaatataaagat 6612647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 42049367 - 42049298
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  42049367 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 42049298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 34643900 - 34643964
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtata 79  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  34643900 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtata 34643964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 47400845 - 47400916
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  47400845 tggacatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagattt 47400916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 18784695 - 18784771
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| |||||    
T  18784695 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatt 18784771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 35113418 - 35113342
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| |||||    
T  35113418 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatt 35113342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 44045635 - 44045711
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| |||||    
T  44045635 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatt 44045711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 37316167 - 37316242
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  37316167 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 37316242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 35504902 - 35504825
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| |||||||| |||||||| || | |||| ||||||||||| |||| |||||||||||||||||||| ||||||    
T  35504902 atgaggtggacatccttagaggaaaggaatttgaaataggctattgctaagaactctaaattgttagtataaagattt 35504825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 42046660 - 42046583
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| |||||||| |||||||| || | |||| | |||||||||||||| |||||||||||||||||||| ||||||    
T  42046660 atgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagattt 42046583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 19297223 - 19297299
Alignment:
Q  9 atgagatggacatcattagaggagag-aattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| ||||||||||| ||| ||||||| |   |||| ||||||||||||| |||||||||| ||||    
T  19297223 atgaggtggacatctttagaggagaggaatcttggaatggtgcatttttaaaaactctaaaatgttagtataaagat 19297299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 43643263 - 43643334
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43643263 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagattt 43643334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 28645871 - 28645941
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28645871 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatt 28645941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 42829948 - 42830018
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  42829948 tggacatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagatt 42830018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 2023108 - 2023039
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2023108 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 2023039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 24775514 - 24775445
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24775514 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 24775445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 45536935 - 45536866
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45536935 tggacatctttagaggaaagaattttggaataggctatttctaaaaactctaaattgttagtataaagat 45536866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 21332939 - 21333010
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  21332939 tggacatctttagaggagaggattttggaatgggctatttctaaaaactctaaattgttagtataaagattt 21333010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 32524066 - 32524139
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatttta 88  Q
    |||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||||||||| ||||||||    
T  32524066 tggacatctttagaggagaggattttaaaataggctatttctaaaaactctaaattgttagtataaagatttta 32524139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 38984638 - 38984707
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  38984638 tggacatctttagaggagaggattttgaaataggctgtttctaaaaactctaaattgttagtataaagat 38984707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 49004943 - 49004874
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49004943 tggacgtctttagaggaaaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 49004874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 18410286 - 18410215
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| |||||||| || |||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  18410286 tggacatctttagaggaaaggattttgaaatagactatttctaaaaactctaaattgttagtataaagattt 18410215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 20274477 - 20274402
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||| ||||||||| |||||| | || ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  20274477 atgatatggacatctttagagtaaaggattttggaataagctatttctaaaaactctaaattgttagtataaagat 20274402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 2840409 - 2840351
Alignment:
Q  26 agaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  2840409 agaggagaggattttggaataggctgtttctaaaaactctaaattgttagtataaagat 2840351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 13496597 - 13496520
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| |||||||| |||||||| || | |||| |||||| ||||||||| |||||||||||||||||||| ||||||    
T  13496597 atgaggtggacatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagattt 13496520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 42435726 - 42435649
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| |||||||| |||||||| || | |||| | |||||||||||||| |||||||||||||||||||| ||||||    
T  42435726 atgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagattt 42435649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 39623193 - 39623240
Alignment:
Q  91 tccattatttttcttctaat-cacattttgcatccacttttcctatta 137  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  39623193 tccattatttttcttctaattcacattttgcatccacttttcctatta 39623240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 24455392 - 24455467
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||  ||||||||| |||||||||||||||||||| ||||    
T  24455392 atgaggtggacatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagat 24455467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 32049819 - 32049744
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| |  | |||  |||||||||||||||| |||||||||||||||||||| ||||    
T  32049819 atgaggtggacatccttagaggaaatgaatttaaaataggctatttctaagaactctaaattgttagtataaagat 32049744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 10004 - 10074
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  10004 tggacatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagatt 10074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 6904354 - 6904285
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  6904354 tggacatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 6904285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 3555066 - 3555138
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatttt 87  Q
    |||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  3555066 tggacatctttagaggagaggattttgaaataagctatttctaaaaactctaaattgttagtataaagatttt 3555138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 4720950 - 4721019
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||    
T  4720950 tggacatctttagaggagagaattttagaataagctatttctaaaaactctaaattcttagtataaagat 4721019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 40263485 - 40263416
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  40263485 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttattataaagat 40263416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 4651531 - 4651600
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||| ||||| || |||||||||||||||||||||||||||| ||||    
T  4651531 tggacatctttagaggagaggattttgaaatagactgtttctaaaaactctaaattgttagtataaagat 4651600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 12256739 - 12256816
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  12256739 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagattt 12256816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 42843101 - 42843177
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| |||||    
T  42843101 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatt 42843177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 42224096 - 42224049
Alignment:
Q  38 tttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  42224096 tttggaataagctatttctaaaaactttaaattgttagtataaagatt 42224049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 9220089 - 9220025
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtata 79  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9220089 tggacatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttagtata 9220025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 6416643 - 6416572
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  6416643 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagattt 6416572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 39622194 - 39622265
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39622194 tggacatctttagagaagaggattttggaataggctatttctaaaaactctaaattgttagtataaagattt 39622265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 18385695 - 18385765
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  18385695 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatt 18385765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 12501764 - 12501833
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||||    
T  12501764 tggacatttttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagcataaagat 12501833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 13279831 - 13279906
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||| | || | |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  13279831 atgaggtggacatccttagagcaaaggaatttgaaataggctatttctaaaaactctaaattgttagtataaagat 13279906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 16428222 - 16428147
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  16428222 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 16428147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 31726266 - 31726195
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttcta-aaaactctaaattgttagtatagagatt 85  Q
    |||||||| ||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  31726266 tggacatctttagacgagaggattttggaataagctatttctaaaaaactctaaattgttagtataaagatt 31726195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 16888874 - 16888937
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtata 79  Q
    |||||||| |||||||||||  ||||| |||| ||||||||||||||||||||||||||||||||    
T  16888874 tggacatctttagaggagagg-ttttgaaataagctatttctaaaaactctaaattgttagtata 16888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 33441423 - 33441347
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||| | |||||||| || | |||| |||| |||||||||||||||||||||||||||||||| |||||    
T  33441423 atgaggtggacacccttagaggaaaggaatttgaaataagctatttctaaaaactctaaattgttagtataaagatt 33441347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 40557471 - 40557395
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| |||||||| |||||||| || | |||| | |||||||||||||| |||||||||||||||||||| |||||    
T  40557471 atgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagatt 40557395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 29089209 - 29089276
Alignment:
Q  18 acatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| || |||||||| |||||||||||   |||||||||||||||||||||||||||||| |||||    
T  29089209 acatctttggaggagaggattttggaataaattatttctaaaaactctaaattgttagtataaagatt 29089276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 36896642 - 36896717
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||  ||||| ||||||||||||||||||||||||||||||| ||||    
T  36896642 atgaggtggacatccttagaggaaaggaatttaaaatagactatttctaaaaactctaaattgttagtataaagat 36896717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 22513882 - 22513812
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| |||||||| || | |||| | |||||||||||||| |||||||||||||||||||| |||||    
T  22513882 tggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagatt 22513812  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 48425995 - 48425925
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  48425995 tggacatctttagaggagagaattttgaaataggctatttctaaaaactctaaattgttaatataaagatt 48425925  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 5943925 - 5943856
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  5943925 tggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 5943856  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 25887471 - 25887402
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  25887471 tggacatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 25887402  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 36353293 - 36353360
Alignment:
Q  18 acatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagatt 85  Q
    ||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  36353293 acatctttagatgagagaattttgaaataggctatttttaaaaactctaaattgttagtataaagatt 36353360  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 34802113 - 34802059
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaat 69  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  34802113 tggacatctttagaggagaggattttggaataggctatttctaaaaactctaaat 34802059  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 48945184 - 48945124
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttag 75  Q
    |||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  48945184 tggacatctttaaaggagagaattttagaatagactatttctaaaaactctaaattgttag 48945124  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 27071092 - 27071017
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  27071092 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27071017  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 27151178 - 27151103
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  27151178 atgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27151103  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 27024618 - 27024668
Alignment:
Q  28 aggagagaattttggaataggctatttctaaaaactctaaattgttagtat 78  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  27024618 aggagaggattttagaataggctatttctaaaaactctaaattgttagtat 27024668  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 4943249 - 4943172
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| |||||||| |||||||| || | |||| | |||||||||||||| |||||||||||||||||||| ||||||    
T  4943249 atgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagattt 4943172  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 9768676 - 9768753
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    ||||| |||||||| |||||||| || | |||| |||||  ||||||||| |||||||||||||||||||| ||||||    
T  9768676 atgaggtggacatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagattt 9768753  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 6243528 - 6243588
Alignment:
Q  24 ttagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    |||||||| || | |||| |||||||||||||||| |||||||||||||||||||| ||||    
T  6243528 ttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 6243588  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 7509524 - 7509449
Alignment:
Q  9 atgagatggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagat 84  Q
    ||||| |||||||| ||| |||| || | |||| |||||| ||||||||| |||||||||||||||||||| ||||    
T  7509524 atgaggtggacatccttaaaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 7509449  T

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Target: scaffold0088 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 10712 - 10641
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  10712 tggacatctttaaaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagattt 10641  T

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Target: scaffold0088; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 1356 - 1414
Alignment:
Q  17 gacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttag 75  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||| ||| |||||||||    
T  1356 gacatctttagaggagaggattttagaataggctatttctaaaaagtcttaattgttag 1414  T

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Target: scaffold0088; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 8746 - 8804
Alignment:
Q  17 gacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttag 75  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||| ||| |||||||||    
T  8746 gacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 8804  T

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Target: scaffold0088; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 25241 - 25299
Alignment:
Q  17 gacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttag 75  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||| ||| |||||||||    
T  25241 gacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 25299  T

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Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 198991 - 199062
Alignment:
Q  15 tggacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttagtatagagattt 86  Q
    |||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  198991 tggacatctttagaggagaggatttttaaataggctatttctaaaaactctaaattgttagtataaagattt 199062  T

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Target: scaffold1289 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 313 - 255
Alignment:
Q  17 gacatcattagaggagagaattttggaataggctatttctaaaaactctaaattgttag 75  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||| ||| |||||||||    
T  313 gacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 255  T

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