View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_28 (Length: 433)
Name: NF6876A_low_28
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 6 - 427
Target Start/End: Original strand, 2905996 - 2906417
Alignment:
| Q |
6 |
acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905996 |
acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct |
2906095 |
T |
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| Q |
106 |
agactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906096 |
agactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg |
2906195 |
T |
|
| Q |
206 |
ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttg |
305 |
Q |
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| T |
2906196 |
ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgccaccaacaggggaatgagaaggggattttg |
2906295 |
T |
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| Q |
306 |
taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcaccaaa |
405 |
Q |
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| T |
2906296 |
taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaa |
2906395 |
T |
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| Q |
406 |
ttgaacattaataggtctaatg |
427 |
Q |
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| T |
2906396 |
ttgaacattaataggtctaatg |
2906417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 427
Target Start/End: Original strand, 2853968 - 2854389
Alignment:
| Q |
6 |
acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct |
105 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853968 |
acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct |
2854067 |
T |
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| Q |
106 |
agactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854068 |
agactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg |
2854167 |
T |
|
| Q |
206 |
ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttg |
305 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
2854168 |
ctgccgccaccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccaccaccaacaggggaatgagaaggggattttg |
2854267 |
T |
|
| Q |
306 |
taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcaccaaa |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2854268 |
taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaa |
2854367 |
T |
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| Q |
406 |
ttgaacattaataggtctaatg |
427 |
Q |
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|||||||||||||||||||||| |
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| T |
2854368 |
ttgaacattaataggtctaatg |
2854389 |
T |
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