View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_289 (Length: 243)
Name: NF6876A_low_289
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_289 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 23427919 - 23428126
Alignment:
| Q |
15 |
acatcagatagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttac |
114 |
Q |
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| T |
23427919 |
acatcagatagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttac |
23428018 |
T |
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| Q |
115 |
ttctgacatgcaacacttggtttttagttaaatctatagcatattgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaac |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23428019 |
ttctgacatgcaacacttggtttttagctaaatctatagcatattgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaac |
23428118 |
T |
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| Q |
215 |
acataatc |
222 |
Q |
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|||||||| |
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| T |
23428119 |
acataatc |
23428126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 17507306 - 17507492
Alignment:
| Q |
23 |
tagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgaca |
122 |
Q |
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|||||||||||| || | ||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||| |||||| |||||||| ||||| || |
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| T |
17507306 |
tagttgttcctctattgaacaatgtatgaccttaaacatttctttgttcacttgttctctaataaagtgaaattttgccttaatgtgtttgcttctttca |
17507405 |
T |
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| Q |
123 |
tg-caacacttggtttttagttaaatctatagcata-ttgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttc |
207 |
Q |
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| T |
17507406 |
tgaaaacacttgattctttgctaaatctatagcaaatttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttc |
17507492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 1834028 - 1833936
Alignment:
| Q |
39 |
ggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacact |
131 |
Q |
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||||||||| |||| |||||| ||| | ||||| |||||||| |||||||||||| ||||||| |||||||| |||| ||||||||||| |
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| T |
1834028 |
ggacaatgtttgacattaagccttttctcgttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatgcaacact |
1833936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 6240571 - 6240370
Alignment:
| Q |
23 |
tagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgaca |
122 |
Q |
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| T |
6240571 |
tagttgtccctcagtttgacaatgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttcca |
6240472 |
T |
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| Q |
123 |
tgcaacacttggtttttagttaaatctatagc--atattgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaacacataa |
220 |
Q |
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|| | || | | || |||| ||||||||| || || || ||||||| ||| || ||| || ||||||| ||||||||||||| |||| | ||| ||||| |
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| T |
6240471 |
tgaagcattagattcttagctaaatctatggcagatttttttatcaatgagaaatgcaataggcttgcatacttctatcttcatttctttcaacccataa |
6240372 |
T |
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| Q |
221 |
tc |
222 |
Q |
| |
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|| |
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| T |
6240371 |
tc |
6240370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 6211619 - 6211435
Alignment:
| Q |
39 |
ggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacacttggtttt |
138 |
Q |
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||||| ||||||| ||||||||||| || |||||||||||||||| | ||||||||| || ||| |||||||| ||||| |||| | || | | || | |
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| T |
6211619 |
ggacagtgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttccatgaagcattagattct |
6211520 |
T |
|
| Q |
139 |
tagttaaatctat--agcatattgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaacacataatc |
222 |
Q |
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||| ||||||||| || || || ||||||| ||| || ||| || ||||||||||||||||||||| |||| | ||| ||||||| |
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| T |
6211519 |
tagctaaatctatgcag-atttttttatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccataatc |
6211435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 16943892 - 16943954
Alignment:
| Q |
69 |
ttcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacact |
131 |
Q |
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| T |
16943892 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacact |
16943954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 17014557 - 17014619
Alignment:
| Q |
69 |
ttcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacact |
131 |
Q |
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||||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||||||||| |
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| T |
17014557 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacact |
17014619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 15489883 - 15489951
Alignment:
| Q |
84 |
ataaagtgaaatattgcctctatgtgtttacttctgacatgcaacacttggtttttagttaaatctata |
152 |
Q |
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|||||||||||||||| ||| |||||||| ||||| ||||||||||| || |||| |||||||||| |
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| T |
15489883 |
ataaagtgaaatattgtctcaatgtgtttgcttcttccatgcaacactgaattcttagctaaatctata |
15489951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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