View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_291 (Length: 243)
Name: NF6876A_low_291
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_291 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 10290336 - 10290210
Alignment:
| Q |
10 |
gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgctt |
109 |
Q |
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| T |
10290336 |
gacatcaaaatgctccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgctt |
10290237 |
T |
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| Q |
110 |
ctgcataagaattcgttcatatttatt |
136 |
Q |
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| T |
10290236 |
ctgcataagaattcgttcatatttatt |
10290210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 10290155 - 10290055
Alignment:
| Q |
143 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
242 |
Q |
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| T |
10290155 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
10290056 |
T |
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| Q |
243 |
a |
243 |
Q |
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| T |
10290055 |
a |
10290055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 10298736 - 10298669
Alignment:
| Q |
10 |
gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
77 |
Q |
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| T |
10298736 |
gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
10298669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 9747055 - 9747171
Alignment:
| Q |
20 |
tggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataaga |
119 |
Q |
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| T |
9747055 |
tggtccaacagtccttgtgaacgacggtggtgagagacatgtaagttcatcatactccctccattactcattccttttcaaccctcatttctgcagaaga |
9747154 |
T |
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| Q |
120 |
attcgttcatatttatt |
136 |
Q |
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| T |
9747155 |
attcgttcatacttatt |
9747171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 9747370 - 9747455
Alignment:
| Q |
155 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaacta |
243 |
Q |
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| T |
9747370 |
ctgttgcccatgacgacctttatatttcattcagag---ttgtataaaaaatcatttgattttctgctatatgctctttaggagaacta |
9747455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
| Q |
78 |
ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
136 |
Q |
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| T |
10298525 |
ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt |
10298467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 10298270 - 10298176
Alignment:
| Q |
146 |
tatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaacta |
243 |
Q |
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| T |
10298270 |
tatttttacctgttgactatgatgacctttttatttcgaacaaa---gttgtataaaaaatcatttgattttctgctatatgctcttttggagaacta |
10298176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 37743885 - 37743972
Alignment:
| Q |
155 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaacta |
243 |
Q |
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| T |
37743885 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaacta |
37743972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 34694519 - 34694432
Alignment:
| Q |
155 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaacta |
243 |
Q |
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| T |
34694519 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaacta |
34694432 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 34716931 - 34716844
Alignment:
| Q |
155 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaacta |
243 |
Q |
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| T |
34716931 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaacta |
34716844 |
T |
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