View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_292 (Length: 243)
Name: NF6876A_low_292
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_292 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 28518944 - 28519038
Alignment:
| Q |
149 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaata |
243 |
Q |
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| T |
28518944 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaata |
28519038 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 28518816 - 28518866
Alignment:
| Q |
19 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
69 |
Q |
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| T |
28518816 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
28518866 |
T |
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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 12728953 - 12728877
Alignment:
| Q |
161 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaag |
237 |
Q |
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| T |
12728953 |
tgaagccaaagagtccatagtatacagctacacaaagagctttaatgcatttgctgctaaactatccgaggatgaag |
12728877 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 34291144 - 34291220
Alignment:
| Q |
161 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaag |
237 |
Q |
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| T |
34291144 |
tgaagccaaagaatccatagtatacagctacacaaagagctttaatgcatttgctgctaaactgtctgaggatgaag |
34291220 |
T |
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