View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_293 (Length: 243)
Name: NF6876A_low_293
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_293 |
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| [»] scaffold0041 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 87814 - 87591
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagataagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
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| T |
87814 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
87715 |
T |
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| Q |
120 |
ttgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcataggaacaagcctgagtattgca |
219 |
Q |
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| T |
87714 |
ttgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgca |
87615 |
T |
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| Q |
220 |
tagacttcatccgtctcatgatta |
243 |
Q |
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|| |||||||| |||||||||||| |
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| T |
87614 |
tacacttcatcggtctcatgatta |
87591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 95830 - 95607
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagataagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
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||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95830 |
aatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
95731 |
T |
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| Q |
120 |
ttgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcataggaacaagcctgagtattgca |
219 |
Q |
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| T |
95730 |
ttgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgca |
95631 |
T |
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| Q |
220 |
tagacttcatccgtctcatgatta |
243 |
Q |
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| T |
95630 |
tacacttcatcggtctcatgatta |
95607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 40878469 - 40878692
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagataagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878469 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
40878568 |
T |
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| Q |
120 |
ttgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcataggaacaagcctgagtattgca |
219 |
Q |
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| T |
40878569 |
ttgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgca |
40878668 |
T |
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| Q |
220 |
tagacttcatccgtctcatgatta |
243 |
Q |
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| T |
40878669 |
tacacttcatcggtctcatgatta |
40878692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 40870452 - 40870675
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagataagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
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||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870452 |
aatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
40870551 |
T |
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| Q |
120 |
ttgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcataggaacaagcctgagtattgca |
219 |
Q |
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| T |
40870552 |
ttgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgca |
40870651 |
T |
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| Q |
220 |
tagacttcatccgtctcatgatta |
243 |
Q |
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|| |||||||| |||||||||||| |
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| T |
40870652 |
tacacttcatcggtctcatgatta |
40870675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
| Q |
31 |
cgaggaaaaagcgtttctgcacaatatctaggacaagataagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
120 |
Q |
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| T |
40352688 |
cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
| Q |
25 |
tccaaacgaggaaaaagcgtttctgcacaatatctaggacaagataagccaccaccattgtttgcatcagattgtgtcaa |
104 |
Q |
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| T |
28346823 |
tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa |
28346744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 21715686 - 21715642
Alignment:
| Q |
76 |
ccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
120 |
Q |
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| T |
21715686 |
ccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
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