View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_295 (Length: 243)
Name: NF6876A_low_295
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_295 |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 24546007 - 24546215
Alignment:
| Q |
15 |
tataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatctgagtctactctaaattgaagcaaacac |
114 |
Q |
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| T |
24546007 |
tataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatttgagtctactctaaattgaagcaaacac |
24546106 |
T |
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| Q |
115 |
tatggaattaccggtccaaataaaagaagcattcatgggtttgtagaaagaacgaaaacagaagcaattatggccatgccatttatatcataataaagag |
214 |
Q |
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| T |
24546107 |
tatggaattaccagtccaaa-aaaagaagcattcatgggtttgtagaaagaacgaaaaaagaagcaatgatggccatgtcatttatatcataatagagag |
24546205 |
T |
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| Q |
215 |
cttaattttg |
224 |
Q |
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|||||||||| |
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| T |
24546206 |
cttaattttg |
24546215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 855 - 722
Alignment:
| Q |
17 |
taattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatctgagtctactctaaattgaagcaaacacta |
116 |
Q |
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||||||||| ||||||| ||||||| || || || | |||||||||||||||||||||||| | ||| |||||||| |||||||||||||||| |
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| T |
855 |
taattgaagcataaaacctataagagact-ttaagtccaatcttaaagatgaagtcaatcttact-aatttgagtcta-----aattgaagcaaacactt |
763 |
T |
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| Q |
117 |
tggaattaccg-gtccaaataaaagaagcattcatgggttt |
156 |
Q |
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| T |
762 |
tggaatgaccaagtccaaataaaagaagcattcatgggttt |
722 |
T |
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