View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_3 (Length: 608)
Name: NF6876A_low_3
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 13 - 608
Target Start/End: Complemental strand, 3094365 - 3093770
Alignment:
| Q |
13 |
tggacatcagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgtt |
112 |
Q |
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| T |
3094365 |
tggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgtt |
3094266 |
T |
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| Q |
113 |
ccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaa |
212 |
Q |
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| T |
3094265 |
ccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaa |
3094166 |
T |
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| Q |
213 |
tggagaaaatgcctttgaatctattattttctcaatggtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttacc |
312 |
Q |
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| T |
3094165 |
tggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttacc |
3094066 |
T |
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| Q |
313 |
aaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttctt |
412 |
Q |
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| T |
3094065 |
aaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttctt |
3093966 |
T |
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| Q |
413 |
ggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatat |
512 |
Q |
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| T |
3093965 |
ggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatat |
3093866 |
T |
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| Q |
513 |
ttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatgttgacaatctga |
608 |
Q |
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| T |
3093865 |
ttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatgttgacaatctga |
3093770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 24 - 533
Target Start/End: Complemental strand, 3085508 - 3084999
Alignment:
| Q |
24 |
aaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacatt |
123 |
Q |
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| T |
3085508 |
aaccttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacatt |
3085409 |
T |
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| Q |
124 |
gaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatg |
223 |
Q |
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| T |
3085408 |
gaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaag |
3085309 |
T |
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| Q |
224 |
cctttgaatctattattttctcaatggtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctc |
323 |
Q |
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| T |
3085308 |
catttgaatctattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatc |
3085209 |
T |
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| Q |
324 |
atttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctc |
423 |
Q |
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| T |
3085208 |
atttggatcagtgtttcggagctccaaatgacctgttgaaattggacctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctt |
3085109 |
T |
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| Q |
424 |
tccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaa |
523 |
Q |
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| T |
3085108 |
tctatcctccctattgcttttgctatggcttgtagaatcatttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagtaaa |
3085009 |
T |
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| Q |
524 |
ttaaaaataa |
533 |
Q |
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| T |
3085008 |
ttaaaaataa |
3084999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
64 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
113 |
Q |
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| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
42 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
86 |
Q |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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