View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_305 (Length: 241)
Name: NF6876A_low_305
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_305 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 7212983 - 7213204
Alignment:
| Q |
13 |
tcatggtaacaatattttcaagaacacccttgtcatttctcattttctttctgtagattattgttttttgttcttgagcaccaacgacaaggaagttaag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7212983 |
tcatggtaacaatattttcaagaacacccttgtcatttctcatcttctttttgtagattattgttttttgttcttgagcaccaacgacaaggaagttaag |
7213082 |
T |
|
| Q |
113 |
gtgatgaagaatgctatagaaaactatgaagcggcatttggcaaaacaattaagttccaataatcataannnnnnnnaacagaaaaatgttagacagaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
7213083 |
gtgatgaagaatgctatagaaaactatgaagcggcatttggcaaaacaattaagttccaataatcataattttttttgacggaaaaatgttagacagaca |
7213182 |
T |
|
| Q |
213 |
gagattttgctaatattcttcg |
234 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
7213183 |
aagattttgctaatactcttcg |
7213204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University