View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_31 (Length: 432)
Name: NF6876A_low_31
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_31 |
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| [»] chr2 (4 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 125 - 432
Target Start/End: Original strand, 14953395 - 14953702
Alignment:
| Q |
125 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14953395 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt |
14953494 |
T |
|
| Q |
225 |
ctcattcttctccgatcagcttagatctgaccacctccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcgcca |
324 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14953495 |
ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcactg |
14953594 |
T |
|
| Q |
325 |
actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaactccaaccacttctactgtcaccac |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
14953595 |
actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac |
14953694 |
T |
|
| Q |
425 |
caaagtca |
432 |
Q |
| |
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|||||||| |
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| T |
14953695 |
caaagtca |
14953702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 14953277 - 14953353
Alignment:
| Q |
10 |
acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttc |
86 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14953277 |
acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttc |
14953353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 40833336 - 40833270
Alignment:
| Q |
9 |
gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatac |
76 |
Q |
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||||||||| |||||| |||||| |||||||||| | |||| ||||||| |||||||||||||||||| |
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| T |
40833336 |
gacatcaaattacaaa-acaaatttgacaccaaatattgttgaccgtatgtttatacggtatttatac |
40833270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 14002287 - 14002214
Alignment:
| Q |
9 |
gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagt |
82 |
Q |
| |
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|||||||||||||||| |||||| |||| |||||| |||| | ||||||||||||||||| ||||| |||| |
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| T |
14002287 |
gacatcaaaatacaaatacaaattagacatcaaacaaagttcgcaatatatttatacggtattgatacaccagt |
14002214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 125 - 432
Target Start/End: Complemental strand, 4561725 - 4561418
Alignment:
| Q |
125 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt |
224 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4561725 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt |
4561626 |
T |
|
| Q |
225 |
ctcattcttctccgatcagcttagatctgaccacctccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcgcca |
324 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || |
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| T |
4561625 |
ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccacttctgcaaacgacctgcaactctcagattcagatcaccg |
4561526 |
T |
|
| Q |
325 |
actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaactccaaccacttctactgtcaccac |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
4561525 |
actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac |
4561426 |
T |
|
| Q |
425 |
caaagtca |
432 |
Q |
| |
|
|||||||| |
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|
| T |
4561425 |
caaagtca |
4561418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 4561848 - 4561772
Alignment:
| Q |
10 |
acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttc |
86 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4561848 |
acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttc |
4561772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 1101801 - 1101734
Alignment:
| Q |
9 |
gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttataca |
77 |
Q |
| |
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|||| |||||||||||||||||| |||| || |||||||||| |||||| |||||| |||||| |||| |
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| T |
1101801 |
gacaccaaaatacaaacacaaattagacatcatacactgttcatcgtata-ttatacagtatttgtaca |
1101734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 125 - 432
Target Start/End: Original strand, 5370525 - 5370832
Alignment:
| Q |
125 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5370525 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt |
5370624 |
T |
|
| Q |
225 |
ctcattcttctccgatcagcttagatctgaccacctccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcgcca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | |
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| T |
5370625 |
ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttcctcttctgcaaacgacctgcaactctcagattctgatcactg |
5370724 |
T |
|
| Q |
325 |
actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaactccaaccacttctactgtcaccac |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
5370725 |
actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac |
5370824 |
T |
|
| Q |
425 |
caaagtca |
432 |
Q |
| |
|
|||||||| |
|
|
| T |
5370825 |
caaagtca |
5370832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 5370406 - 5370482
Alignment:
| Q |
10 |
acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttc |
86 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5370406 |
acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatatatcagtgttc |
5370482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 46697262 - 46697191
Alignment:
| Q |
9 |
gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatca |
80 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46697262 |
gacatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatca |
46697191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 46697047 - 46697010
Alignment:
| Q |
230 |
tcttctccgatcagcttagatctgaccacctccaacaa |
267 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
46697047 |
tcttctccgatcagctcagatctgaccaccaccaacaa |
46697010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 23885849 - 23885914
Alignment:
| Q |
9 |
gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttat |
74 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| || |||||||||||| |||||||| |
|
|
| T |
23885849 |
gacatcaaaatacaaacacaaattagacatcaaacactgtttacagtatatttatacagtatttat |
23885914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 56398536 - 56398469
Alignment:
| Q |
9 |
gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttataca |
77 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||| |||||| |||| |
|
|
| T |
56398536 |
gacatcaaaatacaaacacaaattagacatcaaacactgttcatcgtata-ttatacagtatttgtaca |
56398469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 6284577 - 6284650
Alignment:
| Q |
9 |
gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagt |
82 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| | |||| |||| ||||||||||||| ||| |||||| |
|
|
| T |
6284577 |
gacatcaaaatacaaacacaaattagacatcaaacattattcatagtatctttatacggtattcatatatcagt |
6284650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 37606069 - 37606037
Alignment:
| Q |
17 |
aatacaaacacaaatatgacaccaaacactgtt |
49 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
37606069 |
aatacaaacacaaatatgacaccatacactgtt |
37606037 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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