View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_314 (Length: 238)
Name: NF6876A_low_314
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_314 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 31564401 - 31564605
Alignment:
| Q |
22 |
ggcattacttcttcagacaaaggctcgagtaatggtttcaatttcatcttatttgct----gtttctattctaatttttctacatctaatagaagtaaat |
117 |
Q |
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| T |
31564401 |
ggcattacttcttcagacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaat |
31564500 |
T |
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| Q |
118 |
atgttagacagatttgaatttatacatgtatttcaatttttac------atgtaaaagagaaaaaatgaattatacttccattttgcccatcttctcata |
211 |
Q |
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| T |
31564501 |
atgttagacagatttgaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcata |
31564600 |
T |
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| Q |
212 |
ttgtt |
216 |
Q |
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||||| |
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| T |
31564601 |
ttgtt |
31564605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
| Q |
32 |
cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca |
127 |
Q |
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| T |
33416536 |
cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca |
33416437 |
T |
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| Q |
128 |
gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt |
196 |
Q |
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| T |
33416436 |
gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt |
33416366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
| Q |
41 |
aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat |
136 |
Q |
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||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||| |
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| T |
30653203 |
aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac |
30653301 |
T |
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| Q |
137 |
ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt |
195 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30653302 |
ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt |
30653360 |
T |
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