View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_315 (Length: 238)
Name: NF6876A_low_315
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_315 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 32928733 - 32928851
Alignment:
| Q |
106 |
atacaatctaactattaatctacttatttgcttttaaaataaaggttaaatgtttgtttaaatccttataaaataaaattatcaacatttgtgttatgaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32928733 |
atacaatctaactattaatctacttatttgcttttaaaataaaggttaaatgtttgtttaaatcctt-----ataaaattatcaacatttgtgttatgaa |
32928827 |
T |
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| Q |
206 |
tatatgtatttgtggatgtccatc |
229 |
Q |
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||||||||| ||||||||||||| |
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| T |
32928828 |
tatatgtatcagtggatgtccatc |
32928851 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 32928629 - 32928700
Alignment:
| Q |
11 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32928629 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
32928700 |
T |
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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 53247438 - 53247509
Alignment:
| Q |
11 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
82 |
Q |
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| T |
53247438 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
53247509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 489487 - 489416
Alignment:
| Q |
11 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
82 |
Q |
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| T |
489487 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
489416 |
T |
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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 41612827 - 41612899
Alignment:
| Q |
11 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcgt |
83 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41612827 |
ccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcgt |
41612899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 46750933 - 46751004
Alignment:
| Q |
11 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
82 |
Q |
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| T |
46750933 |
ccgcataatgcagtagattagtgtgtttgactttggatcaaaaggtcgtgggtttgactcccactgtggtcg |
46751004 |
T |
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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 40448478 - 40448549
Alignment:
| Q |
11 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
82 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40448478 |
ccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcg |
40448549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 1483125 - 1483054
Alignment:
| Q |
11 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
82 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
1483125 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactaccattgtggtcg |
1483054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3222590 - 3222661
Alignment:
| Q |
11 |
ccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
82 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3222590 |
ccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcg |
3222661 |
T |
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