View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_318 (Length: 237)
Name: NF6876A_low_318
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_318 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 46238694 - 46238461
Alignment:
| Q |
1 |
acaacttccttaacgttttcctcctatgcctcgataacagtaccacaacaagaataaacaaagaaatagcatgcatattcataggagtaaagggaggaaa |
100 |
Q |
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||||| || |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46238694 |
acaacatctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaaatagcatgcatattcataggagtaaacagaggaaa |
46238595 |
T |
|
| Q |
101 |
gtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccgtcgattgtccttcgatcgtttcatgcatcttcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238594 |
gtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccgtcgattgtccttcgatcgtttcatgcatcttcttc |
46238495 |
T |
|
| Q |
201 |
gcaacttcgttcgtcttctctccttctttccgcg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
46238494 |
gcaacttcgttcgtcttctctccttctttccgcg |
46238461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3455964 - 3456193
Alignment:
| Q |
1 |
acaacttccttaacgttttcctcctatgcctcgataacagtaccacaacaagaataaacaaagaaatagcatgcatattcataggagtaaagggaggaaa |
100 |
Q |
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|
|||||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| |
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| T |
3455964 |
acaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaaatagcatgcatattcttaggagtaaacagaagaaa |
3456063 |
T |
|
| Q |
101 |
gtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccgtcgattgtccttcgatcgtttcatgcatcttcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
3456064 |
gtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccgtcgattgcccttcgattgtttcctgcatcttcttc |
3456163 |
T |
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| Q |
201 |
gcaacttcgttcgtcttctctccttctttc |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
3456164 |
gcaacttcgttcgtcttctctccttctttc |
3456193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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