View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_320 (Length: 237)

Name: NF6876A_low_320
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_320
NF6876A_low_320
[»] chr3 (8 HSPs)
chr3 (11-221)||(35695072-35695288)
chr3 (46-129)||(557578-557662)
chr3 (42-113)||(47720898-47720969)
chr3 (39-92)||(26373382-26373435)
chr3 (40-106)||(30499005-30499071)
chr3 (44-127)||(42433421-42433504)
chr3 (20-91)||(26482523-26482594)
chr3 (45-129)||(28541480-28541564)
[»] chr6 (2 HSPs)
chr6 (40-221)||(1717609-1717790)
chr6 (40-130)||(31750232-31750323)
[»] chr2 (7 HSPs)
chr2 (14-221)||(25221649-25221857)
chr2 (15-221)||(31055450-31055656)
chr2 (40-129)||(17303530-17303620)
chr2 (40-116)||(33050827-33050903)
chr2 (40-92)||(35658276-35658328)
chr2 (41-102)||(18481911-18481971)
chr2 (43-131)||(39711495-39711583)
[»] chr4 (8 HSPs)
chr4 (18-221)||(51267378-51267578)
chr4 (42-116)||(22065807-22065881)
chr4 (40-221)||(7784684-7784865)
chr4 (64-180)||(41322015-41322132)
chr4 (40-129)||(20626618-20626707)
chr4 (42-130)||(38011455-38011544)
chr4 (40-131)||(12328414-12328506)
chr4 (47-107)||(41421371-41421431)
[»] chr5 (6 HSPs)
chr5 (17-124)||(18012869-18012976)
chr5 (40-131)||(3925536-3925630)
chr5 (46-106)||(5215129-5215189)
chr5 (39-131)||(4157577-4157670)
chr5 (41-107)||(35078046-35078112)
chr5 (72-131)||(35193242-35193302)
[»] scaffold0042 (1 HSPs)
scaffold0042 (39-131)||(31132-31225)
[»] chr1 (6 HSPs)
chr1 (24-130)||(14635725-14635830)
chr1 (41-102)||(11871507-11871568)
chr1 (41-102)||(18628874-18628935)
chr1 (75-131)||(32365995-32366052)
chr1 (40-93)||(43031353-43031406)
chr1 (44-96)||(23043549-23043601)
[»] scaffold0445 (1 HSPs)
scaffold0445 (43-131)||(10393-10482)
[»] chr7 (2 HSPs)
chr7 (26-96)||(43574000-43574070)
chr7 (40-129)||(22575185-22575279)
[»] scaffold0174 (1 HSPs)
scaffold0174 (43-130)||(30744-30829)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 35695288 - 35695072
Alignment:
Q  11 acatcagtaggataaaaaaggggtttaggttggcgaatggatcgaccgtcatcacggtaac-aagatccacgtaccaacaaccccctaaacaaagcagta 109  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||| |    
T  35695288 acatcagtaggataaaaaggggttttaggttggcgaatggatcgaccgtcatcacggcaactaagatccacgtaccagcaatcccctaaacaaagcagca 35695189  T
Q  110 ggtataaagctctttcgagcatcactccgaaaacaatcacacgcactgcaacggataaaaggacg-----gtaccggtgtggaggcggacctaaagcatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||     |||||||||||||||||||||| |||||||    
T  35695188 ggtataaagctctttcgagcatcactccgaaaacaatcacacggactacgacggataaaaggacggtacggtaccggtgtggaggcggacctgaagcatc 35695089  T
Q  205 aagacctgcagatctca 221  Q
    |||| ||||||||||||    
T  35695088 aagatctgcagatctca 35695072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 557662 - 557578
Alignment:
Q  46 aatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa-agctctttcgagc 129  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||| ||  |||||||| |||||||||||||    
T  557662 aatggatcgaccgccaacacggtatcaagatccacgtaccaacaaccccctgaacaaaacatcaggtataatagctctttcgagc 557578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 47720969 - 47720898
Alignment:
Q  42 ggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggta 113  Q
    ||||||||||||||||| || || |||| |||||||||||||||||||||||||| |||||| ||| |||||    
T  47720969 ggcgaatggatcgaccgccaacaaggtatcaagatccacgtaccaacaaccccctgaacaaaacagcaggta 47720898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 26373382 - 26373435
Alignment:
Q  39 gttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaacc 92  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  26373382 gttggcgaatggatcgaccgtcaacacggtatcaagatccacgtaccagcaacc 26373435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 30499005 - 30499071
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagca 106  Q
    ||||||||||||||||||| || ||||||  ||||||||| |||||| ||||||||| |||||||||    
T  30499005 ttggcgaatggatcgaccgccaacacggtttcaagatccaagtaccagcaaccccctcaacaaagca 30499071  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 42433421 - 42433504
Alignment:
Q  44 cgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa-agctctttcga 127  Q
    |||||||||| |||| || ||||||| | |||||||||||||| ||| ||||| |||||||||| |||||||| |||||||||||    
T  42433421 cgaatggatccaccgccaacacggtatcgagatccacgtaccagcaa-cccctgaacaaagcagcaggtataatagctctttcga 42433504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 26482594 - 26482523
Alignment:
Q  20 ggataaaaaaggggtttaggttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaac 91  Q
    ||||||||||||||| || |||| ||| ||||||||||| || || || | |||||||||||||||||||||    
T  26482594 ggataaaaaaggggtataagttgacgagtggatcgaccgccaacatggcatcaagatccacgtaccaacaac 26482523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 28541480 - 28541564
Alignment:
Q  45 gaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtata-aagctctttcgagc 129  Q
    |||||||||||||| || ||||||| ||| ||||| |||||| ||||||||| ||||||| || ||| |||  |||||||||||||    
T  28541480 gaatggatcgaccgccaacacggtatcaa-atccatgtaccatcaaccccctgaacaaagtagcaggcataggagctctttcgagc 28541564  T

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Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 1717609 - 1717790
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataaagctctttcgagcatcactccga 139  Q
    |||||| |||||||||||| || ||||||||||| |||||||  ||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  1717609 ttggcgtatggatcgaccgccagcacggtaacaaaatccacgatccagcaaccccctgaacaaagcagcaggtataaagctctttcgagcaacactccga 1717708  T
Q  140 aaacaatcacacgcactgcaacggataaaaggacggtaccggtgtggaggcggacctaaagcatcaagacctgcagatctca 221  Q
    ||||||||||| | |||||||| || || ||||| ||||||| ||| || ||| ||| | ||||| ||||||||||||||||    
T  1717709 aaacaatcacaaggactgcaacagacaagaggactgtaccggagtgaagtcggccctgatgcatcgagacctgcagatctca 1717790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 31750323 - 31750232
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaa-ccccctaaacaaagcagtaggtataa-agctctttcgagca 130  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||| ||| |||||| || ||||||| |||||||| ||||||||||||||    
T  31750323 ttggcgaatggatcgaccgccaacacggtaacaa-atccacgtaccagcaacccccctgaataaagcagcaggtataatagctctttcgagca 31750232  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 25221857 - 25221649
Alignment:
Q  14 tcagtaggataaaaaaggggttt-aggttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggt 112  Q
    ||||||||||| |||| || ||| || ||| || |||||||||||| || || |||| |||||||||||| ||| ||||||||| |||||| ||| ||||    
T  25221857 tcagtaggatacaaaatggtttttagattgacgtatggatcgaccgccagcatggtaccaagatccacgttccagcaaccccctgaacaaatcagcaggt 25221758  T
Q  113 ataaagctctttcgagcatcactccgaaaacaatcacacgcactgcaacggataaaaggacggtaccggtgtggaggcggacctaaagcatcaagacctg 212  Q
    |||||||||||||||||| || ||||| |||||||||| | ||||||||||| || | |||||||||   ||| |||||||||| | |||||||||||||    
T  25221757 ataaagctctttcgagcaacaatccgagaacaatcacaaggactgcaacggacaagaagacggtaccatagtgaaggcggacctgatgcatcaagacctg 25221658  T
Q  213 cagatctca 221  Q
    || ||||||    
T  25221657 caaatctca 25221649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 31055656 - 31055450
Alignment:
Q  15 cagtaggataaaaaaggggtttagg-ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggta 113  Q
    |||||| |||||| |||| |||| | |||||| |||||||||||| || ||||||||||| |||||||  ||| ||||||||| || ||||||| |||||    
T  31055656 cagtagaataaaagagggttttaagattggcgtatggatcgaccgccaacacggtaacaa-atccacggtccagcaaccccctgaaaaaagcagaaggta 31055558  T
Q  114 taaagctctttcgagcatcactccgaaaacaatcacacgcactgcaacggataaaaggacggtaccggtgtggaggcggacctaaagcatcaagacctgc 213  Q
    ||||||||||||||||| |||||||| |||| ||||| | ||||||| ||| || | ||||||||||| ||| ||| |||||| | ||||  ||||||||    
T  31055557 taaagctctttcgagcaacactccgagaacactcacaaggactgcaagggacaagatgacggtaccggagtgaaggaggacctgatgcattgagacctgc 31055458  T
Q  214 agatctca 221  Q
    | ||||||    
T  31055457 atatctca 31055450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 17303620 - 17303530
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa-agctctttcgagc 129  Q
    ||||||||| |||| |||| || |||| || | |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  17303620 ttggcgaatagatccaccgccaacacgatatcgagatccacgtaccaacaaccccctgaacaaagcagcaggtataatagctctttcgagc 17303530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 33050827 - 33050903
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa 116  Q
    ||||||||||||||||||| || ||||||| | | ||||||||||||   | ||||| |||||||||| ||||||||    
T  33050827 ttggcgaatggatcgaccgccaacacggtatccaaatccacgtaccagtgatcccctgaacaaagcagcaggtataa 33050903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 35658328 - 35658276
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaacc 92  Q
    ||||||||||||||||||| || |||||||| | ||||||||||||| |||||    
T  35658328 ttggcgaatggatcgaccgccaacacggtaaaacgatccacgtaccagcaacc 35658276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 18481911 - 18481971
Alignment:
Q  41 tggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaa 102  Q
    |||||||||||||||||| || ||||||||| | ||||| || |||||||| ||||||||||    
T  18481911 tggcgaatggatcgaccgccaacacggtaacga-atccaagtgccaacaactccctaaacaa 18481971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 39711495 - 39711583
Alignment:
Q  43 gcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataaagctctttcgagcat 131  Q
    |||||||||| ||||| || ||||||||||| ||||| || |||||| | | || |||||||||| | | ||||| ||||||| |||||    
T  39711495 gcgaatggatagaccgccaacacggtaacaaaatccaagtgccaacagctctctgaacaaagcagcaagcataaaactctttcaagcat 39711583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 51267578 - 51267378
Alignment:
Q  18 taggataaaaaaggggttt-aggttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa 116  Q
    ||||||||||||||| ||| || |||| | |||||||||| | || ||| ||||||| |||||||| ||| ||||||||| |||||||||| ||||||||    
T  51267578 taggataaaaaagggtttttagattggtgtatggatcgactgccaacacagtaacaa-atccacgttccagcaaccccctgaacaaagcagcaggtataa 51267480  T
Q  117 agctctttcgagcatcactccgaaaacaatcacacgcactgcaacggataaaaggacggtaccggtgtggaggcggacctaaagcatcaagacctgcaga 216  Q
    |||| ||||||||| ||||| || |||| ||||| | |||||||| || ||   ||||  ||||| ||  ||| |||||||| ||||| |||||||||||    
T  51267479 agctttttcgagcaacactctgagaacagtcacaaggactgcaacagacaa---gacgacaccggagttaaggtggacctaatgcatcgagacctgcaga 51267383  T
Q  217 tctca 221  Q
    |||||    
T  51267382 tctca 51267378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 22065881 - 22065807
Alignment:
Q  42 ggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa 116  Q
    ||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  22065881 ggcgaatggatcgaccgccaacacggtatcaagatccacgtaccaacaacccccttaacaaagcagcaggtataa 22065807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 7784865 - 7784684
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataaagctctttcgagcatcactccga 139  Q
    |||||| |||||| ||| | || ||||||||||| |||||||| ||| ||| ||||| | |||||||| |||||||| ||||||||||||| ||||| ||    
T  7784865 ttggcgtatggattgacagccagcacggtaacaaaatccacgttccagcaatcccctgagcaaagcagcaggtataacgctctttcgagcaacactctga 7784766  T
Q  140 aaacaatcacacgcactgcaacggataaaaggacggtaccggtgtggaggcggacctaaagcatcaagacctgcagatctca 221  Q
     ||||||| || | ||||||||||| ||   ||||||||  | ||| |||||| ||| | ||||| ||| ||||||||||||    
T  7784765 gaacaatcccaaggactgcaacggaaaatgagacggtactagagtgaaggcgggcctgatgcatcgagagctgcagatctca 7784684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 41322132 - 41322015
Alignment:
Q  64 acggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataaagctctttcgagcatcactccgaaaacaa-tcacacgcactgcaacg 162  Q
    |||||||||||||||||   ||| |||  |||| |||||||||| |||||||||||||| ||||||| |||  | ||||||| ||||| | |||||||||    
T  41322132 acggtaacaagatccacagtccagcaattccctgaacaaagcagcaggtataaagctctgtcgagcaacacctctaaaacaagtcacaagaactgcaacg 41322033  T
Q  163 gataaaaggacggtaccg 180  Q
    ||||| ||||| ||||||    
T  41322032 gataagaggacagtaccg 41322015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 20626618 - 20626707
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataaagctctttcgagc 129  Q
    |||||||||||||| |||| || ||||||| |||||||||||||| | ||||||||| ||| ||| || ||||| | |||||||| ||||    
T  20626618 ttggcgaatggatcaaccgccaacacggtatcaagatccacgtactagcaaccccctgaaccaagtagcaggtaaatagctcttttgagc 20626707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 38011455 - 38011544
Alignment:
Q  42 ggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtat-aaagctctttcgagca 130  Q
    |||||||||||||||||||| ||||||||||| ||||| || |||||| | |||| ||| |||||| | | || ||||||||||||||||    
T  38011455 ggcgaatggatcgaccgtcaacacggtaacaaaatccaagtgccaacagctccctgaactaagcagcaagcataaaagctctttcgagca 38011544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 12328506 - 12328414
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa-agctctttcgagcat 131  Q
    |||| |||||||||||||||||  |||||| || ||||||| ||||| ||||||||| |||||  |||  || |||| |||||||||||||||    
T  12328506 ttggtgaatggatcgaccgtcaatacggtatcacgatccacataccagcaaccccctgaacaacacagccggcataatagctctttcgagcat 12328414  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 41421371 - 41421431
Alignment:
Q  47 atggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcag 107  Q
    |||||||||||| || ||||||||||| |||||||| |||||| | |||| ||||||||||    
T  41421371 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcag 41421431  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 18012976 - 18012869
Alignment:
Q  17 gtaggataaaaaaggggtttaggttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa 116  Q
    ||||||||||| |||| |||| |||||||||| ||| ||||| ||  |||||| |||||||||||||||||||||||| | |||||||||| | | | ||    
T  18012976 gtaggataaaagagggttttaagttggcgaattgattgaccgccaatacggtatcaagatccacgtaccaacaaccccttgaacaaagcagcatgcacaa 18012877  T
Q  117 agctcttt 124  Q
    ||||||||    
T  18012876 agctcttt 18012869  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 3925630 - 3925536
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa----agctctttcgagcat 131  Q
    ||||||||||||||||||  || ||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||    |||||||||||||||    
T  3925630 ttggcgaatggatcgaccaccaacacggtaacaa-atccacgtaccagcaaccccctgaacaaagcagcaggtataataatagctctttcgagcat 3925536  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 5215189 - 5215129
Alignment:
Q  46 aatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagca 106  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||||| | |||||||||    
T  5215189 aatggatcgaccgtcaacacagtttcaagatccacgtaccaacaaccccttgaacaaagca 5215129  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 4157670 - 4157577
Alignment:
Q  39 gttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa-agctctttcgagcat 131  Q
    |||||||||||||| |||||||| ||||||| ||||||||||| |||| || || ||| ||||||  |||||| | || ||||||||| |||||    
T  4157670 gttggcgaatggattgaccgtcaacacggtatcaagatccacgcaccagcagcctcctgaacaaaatagtaggcaaaatagctctttccagcat 4157577  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 35078046 - 35078112
Alignment:
Q  41 tggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcag 107  Q
    |||||||||||||||||| || ||||||  ||||||||||||||||  |||||| | || |||||||    
T  35078046 tggcgaatggatcgaccgccaacacggtttcaagatccacgtaccagaaaccccatgaagaaagcag 35078112  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 35193302 - 35193242
Alignment:
Q  72 aagatccacgtaccaacaaccccctaaacaaagcagtaggtataa-agctctttcgagcat 131  Q
    ||||||| ||||||||||||| ||| |||||| || |||| |||| |||||||||||||||    
T  35193302 aagatccgcgtaccaacaacctcctgaacaaaccaataggcataatagctctttcgagcat 35193242  T

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Target: scaffold0042 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 31225 - 31132
Alignment:
Q  39 gttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataa-agctctttcgagcat 131  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||| |||||| ||  ||| | || |||||||||||||||    
T  31225 gttggcgaatggatcgaccgtcaacacggtatcaagatccacgtaccagcaacctcctgaacaaaacaccaggcaaaatagctctttcgagcat 31132  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 14635725 - 14635830
Alignment:
Q  24 aaaaaaggggtttaggttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtata-aagctct 122  Q
    ||||||||| || | || |||||||||||||||||||| ||||||||||| ||||||||||| | | |||||| |||||||||| ||| |||  ||||||    
T  14635725 aaaaaagggtttaaagtaggcgaatggatcgaccgtcaacacggtaacaa-atccacgtacc-agacccccctgaacaaagcagcaggcataggagctct 14635822  T
Q  123 ttcgagca 130  Q
    ||||||||    
T  14635823 ttcgagca 14635830  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 11871568 - 11871507
Alignment:
Q  41 tggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaa 102  Q
    ||||||||||||||||||  | ||||||||||| ||||| || |||||||| |||| |||||    
T  11871568 tggcgaatggatcgaccgctaacacggtaacaaaatccaagtgccaacaactccctgaacaa 11871507  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 18628874 - 18628935
Alignment:
Q  41 tggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaa 102  Q
    |||||||||||||||||| || ||||||||||| ||||| || |||||| | |||| |||||    
T  18628874 tggcgaatggatcgaccgccaacacggtaacaaaatccaagtgccaacagctccctgaacaa 18628935  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 32366052 - 32365995
Alignment:
Q  75 atccacgtaccaacaaccccctaaacaaagcagtaggtat-aaagctctttcgagcat 131  Q
    ||||||||||||||||||||  |||||| |||| ||| || |||||||||||||||||    
T  32366052 atccacgtaccaacaacccctcaaacaatgcagcaggcataaaagctctttcgagcat 32365995  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 43031353 - 43031406
Alignment:
Q  40 ttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccc 93  Q
    |||| ||||||||| |||| || ||||||||| |||||||||||||| ||||||    
T  43031353 ttggtgaatggatctaccgccaacacggtaaccagatccacgtaccagcaaccc 43031406  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 23043601 - 23043549
Alignment:
Q  44 cgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccct 96  Q
    ||||||||||||||  || ||||||| ||| |||||||||||| |||||||||    
T  23043601 cgaatggatcgaccaccaacacggtatcaatatccacgtaccagcaaccccct 23043549  T

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Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 10482 - 10393
Alignment:
Q  43 gcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtata-aagctctttcgagcat 131  Q
    ||||||||||| |||| || ||| ||  |||||||||||||||| ||||||||| |||||||||| ||| ||| ||||||||| ||||||    
T  10482 gcgaatggatccaccgccaacacagtttcaagatccacgtaccagcaaccccctgaacaaagcagcaggcatagaagctcttttgagcat 10393  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 43574000 - 43574070
Alignment:
Q  26 aaaaggggtttaggttggcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccct 96  Q
    ||||||| ||||  ||||||||||||  ||||| || ||||||| |||||||||||||||| |||||||||    
T  43574000 aaaagggttttaaattggcgaatggactgaccgccaacacggtatcaagatccacgtaccagcaaccccct 43574070  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 22575185 - 22575279
Alignment:
Q  40 ttggcgaatggatcgacc-gtcatcacggt---aacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataaa-gctctttcgagc 129  Q
    |||||||||||||||||| | || ||||||   || ||||||||||||||| ||||||||| |||||||||| |||  |||| ||||||||||||    
T  22575185 ttggcgaatggatcgaccagccaacacggtatcaagaagatccacgtaccagcaaccccctgaacaaagcagcaggcgtaaatgctctttcgagc 22575279  T

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Target: scaffold0174 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 30829 - 30744
Alignment:
Q  43 gcgaatggatcgaccgtcatcacggtaacaagatccacgtaccaacaaccccctaaacaaagcagtaggtataaagctctttcgagca 130  Q
    |||||||||| |||||||| ||||||||||| ||||| || |||||||| ||||  || |||||| | | ||||||||||||||||||    
T  30829 gcgaatggattgaccgtcaacacggtaacaa-atccaagtgccaacaactccctgcac-aagcagcaagcataaagctctttcgagca 30744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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