View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_322 (Length: 235)
Name: NF6876A_low_322
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_322 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0418 (2 HSPs) |
| |
|
| [»] scaffold0131 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 7452887 - 7452655
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7452887 |
ggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatggttctgatac |
7452788 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac |
199 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
7452787 |
gttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtctgtggcagac |
7452688 |
T |
|
| Q |
200 |
ttgttctctgttaatttggagcagcagggggtt |
232 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
7452687 |
ttgttctctgttgatttggagcagcagggggtt |
7452655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 45255520 - 45255559
Alignment:
| Q |
86 |
gatggttctgatacgttgttttggtatgataagtggttag |
125 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
45255520 |
gatggttccgatactttgttttggtatgataagtggttag |
45255559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36306319 - 36306087
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36306319 |
ggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgatac |
36306220 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac |
199 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
36306219 |
gttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcagac |
36306120 |
T |
|
| Q |
200 |
ttgttctctgttaatttggagcagcagggggtt |
232 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
36306119 |
ttgttctctgttgatttggagcagcagggggtt |
36306087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 21528632 - 21528478
Alignment:
| Q |
68 |
gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt |
167 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
21528632 |
gtggctaggagggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagt |
21528533 |
T |
|
| Q |
168 |
taacggaaaataagctcatgtctgtggcagacttgttctctgttaatttggagca |
222 |
Q |
| |
|
|||| || |||||| |||||||||| | |||||||||||||||| ||| |||||| |
|
|
| T |
21528532 |
taacagagaataagttcatgtctgttggagacttgttctctgttgattcggagca |
21528478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 47106374 - 47106413
Alignment:
| Q |
86 |
gatggttctgatacgttgttttggtatgataagtggttag |
125 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
47106374 |
gatggttccgatactttgttttggtatgataagtggttag |
47106413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 7396402 - 7396443
Alignment:
| Q |
83 |
ggagatggttctgatacgttgttttggtatgataagtggtta |
124 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
7396402 |
ggagatgggtttgatacgttgttttggtatgataaatggtta |
7396443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 15653310 - 15653544
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15653310 |
ggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggatctgatac |
15653409 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac |
199 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
15653410 |
gttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctatggcagac |
15653509 |
T |
|
| Q |
200 |
ttgttctctgttaatttggagcagcagggggtttt |
234 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
15653510 |
ttgttctctgttgatttggagcagcagggggtttt |
15653544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 46624228 - 46624000
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||||||| || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
46624228 |
ggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggttctgatac |
46624129 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac |
199 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46624128 |
gttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgtggcagac |
46624029 |
T |
|
| Q |
200 |
ttgttctctgttaatttggagcagcaggg |
228 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
46624028 |
ttgttctctgttgatttggagcagcaggg |
46624000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 12378436 - 12378546
Alignment:
| Q |
103 |
gttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttg |
202 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||| |||||| || | || ||||||||||||||||| ||| |||||| |||||||||||||| | ||| |
|
|
| T |
12378436 |
gttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttg |
12378535 |
T |
|
| Q |
203 |
ttctctgttaa |
213 |
Q |
| |
|
|||| |||||| |
|
|
| T |
12378536 |
ttctttgttaa |
12378546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 34232148 - 34232109
Alignment:
| Q |
86 |
gatggttctgatacgttgttttggtatgataagtggttag |
125 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
34232148 |
gatggttctgacactttgttttggtatgataagtggttag |
34232109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30166949 - 30167184
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
30166949 |
ggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggttctgatac |
30167048 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac |
199 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
30167049 |
gttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgtggcagac |
30167148 |
T |
|
| Q |
200 |
ttgttctctgttaatttggagcagcagggggttttt |
235 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||||| |
|
|
| T |
30167149 |
ttgttctctgttgatctggagcagcagggtgttttt |
30167184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 49731605 - 49731769
Alignment:
| Q |
68 |
gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt |
167 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49731605 |
gtggctaggagggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagt |
49731704 |
T |
|
| Q |
168 |
taacggaaaataagctcatgtctgtggcagacttgttctctgttaatttggagcagcagggggtt |
232 |
Q |
| |
|
|||| || |||||| |||||| |||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
49731705 |
taacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggtt |
49731769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 50544673 - 50544634
Alignment:
| Q |
86 |
gatggttctgatacgttgttttggtatgataagtggttag |
125 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
50544673 |
gatggttctgacaccttgttttggtatgataagtggttag |
50544634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 45422055 - 45421820
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
45422055 |
ggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggttctgatac |
45421956 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac |
199 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
45421955 |
gttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgtggcagac |
45421856 |
T |
|
| Q |
200 |
ttgttctctgttaatttggagcagcagggggttttt |
235 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||| |
|
|
| T |
45421855 |
ttgttctctgttgatctggagcagcaggggtttttt |
45421820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10486525 - 10486757
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||| || ||||| | ||||||| | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
10486525 |
ggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatggagctgatac |
10486624 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac |
199 |
Q |
| |
|
||||||||||| |||| |||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
10486625 |
gttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtctgtggcagac |
10486724 |
T |
|
| Q |
200 |
ttgttctctgttaatttggagcagcagggggtt |
232 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||| |
|
|
| T |
10486725 |
ttgttctctgttgattcggagcagcggggggtt |
10486757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 6049670 - 6049633
Alignment:
| Q |
86 |
gatggttctgatacgttgttttggtatgataagtggtt |
123 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6049670 |
gatggttctgatactttgttttggtatgataagtggtt |
6049633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 35122384 - 35122449
Alignment:
| Q |
73 |
taggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttccttt |
138 |
Q |
| |
|
||||| ||| || |||||| |||||||||||||||||| | ||| |||||| || ||||||||||| |
|
|
| T |
35122384 |
taggaaggtgggggatggtgctgatacgttgttttggtctcataggtggtttgatgatgttccttt |
35122449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3129587 - 3129811
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||| |||||| || ||| | || ||||||| | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
3129587 |
ggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatggagctgatac |
3129686 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac |
199 |
Q |
| |
|
|||||||||| || || |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
3129687 |
attgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtctgtggcagac |
3129786 |
T |
|
| Q |
200 |
ttgttctctgttaatttggagcagc |
224 |
Q |
| |
|
||||||||| || ||| |||||||| |
|
|
| T |
3129787 |
ttgttctctattgattcggagcagc |
3129811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 8654746 - 8654912
Alignment:
| Q |
68 |
gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt |
167 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
8654746 |
gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt |
8654845 |
T |
|
| Q |
168 |
taacggaaaataagctcatgtctgtggcagacttgttctctgttaatttggagcagcagggggtttt |
234 |
Q |
| |
|
|||| || |||||| | |||||||||||||||||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
8654846 |
taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggtttt |
8654912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 47541381 - 47541236
Alignment:
| Q |
79 |
ggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaat |
178 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||| ||||| |||||| ||||||||||||||||||| || ||| |
|
|
| T |
47541381 |
ggttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaat |
47541282 |
T |
|
| Q |
179 |
aagctcatgtctgtggcagacttgttctctgttaatttggagcagc |
224 |
Q |
| |
|
||| |||||||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
47541281 |
aagttcatgtctgtggcagacttgttttctgttgattcggagcagc |
47541236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 7662966 - 7663079
Alignment:
| Q |
122 |
ttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttaatttggagc |
221 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
7662966 |
ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc |
7663065 |
T |
|
| Q |
222 |
agcagggggttttt |
235 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
7663066 |
agcaggggtttttt |
7663079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7662914 - 7662961
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagt |
48 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
7662914 |
ggtggggggaggtgagtcgtattagggatagtggtggtgagggtgagt |
7662961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 134527 - 134693
Alignment:
| Q |
68 |
gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt |
167 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
134527 |
gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt |
134626 |
T |
|
| Q |
168 |
taacggaaaataagctcatgtctgtggcagacttgttctctgttaatttggagcagcagggggtttt |
234 |
Q |
| |
|
|||| || |||||| | |||||||||||||||||||| ||| || ||| ||||||| ||||||||| |
|
|
| T |
134627 |
taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggtttt |
134693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 312354 - 312520
Alignment:
| Q |
68 |
gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt |
167 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
312354 |
gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt |
312453 |
T |
|
| Q |
168 |
taacggaaaataagctcatgtctgtggcagacttgttctctgttaatttggagcagcagggggtttt |
234 |
Q |
| |
|
|||| || |||||| | |||||||||||||||||||| ||| || ||| ||||||| ||||||||| |
|
|
| T |
312454 |
taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggtttt |
312520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 327808 - 327974
Alignment:
| Q |
68 |
gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt |
167 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
327808 |
gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt |
327907 |
T |
|
| Q |
168 |
taacggaaaataagctcatgtctgtggcagacttgttctctgttaatttggagcagcagggggtttt |
234 |
Q |
| |
|
|||| || |||||| | |||||||||||||||||||| ||| || ||| ||||||| ||||||||| |
|
|
| T |
327908 |
taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggtttt |
327974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 8088 - 7975
Alignment:
| Q |
122 |
ttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttaatttggagc |
221 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
8088 |
ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc |
7989 |
T |
|
| Q |
222 |
agcagggggttttt |
235 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
7988 |
agcaggggtttttt |
7975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 8134 - 8093
Alignment:
| Q |
7 |
gggaggtgagtcgtcttaaggatagtgttggtgagggtgagt |
48 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
8134 |
gggaggtgagtcgtattagggatagtggtggtgagggtgagt |
8093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4154 - 4324
Alignment:
| Q |
1 |
ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac |
99 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||| |||||| || ||| | || ||||||| | || |||||| |||||||||||||||| || |||| |
|
|
| T |
4154 |
ggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatggagctcatac |
4253 |
T |
|
| Q |
100 |
gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaa |
170 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
4254 |
gttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaa |
4324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 19236940 - 19236907
Alignment:
| Q |
92 |
tctgatacgttgttttggtatgataagtggttag |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
19236940 |
tctgatacgttgttttggtatgataaatggttag |
19236907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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