View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_328 (Length: 234)

Name: NF6876A_low_328
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_328
NF6876A_low_328
[»] chr7 (8 HSPs)
chr7 (4-227)||(46133466-46133689)
chr7 (4-227)||(38485226-38485450)
chr7 (90-202)||(12480576-12480688)
chr7 (181-227)||(47326274-47326320)
chr7 (119-224)||(29647521-29647625)
chr7 (124-227)||(6584708-6584810)
chr7 (111-189)||(9106852-9106931)
chr7 (199-227)||(9106804-9106832)
[»] chr8 (4 HSPs)
chr8 (4-227)||(10551938-10552162)
chr8 (4-118)||(35062236-35062350)
chr8 (120-203)||(30236420-30236503)
chr8 (10-122)||(30236292-30236404)
[»] chr2 (10 HSPs)
chr2 (4-227)||(31902602-31902824)
chr2 (7-100)||(25505101-25505194)
chr2 (7-122)||(16959800-16959916)
chr2 (35-103)||(27739770-27739838)
chr2 (151-227)||(37771003-37771079)
chr2 (130-197)||(16959710-16959777)
chr2 (6-99)||(29486928-29487021)
chr2 (182-227)||(39339255-39339300)
chr2 (199-227)||(2062552-2062580)
chr2 (114-202)||(2062588-2062676)
[»] chr1 (5 HSPs)
chr1 (29-227)||(4651457-4651656)
chr1 (113-199)||(19598333-19598419)
chr1 (8-122)||(38544930-38545044)
chr1 (7-116)||(17033366-17033475)
chr1 (114-197)||(50589523-50589606)
[»] chr3 (5 HSPs)
chr3 (119-227)||(1653208-1653316)
chr3 (4-122)||(30935579-30935698)
chr3 (119-227)||(30935713-30935822)
chr3 (181-227)||(20611429-20611475)
chr3 (4-122)||(25594708-25594826)
[»] chr6 (3 HSPs)
chr6 (4-227)||(12793766-12794007)
chr6 (83-202)||(26534991-26535109)
chr6 (51-144)||(26216142-26216234)
[»] chr5 (4 HSPs)
chr5 (114-202)||(24072583-24072671)
chr5 (119-199)||(27712766-27712846)
chr5 (7-100)||(8730713-8730806)
chr5 (113-227)||(22675617-22675742)
[»] scaffold1613 (1 HSPs)
scaffold1613 (8-122)||(1209-1323)
[»] chr4 (7 HSPs)
chr4 (4-94)||(35800293-35800383)
chr4 (113-202)||(38929519-38929608)
chr4 (83-159)||(16501462-16501538)
chr4 (119-169)||(12295884-12295934)
chr4 (114-191)||(21988225-21988302)
chr4 (46-103)||(46699015-46699072)
chr4 (199-227)||(12295814-12295842)
[»] scaffold0062 (1 HSPs)
scaffold0062 (119-171)||(46796-46848)
[»] scaffold0499 (1 HSPs)
scaffold0499 (119-190)||(6269-6340)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 46133466 - 46133689
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacaca 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  46133466 catcagaatccagcacactataagcaagaccaacaacgtgacttgcagttgagcaaacatcaatcaaaagggaaaaaaagctcatctcgaaggacacaca 46133565  T
Q  104 tcttcaaaacaccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccaccc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46133566 tcttcaaaacaccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccactc 46133665  T
Q  204 acctcctcacctaagcaacaccaa 227  Q
    ||||||||| ||||||||||||||    
T  46133666 acctcctcatctaagcaacaccaa 46133689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 38485450 - 38485226
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacaca 103  Q
    ||||| |||||||||||| ||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||||||    
T  38485450 catcaaaatccagcacacaataagtaagacagacgacgtgacttgcggtggagcaaacatcaatcaaaagggaaaaaaagctcagctcgaaggacacaca 38485351  T
Q  104 tcttcaaaacaccctaaactc-aaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacc 202  Q
     | | ||||||| |||||||| |||||||||||| | ||||||||||| ||||||||||| |||||||    | ||||||||||||||| ||||||||||    
T  38485350 cccttaaaacactctaaactcaaaaccagagctaacaacaacgagtatagacccgaataacagaggcgacttcaaatagaaatcacccacaacaaccacc 38485251  T
Q  203 cacctcctcacctaagcaacaccaa 227  Q
    ||| |||||||||||||||||||||    
T  38485250 cacttcctcacctaagcaacaccaa 38485226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 12480688 - 12480576
Alignment:
Q  90 tcgaaggacacacatcttcaaaacaccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacc 189  Q
    ||||||||||  |||| ||||| |||||||||| ||||| ||||  ||| ||||||  ||||||||||||||| | |||||| | |||| |||||||||     
T  12480688 tcgaaggacatccatcgtcaaagcaccctaaacacaaacaagagtaagcaacaacggatatggacccgaataacaaaggcggcctccaaaagaaatcact 12480589  T
Q  190 cataacaaccacc 202  Q
    || ||||||||||    
T  12480588 cacaacaaccacc 12480576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 47326274 - 47326320
Alignment:
Q  181 gaaatcacccataacaaccacccacctcctcacctaagcaacaccaa 227  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  47326274 gaaatcacccacaacaaccgcccacctcctcacctaagcaacaccaa 47326320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 29647625 - 29647521
Alignment:
Q  119 aaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacccacctcctcacctaag 218  Q
    |||||||||||| || |||||||||||| |||| ||  |||||| |||||||| | |||| ||||||||| || || || || |||||||||||| |||     
T  29647625 aaactcaaaccaaagttagcgacaacgaatatgaacgtgaataacagaggcggcctccaaaagaaatcacaca-aaaaaacaaccacctcctcacataaa 29647527  T
Q  219 caacac 224  Q
    ||||||    
T  29647526 caacac 29647521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 6584810 - 6584708
Alignment:
Q  124 caaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacccacctcctcacctaagcaaca 223  Q
    ||||| |||||||||||| ||||  |||||||||  ||||||||||  || |||| |||||||||||  ||||| ||||  |||||||||||||  ||||    
T  6584810 caaacaagagctagcgacgacgatcatggacccgtgtaatagaggctatctccaaaagaaatcaccc-caacaaacacctgcctcctcacctaaataaca 6584712  T
Q  224 ccaa 227  Q
    ||||    
T  6584711 ccaa 6584708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 9106931 - 9106852
Alignment:
Q  111 aacaccctaaa-ctcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacc 189  Q
    ||||||||||| ||||||| |||||||||||| ||||  ||||||| |||||| |||||||| | | || ||||||||||    
T  9106931 aacaccctaaaactcaaacaagagctagcgacgacgaaaatggacctgaataacagaggcggcctctaaaagaaatcacc 9106852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 9106832 - 9106804
Alignment:
Q  199 cacccacctcctcacctaagcaacaccaa 227  Q
    |||||||||||||||||||||||||||||    
T  9106832 cacccacctcctcacctaagcaacaccaa 9106804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 10552162 - 10551938
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaa-gctcatctcgaaggacacac 102  Q
    ||||| |||||||||||| ||||| ||||| ||| ||||||||||| |||||||||||||||||||||| || || ||| || || ||||||||||||||    
T  10552162 catcaaaatccagcacacaataagtaagacagacgacgtgacttgcggtggagcaaacatcaatcaaaaaggaaaaaaaagcgcagctcgaaggacacac 10552063  T
Q  103 atcttcaaaacaccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacc 202  Q
    | | |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||  | |||||||||||| |||| ||||||||||    
T  10552062 accctcaaaacaccctaaactcaaacaagagctagcgaaaacgagtaaggacccgaataatataggcgacctccaatagaaatcgcccacaacaaccacc 10551963  T
Q  203 cacctcctcacctaagcaacaccaa 227  Q
    |||||||||||||||||||||||||    
T  10551962 cacctcctcacctaagcaacaccaa 10551938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 35062350 - 35062236
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacaca 103  Q
    |||||||||||||||||| ||||| ||||| ||| ||||||||||| |||||||||||||||||||||  || || | |||||| |||||||| ||||||    
T  35062350 catcagaatccagcacacaataagtaagacggacgacgtgacttgcggtggagcaaacatcaatcaaataggaaaaagagctcaactcgaagggcacaca 35062251  T
Q  104 tcttcaaaacaccct 118  Q
     | |||||| |||||    
T  35062250 ccctcaaaataccct 35062236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 30236420 - 30236503
Alignment:
Q  120 aactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccaccc 203  Q
    ||||||||  |||||||||||||||||||||| ||||||| || |||||||| | |||||||||||||||||  ||||||||||    
T  30236420 aactcaaataagagctagcgacaacgagtatgaacccgaaaaacagaggcggcctccaatagaaatcacccacgacaaccaccc 30236503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 30236292 - 30236404
Alignment:
Q  10 aatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacacatcttca 109  Q
    |||||| ||||| ||||| ||||| | | || ||| | || |||||||||||||||||||||| || || ||  |||| ||||||||||||||| | |||    
T  30236292 aatccaacacacaataagtaagacgggcgacatgattggcggtggagcaaacatcaatcaaaaaggaaaaaacactcagctcgaaggacacacaccctca 30236391  T
Q  110 aaacaccctaaac 122  Q
    ||| |||||||||    
T  30236392 aaataccctaaac 30236404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 31902602 - 31902824
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaa-catcaatcaaaaggggaataaagctcatctcgaaggacacac 102  Q
    |||||||||||||||||||||||||||||||||| |||||||| |  || ||||||| || ||||||||  || || |||||||| ||||||||| ||||    
T  31902602 catcagaatccagcacactataagcaagaccgaccacgtgactagtggtagagcaaaacaacaatcaaa--ggaaaaaaagctcagctcgaaggagacac 31902699  T
Q  103 atcttcaaaacaccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacc 202  Q
    | | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| |||||||||||||| | || ||||||| ||    
T  31902700 accctcaaaacaccctaaactcaaaccagagctagcgacaatgagtatggacccgtataacagaggcggccaccaatagaaatcgctcacaacaaccccc 31902799  T
Q  203 cacctcctcacctaagcaacaccaa 227  Q
    |||||||||||||||||||||||||    
T  31902800 cacctcctcacctaagcaacaccaa 31902824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 25505101 - 25505194
Alignment:
Q  7 cagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacac 100  Q
    ||||||||||||||| ||||| ||||| ||||||  || || | |||| ||||||||||||||||| || || |||||||| ||| ||||||||    
T  25505101 cagaatccagcacacaataagtaagacagacaaccagatttacggtggggcaaacatcaatcaaaaaggaaaaaaagctcagctctaaggacac 25505194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 16959916 - 16959800
Alignment:
Q  7 cagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacacatct 106  Q
    ||||||||||||||| ||| | |||||  ||||| ||| |||| |||| ||||| ||||||||||| || |  |||||||| || ||| |||||||| ||    
T  16959916 cagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaatatcaatcaaaaaggaacaaaagctcagctagaatgacacacacct 16959817  T
Q  107 tc-aaaacaccctaaac 122  Q
    || ||| ||||||||||    
T  16959816 tcgaaaccaccctaaac 16959800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 27739838 - 27739770
Alignment:
Q  35 gacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacaca 103  Q
    |||||| ||| || |||||| ||||||||||||||||| || || |||||||| ||||||| |||||||    
T  27739838 gacaacatgaattacagtggtgcaaacatcaatcaaaaaggaaaaaaagctcaactcgaagaacacaca 27739770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 37771003 - 37771079
Alignment:
Q  151 ggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacccacctcctcacctaagcaacaccaa 227  Q
    |||||||| | |||||||| | | |||| |||||||||||  ||||| ||||| ||||||||||||| |||||||||    
T  37771003 ggacccgagttatagaggcagcctccaacagaaatcaccctcaacaaacacccgcctcctcacctaaacaacaccaa 37771079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 16959777 - 16959710
Alignment:
Q  130 agagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaa 197  Q
    |||| ||||||||| || ||||||||||||||| |||||||| | |||| || ||||||||| |||||    
T  16959777 agaggtagcgacaaggaatatggacccgaataacagaggcggcctccaaaaggaatcacccacaacaa 16959710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 29487021 - 29486928
Alignment:
Q  6 tcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggaca 99  Q
    |||||||||||||||| | ||| || || |||||| ||| |||| |||| ||||||||||||||| | || ||  ||||||| ||| |||||||    
T  29487021 tcagaatccagcacacaacaagtaaaacagacaacatgaattgcggtggtgcaaacatcaatcaacatggaaaacaagctcagctcaaaggaca 29486928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 39339255 - 39339300
Alignment:
Q  182 aaatcacccataacaaccacccacctcctcacctaagcaacaccaa 227  Q
    |||||||||| |||||||||| || |||||||||||||||| ||||    
T  39339255 aaatcacccacaacaaccacctacatcctcacctaagcaacgccaa 39339300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 2062580 - 2062552
Alignment:
Q  199 cacccacctcctcacctaagcaacaccaa 227  Q
    |||||||||||||||||||||||||||||    
T  2062580 cacccacctcctcacctaagcaacaccaa 2062552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 2062676 - 2062588
Alignment:
Q  114 accctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacc 202  Q
    |||| |||||||||| |||| |||| |||| || ||||||||||||| | ||||||   | |||| || ||||||||| ||||||||||    
T  2062676 acccaaaactcaaacgagaggtagcaacaatgaatatggacccgaatcacagaggcaacctccaaaaggaatcacccacaacaaccacc 2062588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 4651656 - 4651457
Alignment:
Q  29 aagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacacatcttcaaaacaccctaaactcaaa- 127  Q
    ||||| ||| ||||||||||| |||||||||||||||||| ||| || || ||| |||| ||||||||||||||| | |||||||||| ||||||||||     
T  4651656 aagacagacgacgtgacttgcggtggagcaaacatcaatcgaaaaggaaaaaaatctcagctcgaaggacacacaccctcaaaacaccataaactcaaaa 4651557  T
Q  128 ccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacccacctcctcacctaagcaacaccaa 227  Q
    ||||||||| | | || |||||||||||||||||| ||||||||   | ||||||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  4651556 ccagagctaacaataatgagtatggacccgaataacagaggcggcttcaaatagaaatcacccacaacagccacccacctcctcatctaagcaacaccaa 4651457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 19598419 - 19598333
Alignment:
Q  113 caccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaacc 199  Q
    ||||| |||||||||| |||  |||||||||||| |||||||| |||||| |||||||||| |||| || ||||||||| |||||||    
T  19598419 cacccaaaactcaaactagatgtagcgacaacgaatatggacctgaataacagaggcggtctccaaaaggaatcacccacaacaacc 19598333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 38544930 - 38545044
Alignment:
Q  8 agaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacacatctt 107  Q
    |||||||||||||| ||| | |||||  || || ||| |||| |||| ||||||||||||||||| || || || ||||| ||||||||||||||| | |    
T  38544930 agaatccagcacacaatatgtaagacaaacgacatgatttgcggtggtgcaaacatcaatcaaaaaggaaaaaatgctcagctcgaaggacacacaccct 38545029  T
Q  108 caaaacaccctaaac 122  Q
    |||| ||||||||||    
T  38545030 caaagcaccctaaac 38545044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 17033475 - 17033366
Alignment:
Q  7 cagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacacatct 106  Q
    ||||||||||||||| ||||| |||||  || ||  || |||  |||| ||||||||||||||||| || || || ||||| ||||||||||| ||| |     
T  17033475 cagaatccagcacacaataagtaagacaaacgacaagatttgtggtggtgcaaacatcaatcaaaaaggaaaaaatgctcagctcgaaggacatacaccc 17033376  T
Q  107 tcaaaacacc 116  Q
    ||||||||||    
T  17033375 tcaaaacacc 17033366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 50589523 - 50589606
Alignment:
Q  114 accctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaa 197  Q
    |||| |||||||| | ||||  |||||||| || ||||||||||||||| |||||||| | |||| || ||||||||| |||||    
T  50589523 acccaaaactcaagcaagaggcagcgacaaggaatatggacccgaataacagaggcggcctccaaaaggaatcacccacaacaa 50589606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 1653208 - 1653316
Alignment:
Q  119 aaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacccacctcctcacctaag 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||   | ||||||||||||| ||| |||||||||||||| ||  |||||||    
T  1653208 aaactcaaacaagagctagcgacaacgagtatggacccgaataacagaggcaacctccaatagaaatcatccacaacaaccacccaccaccgaacctaag 1653307  T
Q  219 caacaccaa 227  Q
    |||||||||    
T  1653308 caacaccaa 1653316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 30935579 - 30935698
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaata-aagctcatctcgaaggacacac 102  Q
    |||||||||||||||||| | ||| ||||| ||  || ||| |||| || ||||||||| |||||| || || || | ||||||| ||||||||||||||    
T  30935579 catcagaatccagcacacaacaagtaagacggatgacatgatttgcggttgagcaaacaacaatcacaaaggaaaaagaagctcagctcgaaggacacac 30935678  T
Q  103 atcttcaaaacaccctaaac 122  Q
    | ||||||||||||||||||    
T  30935679 accttcaaaacaccctaaac 30935698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 30935713 - 30935822
Alignment:
Q  119 aaactcaaaccagagctagcgacaacgagtatggacccgaataat-agaggcggtcaccaatagaaatcacccataacaaccacccacctcctcacctaa 217  Q
    |||||||||  | |||||| |||||| |||||||||||||||||  | | |||  | ||||||||||||  ||| ||||||||||||||||||||| |||    
T  30935713 aaactcaaataaaagctagtgacaacaagtatggacccgaataaacaaatgcgacctccaatagaaatcgtccacaacaaccacccacctcctcacataa 30935812  T
Q  218 gcaacaccaa 227  Q
     |||||||||    
T  30935813 tcaacaccaa 30935822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 20611475 - 20611429
Alignment:
Q  181 gaaatcacccataacaaccacccacctcctcacctaagcaacaccaa 227  Q
    |||||||||||||||||||||| || |||||||||||||||| ||||    
T  20611475 gaaatcacccataacaaccacctacatcctcacctaagcaacgccaa 20611429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 25594708 - 25594826
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacaca 103  Q
    ||||||||||||||| || ||||| ||||| ||| || |||   || |||| ||||||||||||||||| || || || | ||| ||| |||||||| ||    
T  25594708 catcagaatccagcatacaataagtaagacagacgacatgaaaagcggtggtgcaaacatcaatcaaaaaggaaaaaatgttcagctcaaaggacacgca 25594807  T
Q  104 tcttcaaaacaccctaaac 122  Q
     | ||||||||||||||||    
T  25594808 ccctcaaaacaccctaaac 25594826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 12794007 - 12793766
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacaca 103  Q
    |||||||||||||||||| ||||| |||||  |  || ||| |||  |||||||||| ||||||||||| || || |||||||| |||||||||||||||    
T  12794007 catcagaatccagcacacaataagtaagacaaatgacatgatttgaggtggagcaaatatcaatcaaaaaggaaaaaaagctcaactcgaaggacacaca 12793908  T
Q  104 tcttcaaaacaccctaaactc------------------aaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaat 185  Q
     | ||||||||||| |||| |                  |||| |||||||| |||||||||||||||||||||||| | |||||  | |||||||||||    
T  12793907 ccctcaaaacacccaaaacaccttaacaacccacaacttaaacaagagctagggacaacgagtatggacccgaataacaaaggcgacctccaatagaaat 12793808  T
Q  186 cacccataacaaccacccacctcctcacctaagcaacaccaa 227  Q
    |||||| ||||| |||||  ||||||||||||||||||||||    
T  12793807 cacccacaacaatcacccctctcctcacctaagcaacaccaa 12793766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 26534991 - 26535109
Alignment:
Q  83 gctcatctcgaaggacacacatcttcaaaacaccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaataga 182  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| ||||  |||||||||   ||||||||||||||| |||||||||| |||  ||     
T  26534991 gctcagctcgaaggacac-catcttcaaaacaccctaaacacaaacaagagtaagcgacaacagatatggacccgaataacagaggcggtctccacaagg 26535089  T
Q  183 aatcacccataacaaccacc 202  Q
    ||||||||| ||||||||||    
T  26535090 aatcacccacaacaaccacc 26535109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 26216142 - 26216234
Alignment:
Q  51 gtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacacatcttcaaaacaccctaaactcaaaccagagctagcgacaac 144  Q
    |||||||||||||||||||||| || || |||||||| ||| ||| ||||||| | ||||||||||| |||||||||| |||||||||||||||    
T  26216142 gtggagcaaacatcaatcaaaaaggaaa-aaagctcagctcaaagaacacacaccctcaaaacacccaaaactcaaacaagagctagcgacaac 26216234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 24072583 - 24072671
Alignment:
Q  114 accctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacc 202  Q
    |||| ||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| | | || |||||||||||| ||||||||||    
T  24072583 acccaaaacttaaacaagagctagcgacaacgaatatggacccgaataacagaggcggcctctaaaagaaatcacccacaacaaccacc 24072671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 27712846 - 27712766
Alignment:
Q  119 aaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaacc 199  Q
    ||||| |||| |||| |||||||||||| |||  ||||||||||||||||||||| |||| || ||||||||| |||||||    
T  27712846 aaactgaaacaagaggtagcgacaacgaatataaacccgaataatagaggcggtctccaagaggaatcacccacaacaacc 27712766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 8730806 - 8730713
Alignment:
Q  7 cagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacac 100  Q
    ||||||||||||||| ||||| ||||| ||||||  || || | |||| ||||||||||||||||| || || |||||||| ||| ||||||||    
T  8730806 cagaatccagcacacaataagtaagacagacaaccagatttacggtggggcaaacatcaatcaaaaaggaaaaaaagctcagctctaaggacac 8730713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 22675617 - 22675742
Alignment:
Q  113 caccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaac-----------cac 201  Q
    ||||| |||||||||  |||| |||||||||||| || |||||||||||| ||||| |||  |||| || | ||||||| ||||||           |||    
T  22675617 cacccaaaactcaaagaagaggtagcgacaacgaataaggacccgaataacagaggtggtttccaaaaggagtcacccacaacaaccgccacaaaagcac 22675716  T
Q  202 ccacctcctcacctaagcaacaccaa 227  Q
    ||||||||||||||||||||||||||    
T  22675717 ccacctcctcacctaagcaacaccaa 22675742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 1209 - 1323
Alignment:
Q  8 agaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacacatctt 107  Q
    |||||||||||||| ||| | |||||  || || ||| |||| |||| ||||||||||||||||| || || || ||||| ||||||||||||||| | |    
T  1209 agaatccagcacacaatatgtaagacaaacgacatgatttgcggtggtgcaaacatcaatcaaaaaggaaaaaatgctcagctcgaaggacacacaccct 1308  T
Q  108 caaaacaccctaaac 122  Q
    |||| ||||||||||    
T  1309 caaagcaccctaaac 1323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 35800383 - 35800293
Alignment:
Q  4 catcagaatccagcacactataagcaagaccgacaacgtgacttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaa 94  Q
    |||||||||||| ||||| ||||| ||||| ||| || ||| |||| ||||||||| ||||| |||||| ||||| |||||||| ||||||    
T  35800383 catcagaatccaacacacaataagtaagacagacgacatgatttgcggtggagcaatcatcactcaaaaagggaaaaaagctcagctcgaa 35800293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 38929608 - 38929519
Alignment:
Q  113 caccctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcacccataacaaccacc 202  Q
    ||||| |||| ||||| |||  |||||||||||| ||||||||||||||| | |||| ||| |||| || ||||||||| ||||||||||    
T  38929608 cacccaaaacccaaacaagaagtagcgacaacgaatatggacccgaataacataggcagtctccaaaaggaatcacccacaacaaccacc 38929519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 16501538 - 16501462
Alignment:
Q  83 gctcatctcgaaggacacacatcttcaaaacaccctaaactcaaaccagagctagcgacaacgagtatggacccgaa 159  Q
    ||||| |||||||||||| |||||||||| ||||| || | ||||| ||||  |||||||||| |||||||||||||    
T  16501538 gctcagctcgaaggacacccatcttcaaagcacccaaagcacaaacaagagtaagcgacaacgggtatggacccgaa 16501462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 12295934 - 12295884
Alignment:
Q  119 aaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggc 169  Q
    |||||||||| |||| |||||||||||| |||| |||| ||||||||||||    
T  12295934 aaactcaaacaagaggtagcgacaacgaatatgaaccccaataatagaggc 12295884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 21988225 - 21988302
Alignment:
Q  114 accctaaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcaccca 191  Q
    |||| |||||||||| |||| |||||||||||| |||||||| |||||| | || || || |||| || |||||||||    
T  21988225 acccaaaactcaaacaagaggtagcgacaacgaatatggacctgaataacatagacgatctccaaaaggaatcaccca 21988302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 46699015 - 46699072
Alignment:
Q  46 ttgcagtggagcaaacatcaatcaaaaggggaataaagctcatctcgaaggacacaca 103  Q
    ||||||||| ||||||||||||||||| |  || || ||||| |||||||||||||||    
T  46699015 ttgcagtggtgcaaacatcaatcaaaaagtaaaaaatgctcagctcgaaggacacaca 46699072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 12295842 - 12295814
Alignment:
Q  199 cacccacctcctcacctaagcaacaccaa 227  Q
    |||||||||||||||||||||||||||||    
T  12295842 cacccacctcctcacctaagcaacaccaa 12295814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 46848 - 46796
Alignment:
Q  119 aaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcgg 171  Q
    |||||||||| |||||||||||| |||  ||||||||||||||| ||||||||    
T  46848 aaactcaaacaagagctagcgacgacggatatggacccgaataacagaggcgg 46796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 6340 - 6269
Alignment:
Q  119 aaactcaaaccagagctagcgacaacgagtatggacccgaataatagaggcggtcaccaatagaaatcaccc 190  Q
    |||||||||| |||| || ||||||||| || || ||||||||  ||||||||||||||| || ||||||||    
T  6340 aaactcaaacaagaggtatcgacaacgaataaggtcccgaatagcagaggcggtcaccaaaaggaatcaccc 6269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University