View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_33 (Length: 431)

Name: NF6876A_low_33
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_33
NF6876A_low_33
[»] chr5 (1 HSPs)
chr5 (9-431)||(39252499-39252911)
[»] chr1 (3 HSPs)
chr1 (287-340)||(35201495-35201548)
chr1 (287-340)||(35202375-35202428)
chr1 (287-335)||(37643843-37643891)
[»] chr3 (2 HSPs)
chr3 (284-338)||(47007765-47007819)
chr3 (287-338)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (285-329)||(29308399-29308443)
chr2 (285-329)||(29309102-29309146)
chr2 (285-340)||(4161336-4161390)
chr2 (285-329)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (287-340)||(33520893-33520946)
chr8 (287-329)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (285-340)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (287-329)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Complemental strand, 39252911 - 39252499
Alignment:
Q  9 gagatggacatcaaagtgtgattgtctgcgttgtggaatttcaagatgcattcctataactcctctggtaaactctggtaaatatgaacatgcttctgcc 108  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39252911 gagacggacttcaaagtgtgattgtctgcgttgtggaatttcaagatgcattcccataactcctctggtaaactctggtaaatatgaacatgcttctgcc 39252812  T
Q  109 atcattcttgtttgaaaattcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttctctcaattcattcac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252811 atcattcttgtttgaaaattcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttctctcaattcattcac 39252712  T
Q  209 tcactttcattatatagacgcccctaaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagatcctctccatttagg 308  Q
    ||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39252711 tcactttcattata----------taaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagatcctctccattttgg 39252622  T
Q  309 gaggaaatggccatctcaattacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctctaataataatactcc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39252621 gaggaaatggccatctcaattacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctctaatagtaatactcc 39252522  T
Q  409 ctcataatctgactttcacgtga 431  Q
    |||||||||||||||||||||||    
T  39252521 ctcataatctgactttcacgtga 39252499  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 35201495 - 35201548
Alignment:
Q  287 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 340  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  35201495 gtgcagatcctctccatttggggagtaaatggccatctcaatttcctttcataa 35201548  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 35202428 - 35202375
Alignment:
Q  287 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 340  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  35202428 gtgcagatcctctccatttggtgaggaaatggccatctcaatttcctttcataa 35202375  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 37643891 - 37643843
Alignment:
Q  287 gtgcagatcctctccatttagggaggaaatggccatctcaattaccttt 335  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||    
T  37643891 gtgcatatcctctccatttagggagaaaatgacaatctcaatttccttt 37643843  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 47007819 - 47007765
Alignment:
Q  284 tgagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 338  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007819 tgagtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007765  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 47007023 - 47007074
Alignment:
Q  287 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 338  Q
    |||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007023 gtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007074  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 29308443 - 29308399
Alignment:
Q  285 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 329  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29308443 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29308399  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 29309102 - 29309146
Alignment:
Q  285 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 329  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29309102 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29309146  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 4161390 - 4161336
Alignment:
Q  285 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 340  Q
    ||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||    
T  4161390 gagtgcagatcctctccatttgggga-gaaattgcaatctcaatttcctttcataa 4161336  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 29283954 - 29283910
Alignment:
Q  285 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 329  Q
    ||||| |||||||||||||||||||||||||| || |||| ||||    
T  29283954 gagtgtagatcctctccatttagggaggaaattgcaatctaaatt 29283910  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 33520946 - 33520893
Alignment:
Q  287 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 340  Q
    ||||||||||||||||||| | ||||||||||||||| ||||| ||||| ||||    
T  33520946 gtgcagatcctctccatttggtgaggaaatggccatcacaatttcctttaataa 33520893  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 33520216 - 33520258
Alignment:
Q  287 gtgcagatcctctccatttagggaggaaatggccatctcaatt 329  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  33520216 gtgcagatcctctccattttatgaggaaatggccatctcaatt 33520258  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 4275070 - 4275125
Alignment:
Q  285 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 340  Q
    |||| ||||||||||||||||||| || ||||||| ||||||||| || |||||||    
T  4275070 gagtacagatcctctccatttaggtagaaaatggcaatctcaatttccattcataa 4275125  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 1625 - 1667
Alignment:
Q  287 gtgcagatcctctccatttagggaggaaatggccatctcaatt 329  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  1625 gtgcagatcctctccattttatgaggaaatggccatctcaatt 1667  T

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