View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_333 (Length: 232)

Name: NF6876A_low_333
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_333
NF6876A_low_333
[»] chr5 (4 HSPs)
chr5 (19-154)||(33699975-33700110)
chr5 (19-152)||(8317324-8317457)
chr5 (19-148)||(36193756-36193885)
chr5 (18-148)||(25561138-25561269)
[»] chr8 (6 HSPs)
chr8 (19-154)||(10335362-10335497)
chr8 (19-151)||(39823366-39823498)
chr8 (18-148)||(32826592-32826722)
chr8 (19-153)||(11796587-11796713)
chr8 (53-148)||(43899058-43899154)
chr8 (53-154)||(28321011-28321112)
[»] chr7 (5 HSPs)
chr7 (19-154)||(22609817-22609952)
chr7 (47-154)||(37961564-37961671)
chr7 (19-148)||(46205837-46205966)
chr7 (81-154)||(29772422-29772495)
chr7 (18-91)||(43202358-43202431)
[»] chr3 (7 HSPs)
chr3 (19-154)||(54383664-54383799)
chr3 (21-105)||(41410540-41410624)
chr3 (38-154)||(38360172-38360288)
chr3 (19-117)||(26813971-26814069)
chr3 (53-148)||(8913905-8914001)
chr3 (110-154)||(41409799-41409843)
chr3 (34-124)||(17071896-17071986)
[»] chr6 (5 HSPs)
chr6 (19-154)||(34576148-34576283)
chr6 (37-148)||(6266433-6266544)
chr6 (53-154)||(9961146-9961247)
chr6 (56-154)||(33029677-33029775)
chr6 (83-154)||(14113393-14113464)
[»] chr1 (9 HSPs)
chr1 (19-154)||(6797432-6797566)
chr1 (19-154)||(47030428-47030563)
chr1 (19-154)||(1141484-1141618)
chr1 (19-154)||(26028970-26029105)
chr1 (67-154)||(50797990-50798077)
chr1 (19-124)||(49775703-49775808)
chr1 (18-148)||(9245795-9245925)
chr1 (53-154)||(30057568-30057667)
chr1 (66-154)||(40428471-40428556)
[»] scaffold0063 (1 HSPs)
scaffold0063 (24-146)||(35769-35889)
[»] chr2 (3 HSPs)
chr2 (19-154)||(40611581-40611716)
chr2 (19-151)||(33425104-33425235)
chr2 (19-129)||(24441967-24442077)
[»] chr4 (9 HSPs)
chr4 (18-148)||(2933571-2933701)
chr4 (19-154)||(4641601-4641737)
chr4 (18-148)||(4734121-4734251)
chr4 (19-148)||(12842295-12842425)
chr4 (53-154)||(45283081-45283182)
chr4 (54-154)||(40262409-40262509)
chr4 (110-153)||(42989750-42989793)
chr4 (76-154)||(16182244-16182322)
chr4 (166-201)||(21317649-21317684)
[»] scaffold0227 (1 HSPs)
scaffold0227 (37-154)||(5043-5160)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 33700110 - 33699975
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  33700110 acatcattttggtacaaccaacaactcttttgcaattttttaatatatttttaatgattttgatttgcgtgcttctcacattatcaaagggtgttgcatt 33700011  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  33700010 agttgttcaattttggttgtacatataacacaactc 33699975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 8317457 - 8317324
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| ||| || |||||||| |||||  ||||||||||||||||||| |||||| |||||||||||| |||||||| |||||   ||||||||     
T  8317457 acatcatttttgtacaaccaacaacttttttgctattttttaatatatttttactgattttgatttgcgtgctcctcacattgtcaaagattgttgcata 8317358  T
Q  119 agttgttcaattttggttgtacatataacacaac 152  Q
    |||| |  ||||||||||||||| ||||||||||    
T  8317357 agttttataattttggttgtacaaataacacaac 8317324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 36193756 - 36193885
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| ||| || |||||||  |||||  ||||| |||||| |||||| |||||||||||||||||||  ||||| ||| ||| | |||||||||    
T  36193756 acatcatttttgtacaaccaacaacctttttgctattttataatatttttttagtgatttcgatttgcgtgctcttcacaatattaaaaggtgttgcatt 36193855  T
Q  119 agttgttcaattttggttgtacatataaca 148  Q
    ||||||||||||||| ||||||||||||||    
T  36193856 agttgttcaattttgattgtacatataaca 36193885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 25561138 - 25561269
Alignment:
Q  18 gacatcattttggtataatcaacaactcttttg-taattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgca 116  Q
    ||||| ||||| ||| || |||||||| ||||| || |||||||||||  ||||| |||||||||||||| |||| |||||  ||| |||   |||||||    
T  25561138 gacattatttttgtacaaccaacaactattttgctatttttttaatattcttttagtgatttcgatttgcatgctcctcacgatattaaagattgttgca 25561237  T
Q  117 ttagttgttcaattttggttgtacatataaca 148  Q
    | |||| ||||||||| |||| ||| ||||||    
T  25561238 taagttattcaattttagttgcacaaataaca 25561269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 10335497 - 10335362
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    ||||||||||| || || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  10335497 acatcattttgatacaaccaacaactcttttgcaattttttaatctatttttaatgatttcgatttgcgtgcttctcacattatcaaagagtgttgcatt 10335398  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  10335397 agttgttcaattttggttgtacatataacacaactc 10335362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 39823366 - 39823498
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    ||||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  39823366 acatcattttgatacaaccaacaactcttttgcaattttttaatctatttttaatgatttcgatttgcgtgcttctcacattatcaaagggtgttgcatt 39823465  T
Q  119 agttgttcaattttggttgtacatataacacaa 151  Q
    |||||||||||||||||||||||| ||||||||    
T  39823466 agttgttcaattttggttgtacatgtaacacaa 39823498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 32826722 - 32826592
Alignment:
Q  18 gacatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcat 117  Q
    ||||||||||| ||| || |||||||| |||| | ||||||||||||  ||||| ||||||||||||||||| | |||||| ||| |||   |||||| |    
T  32826722 gacatcatttttgtaaaaccaacaactattttattattttttaatattcttttagtgatttcgatttgcgtgttcctcacaatattaaagtttgttgcct 32826623  T
Q  118 tagttgttcaattttggttgtacatataaca 148  Q
     |||||||||||||| |||||||| ||||||    
T  32826622 aagttgttcaattttagttgtacaaataaca 32826592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 11796587 - 11796713
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| ||| || |||||||| |||||    ||||||||||||||||| |||||| |||||||||||| ||||||||      || ||||||||     
T  11796587 acatcatttttgtacaaccaacaacttttttgc---tttttaatatatttttactgattttgatttgcgtgctcctcacatt-----gtgttgttgcata 11796678  T
Q  119 agttgttcaattttggttgtacatataacacaact 153  Q
    |||||| |||||||||||||||| |||||||||||    
T  11796679 agttgtacaattttggttgtacaaataacacaact 11796713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 43899058 - 43899154
Alignment:
Q  53 attttttaatatatttttaat-gatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataaca 148  Q
    |||||||||||| ||||| || ||||| |||||||||||| || ||| ||| ||| | |||||||||||||||||||||||||||||||| ||||||    
T  43899058 attttttaatattttttttattgattttgatttgcgtgctccttacagtattaaagggtgttgcattagttgttcaattttggttgtacaaataaca 43899154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 28321112 - 28321011
Alignment:
Q  53 attttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaac 152  Q
    |||||||||||  |||||| |||||| |||||||||||| ||||||   ||||| | |||||||| |||||| |||||||  ||||||||||||||||||    
T  28321112 attttttaatacttttttattgattttgatttgcgtgctcctcacaaagtcaaaggttgttgcataagttgtccaattttaattgtacatataacacaac 28321013  T
Q  153 tc 154  Q
    ||    
T  28321012 tc 28321011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 22609817 - 22609952
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    ||||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  22609817 acatcattttgatacaatcaacaactcttttgcaatttttaaatatatttttaatgattttgatttgcgtgcttctcacattatcaaagggtgttgcatt 22609916  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    |||||||||||||||||||||||||||| |||||||    
T  22609917 agttgttcaattttggttgtacatataatacaactc 22609952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 37961564 - 37961671
Alignment:
Q  47 tttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataa 146  Q
    |||||||||||||||||  |||||| |||||| |||||||||||| |||||| | ||||| | |||||||| | |||| |||||||||||||||||||||    
T  37961564 tttgtaattttttaatacttttttactgattttgatttgcgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggttgtacatataa 37961663  T
Q  147 cacaactc 154  Q
    ||||||||    
T  37961664 cacaactc 37961671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 46205966 - 46205837
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| ||| || |||||||  ||||   ||||| |||||| |||||| |||||||||||  |||||| |||||| ||| ||| | |||||||||    
T  46205966 acatcatttttgtacaaccaacaacctttttactattttataatatttttttagtgatttcgattcacgtgctcctcacaatattaaaaggtgttgcatt 46205867  T
Q  119 agttgttcaattttggttgtacatataaca 148  Q
    |||||| |||||||||||||||||||||||    
T  46205866 agttgtccaattttggttgtacatataaca 46205837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 29772422 - 29772495
Alignment:
Q  81 atttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 154  Q
    ||||| ||||| |||||| ||||||| | |||||||| |||||||||||| || |||||||||||||| |||||    
T  29772422 atttgtgtgctcctcacaatatcaaaagttgttgcataagttgttcaattctgattgtacatataacataactc 29772495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 43202358 - 43202431
Alignment:
Q  18 gacatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgct 91  Q
    ||||||||||| ||| || |||||| | |||||  |||||||||||  |||||  |||||||||||||||||||    
T  43202358 gacatcatttttgtacaaccaacaattattttgctattttttaatacttttttggtgatttcgatttgcgtgct 43202431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 54383799 - 54383664
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||||||| |  |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||    
T  54383799 acatcattttggtacagccaacaactcttttgcaattttttaatatatttttaataattttgatttgcgtgcttctcacgttatcaaaggatgttgcatt 54383700  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  54383699 agttgttcaattttggttgtacatataacacaactc 54383664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 41410624 - 41410540
Alignment:
Q  21 atcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaa 105  Q
    |||||||||||| ||  ||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  41410624 atcattttggtacaactaacaactcttttgcaattttttaatatatttttaataattttgatttgcgtgcttctcacattatcaa 41410540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 38360288 - 38360172
Alignment:
Q  38 aacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttg 137  Q
    |||||||  |||| ||||||||||||  |||||| ||||||  ||||||||||| |||||| | ||||| | |||||||| | |||| ||||||||||||    
T  38360288 aacaacttctttgcaattttttaatacttttttactgattttaatttgcgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggttg 38360189  T
Q  138 tacatataacacaactc 154  Q
    |||||||||||||||||    
T  38360188 tacatataacacaactc 38360172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 26814069 - 26813971
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcat 117  Q
    |||||||||| ||| || |||||||| ||||   ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| | ||||||||    
T  26814069 acatcatttttgtacaaccaacaacttttttactattttttaatatatttttactgattttgatttgcgtgcttctcacattgtcaaaggttgttgcat 26813971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 8913905 - 8914001
Alignment:
Q  53 attttttaatatatttttaat-gatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataaca 148  Q
    |||||||||||| ||||| || |||||||||||| ||||| |||||| ||| ||| | |||||||||||||||||||||||| ||||||| ||||||    
T  8913905 attttttaatattttttttattgatttcgatttgtgtgctcctcacaatattaaaggttgttgcattagttgttcaattttgattgtacaaataaca 8914001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 41409843 - 41409799
Alignment:
Q  110 tgttgcattagttgttcaattttggttgtacatataacacaactc 154  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  41409843 tgttgcattagttgttcaattttgattgtacatataacacaactc 41409799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 17071896 - 17071986
Alignment:
Q  34 aatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgt 124  Q
    ||||||||||| ||||  ||||||||||||| |||||| | |||| ||||| |||||| |||||| ||| ||    |||||||||||||||    
T  17071896 aatcaacaacttttttacaattttttaatatttttttattcattttgatttacgtgctcctcacaatattaaggattgttgcattagttgt 17071986  T

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Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 34576283 - 34576148
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    ||||||||||| || ||  ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  34576283 acatcattttgatacaactaacaactcttttgcaattttttaatatatttttaatgattttgatttgcgtgcttctcacattatcaaaaggtgttgcatt 34576184  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    ||||||||||||||| ||||| ||||||||||||||    
T  34576183 agttgttcaattttgattgtatatataacacaactc 34576148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 6266544 - 6266433
Alignment:
Q  37 caacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggtt 136  Q
    |||||||| |||||  |||||||||||| |||||| ||||||||||||||||||| |||||| ||| ||| | ||||| || |||||||||||||| |||    
T  6266544 caacaactattttgctattttttaatatttttttagtgatttcgatttgcgtgctcctcacaatattaaaggttgttgtataagttgttcaattttagtt 6266445  T
Q  137 gtacatataaca 148  Q
    ||||| ||||||    
T  6266444 gtacaaataaca 6266433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 9961247 - 9961146
Alignment:
Q  53 attttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaac 152  Q
    |||||||||||| |||| | |||||||||||| ||||||||||||| | | | ||| |||| ||||| |||||||||||| |||||||| ||||||||||    
T  9961247 attttttaatattttttgattgatttcgatttacgtgcttctcacaatgttatatggtgttacattaattgttcaattttagttgtacaaataacacaac 9961148  T
Q  153 tc 154  Q
    ||    
T  9961147 tc 9961146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 33029677 - 33029775
Alignment:
Q  56 ttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 154  Q
    ||||||||| |||| | |||||||||||| | ||||  ||||| | | | ||| |||||| |||||||| |||||||||||||| | ||||||||||||    
T  33029677 ttttaatattttttgattgatttcgatttacatgctcatcacaatgttatatggtgttgcgttagttgtccaattttggttgtataaataacacaactc 33029775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 14113393 - 14113464
Alignment:
Q  83 ttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 154  Q
    ||||||||| |||||| ||||||| | |||||||| | || | |||||||  ||||||||||||||||||||    
T  14113393 ttgcgtgctcctcacaatatcaaaggttgttgcataaattatccaattttaattgtacatataacacaactc 14113464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 6797432 - 6797566
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    ||||||||||| || || ||| ||||||||  ||||||||||||||||||||||||||||  |||||||||||||||||||||| ||| | |||||||||    
T  6797432 acatcattttgatacaaccaataactcttta-taattttttaatatatttttaatgattttaatttgcgtgcttctcacattattaaagggtgttgcatt 6797530  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    |||||||||||||| |||||||||||||||||||||    
T  6797531 agttgttcaattttagttgtacatataacacaactc 6797566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 47030563 - 47030428
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    ||||| |||||||| || ||| |||||||||| ||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||  | |||||||||    
T  47030563 acatcgttttggtacaaccaataactcttttgcaatattttactatatttttaatgatttcaatttacgtgcttctcacattatcaatggttgttgcatt 47030464  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    |||||||||||||||||||||||||||| |||||||    
T  47030463 agttgttcaattttggttgtacatataaaacaactc 47030428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 1141484 - 1141618
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtg-cttctcacattatcaaatgatgttgcat 117  Q
    |||||||||| |||||| |||||||||||||||||||||| |||||||||| ||| |||| |||||||||  ||||| ||||||| ||| | ||||||||    
T  1141484 acatcattttagtataaccaacaactcttttgtaattttt-aatatatttt-aataattttgatttgcgtttcttcttacattattaaagggtgttgcat 1141581  T
Q  118 tagttgttcaattttggttgtacatataacacaactc 154  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1141582 tagttattcaattttggttgtacatataacacaactc 1141618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 26029105 - 26028970
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| ||| || |||||||| |||||| ||||||||||||||||||| |||||| |||||||||||| |||||||| |||||   ||||| ||     
T  26029105 acatcatttttgtacaagcaacaacttttttgttattttttaatatatttttactgattttgatttgcgtgctcctcacattgtcaaagattgttgtata 26029006  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    |||||| ||||||| |||||||| ||||||||||||    
T  26029005 agttgtacaattttagttgtacaaataacacaactc 26028970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 50798077 - 50797990
Alignment:
Q  67 ttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 154  Q
    ||||||||||||  ||||| |||||||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||    
T  50798077 ttttaatgattttaatttgtgtgcttctcacattatcaaagggtgttgcatttgtcgttcaattttggttgtacatataacacaactc 50797990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 49775703 - 49775808
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| ||| || |||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||  ||||||| ||||| | ||||||||     
T  49775703 acatcatttttgtacaaccaacaacttttttgttattttttaatatatttttattgattttgatttgcgtgctcttcacattgtcaaaggttgttgcata 49775802  T
Q  119 agttgt 124  Q
    ||||||    
T  49775803 agttgt 49775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 9245925 - 9245795
Alignment:
Q  18 gacatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcat 117  Q
    ||||||||||| ||| || |||||||| |||||  ||||||||||||  ||||||||||||  |||||||| |  |||||| ||| ||| | ||||||||    
T  9245925 gacatcatttttgtacaaccaacaactattttgctattttttaatattcttttaatgatttttatttgcgtacacctcacaatattaaaagttgttgcat 9245826  T
Q  118 tagttgttcaattttggttgtacatataaca 148  Q
     ||||||||||||||| ||||||| ||||||    
T  9245825 aagttgttcaattttgattgtacaaataaca 9245795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 30057667 - 30057568
Alignment:
Q  53 attttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaac 152  Q
    |||||||||||||||| || |||||| |||||| ||| | |||||||| ||||| | |||||||| ||  || |||||||||||||||| |||||| |||    
T  30057667 attttttaatatatttgtactgattttgatttgagtgttcctcacattgtcaaaagttgttgcataag--gtacaattttggttgtacaaataacataac 30057570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 40428556 - 40428471
Alignment:
Q  66 tttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 154  Q
    |||||| |||||| ||||||||||||||||||||| ||||| | |||||    |||||| ||||||| |||||||| ||||||||||||    
T  40428556 tttttactgattttgatttgcgtgcttctcacattgtcaaaggttgttg---aagttgtacaattttagttgtacaaataacacaactc 40428471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 35889 - 35769
Alignment:
Q  24 attttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttg 123  Q
    ||||||||| ||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||| |||||| | |||||  ||||| |||||||||    
T  35889 attttggtacaatcaacaactcttttgga-ttttttaatat-tttttaataatttcgatttgcgtgctcctcacaatgtcaaaaaatgttacattagttg 35792  T
Q  124 ttcaattttggttgtacatataa 146  Q
    ||||| |||||||||||||||||    
T  35791 ttcaaatttggttgtacatataa 35769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 40611581 - 40611716
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| ||| || |||||||| |||||  ||||||||||||||||||| |||||| |||||||||||| |||||||| ||||| | ||||||||     
T  40611581 acatcatttttgtacaaccaacaacttttttgctattttttaatatatttttattgattttgatttgcgtgctcctcacattgtcaaaggttgttgcata 40611680  T
Q  119 agttgttcaattttggttgtacatataacacaactc 154  Q
    |||||| ||| | | |||||||| ||||||||||||    
T  40611681 agttgtacaaatatcgttgtacaaataacacaactc 40611716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 33425235 - 33425104
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| |||||| ||||||||  |||  || |||||||||| |||||| |||||| ||||||||||||||||||| |||||||   ||||||||     
T  33425235 acatcatttttgtataaccaacaacttctttacaaatttttaatat-tttttattgattttgatttgcgtgcttctcacaatatcaaagattgttgcata 33425137  T
Q  119 agttgttcaattttggttgtacatataacacaa 151  Q
    |||||| ||||||||  ||||||||||||||||    
T  33425136 agttgtccaattttgaatgtacatataacacaa 33425104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 24441967 - 24442077
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcatt 118  Q
    |||||||||| ||| || |||||||  |||||  ||||| |||||| |||||| |||||||||||||| |||| |||||| ||| ||| | |||||||||    
T  24441967 acatcatttttgtacaaccaacaacctttttgctattttataatatttttttagtgatttcgatttgcatgctcctcacaatattaaaaggtgttgcatt 24442066  T
Q  119 agttgttcaat 129  Q
    |||||| ||||    
T  24442067 agttgtccaat 24442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 2933571 - 2933701
Alignment:
Q  18 gacatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcat 117  Q
    ||||||||||| ||| || |||||||| ||||   |||||||||||| |||||| |||||| |||||||| ||| |||||| ||| |||   |||| |||    
T  2933571 gacatcatttttgtacaaccaacaactattttactattttttaatatttttttagtgattttgatttgcgcgctcctcacaatattaaaaattgttacat 2933670  T
Q  118 tagttgttcaattttggttgtacatataaca 148  Q
    |||||||||||||||||||||||| ||||||    
T  2933671 tagttgttcaattttggttgtacaaataaca 2933701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 4641737 - 4641601
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaata-tatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcat 117  Q
    |||| ||||| ||| || ||||||||  |||| |||||||||||| | |||||| ||||||  |||||||||||||||||| | ||||| | ||||||||    
T  4641737 acataatttttgtacaaccaacaacttctttgcaattttttaatactttttttattgattttaatttgcgtgcttctcacaatgtcaaaggttgttgcat 4641638  T
Q  118 tagttgttcaattttggttgtacatataacacaactc 154  Q
     | || | ||||||||||||||||||| |||||||||    
T  4641637 aaattatccaattttggttgtacatattacacaactc 4641601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4734251 - 4734121
Alignment:
Q  18 gacatcattttggtataatcaacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcat 117  Q
    ||||||||||| ||| || |||||||| |||||  ||||||||||||  ||||| |||||| |||| ||||||| |||||| ||| ||| | ||||||||    
T  4734251 gacatcatttttgtacaaccaacaactattttgctattttttaatattcttttagtgattttgattggcgtgctcctcacaatattaaaagttgttgcat 4734152  T
Q  118 tagttgttcaattttggttgtacatataaca 148  Q
     | ||||||||||||| || |||| ||||||    
T  4734151 aaattgttcaattttgattatacaaataaca 4734121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 12842295 - 12842425
Alignment:
Q  19 acatcattttggtataatcaacaactcttttgtaattttttaatatatttttaa-tgatttcgatttgcgtgcttctcacattatcaaatgatgttgcat 117  Q
    |||||||||| ||| || ||||||||  ||||  |||||||||||| ||||| | |||||| ||||||| || | |||||| ||| ||| | ||||| ||    
T  12842295 acatcatttttgtacaaccaacaacttctttgctattttttaatattttttttagtgattttgatttgcatgttcctcacaatattaaaggttgttgtat 12842394  T
Q  118 tagttgttcaattttggttgtacatataaca 148  Q
    |||||||| ||||||||||||||| ||||||    
T  12842395 tagttgttgaattttggttgtacaaataaca 12842425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 45283182 - 45283081
Alignment:
Q  53 attttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaac 152  Q
    |||||||||||| |||||| |||||||||||||| | || |||||||| | | ||| | ||||||||||| | |||||||  ||||||| |||||| |||    
T  45283182 attttttaatatttttttattgatttcgatttgcatactcctcacattgttatatggtattgcattagttctccaattttaattgtacaaataacataac 45283083  T
Q  153 tc 154  Q
    ||    
T  45283082 tc 45283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 40262409 - 40262509
Alignment:
Q  54 ttttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaact 153  Q
    ||||||||||| |||| | ||||||| |||||| |||| ||||   | | ||||| ||||||||||||||| ||||||| | |||||| |||||||||||    
T  40262409 ttttttaatattttttgactgatttcaatttgcatgctcctcaagatgtaaaatggtgttgcattagttgtccaattttagatgtacaaataacacaact 40262508  T
Q  154 c 154  Q
    |    
T  40262509 c 40262509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 42989793 - 42989750
Alignment:
Q  110 tgttgcattagttgttcaattttggttgtacatataacacaact 153  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  42989793 tgttgcattagttgttcaattttggttgtacaaataatacaact 42989750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 16182322 - 16182244
Alignment:
Q  76 tttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 154  Q
    |||| |||||| |||| |||||||| | |  || ||||||||||||||| |||||||||||||||  ||||||||||||    
T  16182322 tttcaatttgcatgctcctcacattgttatttggtgttgcattagttgtccaattttggttgtacgaataacacaactc 16182244  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 21317684 - 21317649
Alignment:
Q  166 aatgttattggtaatacaaaaagtgttacaaagaga 201  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21317684 aatgttattggtaatacaaaaagagttacaaagaga 21317649  T

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Target: scaffold0227 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 5160 - 5043
Alignment:
Q  37 caacaactcttttgtaattttttaatatatttttaatgatttcgatttgcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggtt 136  Q
    ||||||||  |||| ||||||||||||  ||||||||||||| |||||||||| | || ||| |||||||   |||||||| | |||| ||||||| |||    
T  5160 caacaacttctttgcaattttttaatacttttttaatgattttgatttgcgtgttccttacaatatcaaagattgttgcataaattgtccaattttagtt 5061  T
Q  137 gtacatataacacaactc 154  Q
    ||||||||||||||||||    
T  5060 gtacatataacacaactc 5043  T

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